RNA–Protein interactions for RNA: ENST00000223398.10

CLIP2-201, Transcript of CAP-Gly domain containing linker protein 2, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CLIP2, Length 5,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP2-201ENST00000223398 SPTBN5Q9NRC6 3674 aaKnown RBP10.52□□□□□ -0.73
CLIP2-201ENST00000223398 KRTAP29-1A8MX34 341 aaPredicted RBP10.5□□□□□ -0.73
CLIP2-201ENST00000223398 PLAC4Q8WY50 150 aa10.5□□□□□ -0.73
CLIP2-201ENST00000223398 Q5VV11 94 aa10.5□□□□□ -0.73
CLIP2-201ENST00000223398 RPL37P61927 97 aaKnown RBP10.48□□□□□ -0.73
CLIP2-201ENST00000223398 SPATA8Q6RVD6 105 aa10.47□□□□□ -0.73
CLIP2-201ENST00000223398 PRAC1Q96KF2 57 aa10.47□□□□□ -0.73
CLIP2-201ENST00000223398 H1FX-AS1Q4G0G2 97 aa10.47□□□□□ -0.73
CLIP2-201ENST00000223398 SPEGQ15772 3267 aa10.47□□□□□ -0.73
CLIP2-201ENST00000223398 DMXL1Q9Y485 3027 aa10.46□□□□□ -0.73
CLIP2-201ENST00000223398 USP34Q70CQ2 3546 aa10.45□□□□□ -0.74
CLIP2-201ENST00000223398 NIPBLQ6KC79 2804 aaeCLIP10.44□□□□□ -0.74
CLIP2-201ENST00000223398 RPS29P62273 56 aaKnown RBP10.42□□□□□ -0.74
CLIP2-201ENST00000223398 Q5XG85 94 aa10.42□□□□□ -0.74
CLIP2-201ENST00000223398 DCHS2Q6V1P9 2916 aa10.41□□□□□ -0.74
CLIP2-201ENST00000223398 KRTAP13-1Q8IUC0 172 aa10.39□□□□□ -0.75
CLIP2-201ENST00000223398 ASB16-AS1Q495Z4 193 aa10.39□□□□□ -0.75
CLIP2-201ENST00000223398 ZANQ9Y493 2812 aa10.38□□□□□ -0.75
CLIP2-201ENST00000223398 C20orf166-AS1Q96NR2 134 aa10.31□□□□□ -0.76
CLIP2-201ENST00000223398 ROMO1P60602 79 aa10.31□□□□□ -0.76
CLIP2-201ENST00000223398 A8MUU9 505 aa10.26□□□□□ -0.77
CLIP2-201ENST00000223398 NF1P21359 2839 aa10.18□□□□□ -0.78
CLIP2-201ENST00000223398 LOC400499M0QZD8 3231 aa10.15□□□□□ -0.78
CLIP2-201ENST00000223398 A8MU10 97 aa10.15□□□□□ -0.79
CLIP2-201ENST00000223398 HRNRQ86YZ3 2850 aaPredicted RBP10.14□□□□□ -0.79
CLIP2-201ENST00000223398 FBN2P35556 2912 aa10.11□□□□□ -0.79
CLIP2-201ENST00000223398 TENM1Q9UKZ4 2725 aa10.09□□□□□ -0.79
CLIP2-201ENST00000223398 TENM2Q9NT68 2774 aa10.06□□□□□ -0.8
CLIP2-201ENST00000223398 MYO15AQ9UKN7 3530 aa10.05□□□□□ -0.8
CLIP2-201ENST00000223398 TENM3Q9P273 2699 aa10.05□□□□□ -0.8
CLIP2-201ENST00000223398 KRTAP1-4P0C5Y4 121 aa10.04□□□□□ -0.8
CLIP2-201ENST00000223398 A0A1B0GVY2 172 aa9.99□□□□□ -0.81
CLIP2-201ENST00000223398 XP32Q5T750 250 aa9.99□□□□□ -0.81
CLIP2-201ENST00000223398 PKD1L1Q8TDX9 2849 aa9.9□□□□□ -0.82
CLIP2-201ENST00000223398 A0A0A0MQY5 61 aa9.89□□□□□ -0.83
CLIP2-201ENST00000223398 MXRA5Q9NR99 2828 aa9.88□□□□□ -0.83
CLIP2-201ENST00000223398 RELNP78509 3460 aa9.87□□□□□ -0.83
CLIP2-201ENST00000223398 DCHS1Q96JQ0 3298 aa9.87□□□□□ -0.83
CLIP2-201ENST00000223398 CELSR1Q9NYQ6 3014 aa9.86□□□□□ -0.83
CLIP2-201ENST00000223398 H3BS24 57 aa9.82□□□□□ -0.84
CLIP2-201ENST00000223398 WDFY3Q8IZQ1 3526 aa9.78□□□□□ -0.84
CLIP2-201ENST00000223398 TPRXLQ17RH7 258 aa9.77□□□□□ -0.85
CLIP2-201ENST00000223398 TNP1P09430 55 aa9.76□□□□□ -0.85
CLIP2-201ENST00000223398 KRTAP10-8P60410 259 aa9.74□□□□□ -0.85
CLIP2-201ENST00000223398 VWFP04275 2813 aa9.72□□□□□ -0.85
CLIP2-201ENST00000223398 KRTAP10-10P60014 251 aa9.69□□□□□ -0.86
CLIP2-201ENST00000223398 KRTAP25-1Q3LHN0 102 aa9.67□□□□□ -0.86
CLIP2-201ENST00000223398 ASPMQ8IZT6 3477 aa9.65□□□□□ -0.86
CLIP2-201ENST00000223398 KRTAP13-3Q3SY46 172 aa9.64□□□□□ -0.87
CLIP2-201ENST00000223398 NBPF19A0A087WUL8 3843 aa9.62□□□□□ -0.87
CLIP2-201ENST00000223398 LAMA5O15230 3695 aa9.62□□□□□ -0.87
CLIP2-201ENST00000223398 A6NN06 94 aa9.61□□□□□ -0.87
CLIP2-201ENST00000223398 KRTAP16-1A8MUX0 517 aa9.56□□□□□ -0.88
CLIP2-201ENST00000223398 PDZD2O15018 2839 aa9.54□□□□□ -0.88
CLIP2-201ENST00000223398 C10orf95Q9H7T3 257 aa9.51□□□□□ -0.89
CLIP2-201ENST00000223398 TGP01266 2768 aa9.5□□□□□ -0.89
CLIP2-201ENST00000223398 ZFHX4Q86UP3 3567 aa9.47□□□□□ -0.89
CLIP2-201ENST00000223398 ZFHX3Q15911 3703 aa9.46□□□□□ -0.89
CLIP2-201ENST00000223398 FBN1P35555 2871 aaKnown RBP9.45□□□□□ -0.9
CLIP2-201ENST00000223398 OTOGQ6ZRI0 2925 aa9.39□□□□□ -0.91
CLIP2-201ENST00000223398 P0C880 135 aa9.38□□□□□ -0.91
CLIP2-201ENST00000223398 H0YAA0 97 aa9.35□□□□□ -0.91
CLIP2-201ENST00000223398 DMDP11532 3685 aa9.33□□□□□ -0.92
CLIP2-201ENST00000223398 PRO2289Q9P1D8 64 aa9.33□□□□□ -0.92
CLIP2-201ENST00000223398 NDUFAF8A1L188 74 aa9.32□□□□□ -0.92
CLIP2-201ENST00000223398 SRRM2Q9UQ35 2752 aaKnown RBP9.31□□□□□ -0.92
CLIP2-201ENST00000223398 MUC3AQ02505 3323 aa9.26□□□□□ -0.93
CLIP2-201ENST00000223398 PP632Q6XCG6 107 aa9.24□□□□□ -0.93
CLIP2-201ENST00000223398 CSMD1Q96PZ7 3565 aa9.18□□□□□ -0.94
CLIP2-201ENST00000223398 CSMD2Q7Z408 3487 aa9.11□□□□□ -0.95
CLIP2-201ENST00000223398 SMG1Q96Q15 3661 aaKnown RBP9.11□□□□□ -0.95
CLIP2-201ENST00000223398 ANK3Q12955 4377 aaKnown RBP9.07□□□□□ -0.96
CLIP2-201ENST00000223398 FBN3Q75N90 2809 aa8.97□□□□□ -0.97
CLIP2-201ENST00000223398 SVEP1Q4LDE5 3571 aa8.96□□□□□ -0.97
CLIP2-201ENST00000223398 KRTAP12-2P59991 146 aa8.92□□□□□ -0.98
CLIP2-201ENST00000223398 CUBNO60494 3623 aa8.89□□□□□ -0.99
CLIP2-201ENST00000223398 TRRAPQ9Y4A5 3859 aa8.88□□□□□ -0.99
CLIP2-201ENST00000223398 SPENQ96T58 3664 aaKnown RBP8.83□□□□□ -1
CLIP2-201ENST00000223398 KRTAP3-1Q9BYR8 98 aa8.83□□□□□ -1
CLIP2-201ENST00000223398 COL7A1Q02388 2944 aa8.82□□□□□ -1
CLIP2-201ENST00000223398 KRTAP4-5Q9BYR2 181 aa8.8□□□□□ -1
CLIP2-201ENST00000223398 MT1HL1P0DM35 61 aa8.8□□□□□ -1
CLIP2-201ENST00000223398 MEGF8Q7Z7M0 2845 aa8.78□□□□□ -1
CLIP2-201ENST00000223398 KRTAP12-1P59990 96 aa8.72□□□□□ -1.01
CLIP2-201ENST00000223398 KRTAP13-4Q3LI77 160 aa8.68□□□□□ -1.02
CLIP2-201ENST00000223398 HUWE1Q7Z6Z7 4374 aaKnown RBP8.54□□□□□ -1.04
CLIP2-201ENST00000223398 BSNQ9UPA5 3926 aa8.52□□□□□ -1.05
CLIP2-201ENST00000223398 KRTAP10-4P60372 401 aaPredicted RBP8.5□□□□□ -1.05
CLIP2-201ENST00000223398 KRTAP10-6P60371 365 aaPredicted RBP8.48□□□□□ -1.05
CLIP2-201ENST00000223398 KRTAP15-1Q3LI76 137 aa8.46□□□□□ -1.06
CLIP2-201ENST00000223398 VPS13CQ709C8 3753 aa8.33□□□□□ -1.08
CLIP2-201ENST00000223398 ALMS1Q8TCU4 4167 aa8.26□□□□□ -1.09
CLIP2-201ENST00000223398 CRCT1Q9UGL9 99 aa8.26□□□□□ -1.09
CLIP2-201ENST00000223398 KRTAP3-3Q9BYR6 98 aa8.25□□□□□ -1.09
CLIP2-201ENST00000223398 KRTAP10-12P60413 245 aa8.19□□□□□ -1.1
CLIP2-201ENST00000223398 KRTAP3-2Q9BYR7 98 aa8.19□□□□□ -1.1
CLIP2-201ENST00000223398 CSMD3Q7Z407 3707 aa8.13□□□□□ -1.11
CLIP2-201ENST00000223398 DNAH9Q9NYC9 4486 aa8.11□□□□□ -1.11
CLIP2-201ENST00000223398 DNAH5Q8TE73 4624 aa8.06□□□□□ -1.12
CLIP2-201ENST00000223398 ZNF469Q96JG9 3925 aaPredicted RBP8.01□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms