RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 ITPR1Q14643 2758 aa9.02□□□□□ -0.97
CPSF1-212ENST00000616140 DSCR10P59022 87 aa9.01□□□□□ -0.97
CPSF1-212ENST00000616140 IGLV5-48A0A075B6I7 105 aa9.01□□□□□ -0.97
CPSF1-212ENST00000616140 BOD1L1Q8NFC6 3051 aa9.01□□□□□ -0.97
CPSF1-212ENST00000616140 SSBP3-AS1Q7Z2R9 100 aa9□□□□□ -0.97
CPSF1-212ENST00000616140 ADGRG4Q8IZF6 3080 aa9□□□□□ -0.97
CPSF1-212ENST00000616140 CYP4F30PQ9H0H9 118 aa8.99□□□□□ -0.97
CPSF1-212ENST00000616140 ASH1LQ9NR48 2969 aaKnown RBP8.99□□□□□ -0.97
CPSF1-212ENST00000616140 PSORS1C2Q9UIG4 136 aa8.97□□□□□ -0.97
CPSF1-212ENST00000616140 COL12A1Q99715 3063 aa8.97□□□□□ -0.97
CPSF1-212ENST00000616140 CNBPP62633 177 aaKnown RBP8.97□□□□□ -0.97
CPSF1-212ENST00000616140 REV3LO60673 3130 aa8.96□□□□□ -0.98
CPSF1-212ENST00000616140 SPRR4Q96PI1 79 aa8.94□□□□□ -0.98
CPSF1-212ENST00000616140 UQCR11O14957 56 aa8.93□□□□□ -0.98
CPSF1-212ENST00000616140 WIPF1O43516 503 aa8.93□□□□□ -0.98
CPSF1-212ENST00000616140 APLNQ9ULZ1 77 aa8.92□□□□□ -0.98
CPSF1-212ENST00000616140 OCR1Q9BZK8 76 aa8.92□□□□□ -0.98
CPSF1-212ENST00000616140 IGLV5-37A0A075B6J1 123 aa8.91□□□□□ -0.98
CPSF1-212ENST00000616140 IGLV7-43P04211 117 aa8.9□□□□□ -0.98
CPSF1-212ENST00000616140 Q8NDZ9 215 aa8.9□□□□□ -0.99
CPSF1-212ENST00000616140 MYO15AQ9UKN7 3530 aa8.89□□□□□ -0.99
CPSF1-212ENST00000616140 COL6A3P12111 3177 aa8.89□□□□□ -0.99
CPSF1-212ENST00000616140 LINC00304Q8N9R0 145 aa8.88□□□□□ -0.99
CPSF1-212ENST00000616140 SMR3BP02814 79 aaPredicted RBP8.87□□□□□ -0.99
CPSF1-212ENST00000616140 CFAP47Q6ZTR5 3102 aa8.86□□□□□ -0.99
CPSF1-212ENST00000616140 ZZEF1O43149 2961 aa8.85□□□□□ -0.99
CPSF1-212ENST00000616140 SPANXA2-OT1Q8N9U9 137 aa8.84□□□□□ -0.99
CPSF1-212ENST00000616140 DMBT1Q9UGM3 2413 aaPredicted RBP8.84□□□□□ -0.99
CPSF1-212ENST00000616140 C9orf92A6NGG3 77 aa8.84□□□□□ -0.99
CPSF1-212ENST00000616140 MIR22HGQ0VDD5 57 aa8.83□□□□□ -1
CPSF1-212ENST00000616140 UTP20O75691 2785 aaKnown RBP8.81□□□□□ -1
CPSF1-212ENST00000616140 J3QL48 77 aa8.81□□□□□ -1
CPSF1-212ENST00000616140 PRR26Q8N8Z3 221 aa8.8□□□□□ -1
CPSF1-212ENST00000616140 ITPR2Q14571 2701 aa8.79□□□□□ -1
CPSF1-212ENST00000616140 CYSTM1Q9H1C7 97 aa8.78□□□□□ -1
CPSF1-212ENST00000616140 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.78□□□□□ -1
CPSF1-212ENST00000616140 LRBAP50851 2863 aa8.77□□□□□ -1.01
CPSF1-212ENST00000616140 CELSR2Q9HCU4 2923 aa8.77□□□□□ -1.01
CPSF1-212ENST00000616140 Q8N1X5 172 aa8.75□□□□□ -1.01
CPSF1-212ENST00000616140 HIVEP1P15822 2718 aa8.75□□□□□ -1.01
CPSF1-212ENST00000616140 TNP2Q05952 138 aa8.74□□□□□ -1.01
CPSF1-212ENST00000616140 SPRR1AP35321 89 aa8.74□□□□□ -1.01
CPSF1-212ENST00000616140 SPTBN5Q9NRC6 3674 aaKnown RBP8.72□□□□□ -1.01
CPSF1-212ENST00000616140 SPINT4Q6UDR6 99 aa8.71□□□□□ -1.02
CPSF1-212ENST00000616140 NIPBLQ6KC79 2804 aaeCLIP8.7□□□□□ -1.025e-8■□□□□ 8.3
CPSF1-212ENST00000616140 KTN1-AS1Q86SY8 53 aa8.69□□□□□ -1.02
CPSF1-212ENST00000616140 ZANQ9Y493 2812 aa8.69□□□□□ -1.02
CPSF1-212ENST00000616140 Q1T7F1 81 aa8.68□□□□□ -1.02
CPSF1-212ENST00000616140 CD164Q04900 197 aa8.68□□□□□ -1.02
CPSF1-212ENST00000616140 CDC42SE1Q9NRR8 79 aa8.67□□□□□ -1.02
CPSF1-212ENST00000616140 IGLV7-46A0A075B6I9 117 aa8.67□□□□□ -1.02
CPSF1-212ENST00000616140 KMT2BQ9UMN6 2715 aaPredicted RBP8.67□□□□□ -1.02
CPSF1-212ENST00000616140 TNRC18O15417 2968 aaPredicted RBP8.66□□□□□ -1.02
CPSF1-212ENST00000616140 APCP25054 2843 aa8.65□□□□□ -1.02
CPSF1-212ENST00000616140 MMP24-AS1A0A0U1RRL7 71 aa8.65□□□□□ -1.02
CPSF1-212ENST00000616140 FP248Q71RG6 208 aaPredicted RBP8.63□□□□□ -1.03
CPSF1-212ENST00000616140 FAM229BQ4G0N7 80 aa8.62□□□□□ -1.03
CPSF1-212ENST00000616140 KRTAP26-1Q6PEX3 210 aa8.62□□□□□ -1.03
CPSF1-212ENST00000616140 H3BS24 57 aa8.62□□□□□ -1.03
CPSF1-212ENST00000616140 HRES1P13985 223 aa8.62□□□□□ -1.03
CPSF1-212ENST00000616140 KRTAP1-5Q9BYS1 174 aa8.62□□□□□ -1.03
CPSF1-212ENST00000616140 Q5XG85 94 aa8.61□□□□□ -1.03
CPSF1-212ENST00000616140 CRIPTQ9P021 101 aa8.61□□□□□ -1.03
CPSF1-212ENST00000616140 COX6B2Q6YFQ2 88 aa8.61□□□□□ -1.03
CPSF1-212ENST00000616140 LCA10Q71F78 164 aa8.61□□□□□ -1.03
CPSF1-212ENST00000616140 DCHS2Q6V1P9 2916 aa8.6□□□□□ -1.03
CPSF1-212ENST00000616140 LINC00472Q9H8W2 130 aa8.6□□□□□ -1.03
CPSF1-212ENST00000616140 Q8N9P0 234 aaPredicted RBP8.59□□□□□ -1.03
CPSF1-212ENST00000616140 A0A0D9SG42 100 aa8.59□□□□□ -1.03
CPSF1-212ENST00000616140 USP34Q70CQ2 3546 aa8.59□□□□□ -1.03
CPSF1-212ENST00000616140 SPRR1BP22528 89 aa8.58□□□□□ -1.04
CPSF1-212ENST00000616140 PLAC8Q9NZF1 115 aa8.56□□□□□ -1.04
CPSF1-212ENST00000616140 TENM4Q6N022 2769 aa8.56□□□□□ -1.04
CPSF1-212ENST00000616140 OXTP01178 125 aa8.55□□□□□ -1.04
CPSF1-212ENST00000616140 LINC01554Q52M75 96 aa8.54□□□□□ -1.04
CPSF1-212ENST00000616140 NF1P21359 2839 aa8.53□□□□□ -1.04
CPSF1-212ENST00000616140 Q75L30 129 aa8.52□□□□□ -1.05
CPSF1-212ENST00000616140 LOC400499M0QZD8 3231 aa8.51□□□□□ -1.05
CPSF1-212ENST00000616140 RBM12B-AS1Q9P1G2 102 aa8.51□□□□□ -1.05
CPSF1-212ENST00000616140 CRYBG3Q68DQ2 2970 aa8.5□□□□□ -1.05
CPSF1-212ENST00000616140 LINC01558Q9Y6Z2 57 aa8.5□□□□□ -1.05
CPSF1-212ENST00000616140 WDFY3Q8IZQ1 3526 aa8.48□□□□□ -1.05
CPSF1-212ENST00000616140 A0A1B0GU33 70 aa8.46□□□□□ -1.05
CPSF1-212ENST00000616140 Q5W150 140 aa8.45□□□□□ -1.06
CPSF1-212ENST00000616140 KRTAP4-16G5E9R7 235 aaPredicted RBP8.45□□□□□ -1.06
CPSF1-212ENST00000616140 Q5VV11 94 aa8.45□□□□□ -1.06
CPSF1-212ENST00000616140 FBN2P35556 2912 aa8.44□□□□□ -1.06
CPSF1-212ENST00000616140 DMXL1Q9Y485 3027 aa8.44□□□□□ -1.06
CPSF1-212ENST00000616140 ZCCHC13Q8WW36 166 aaKnown RBP8.43□□□□□ -1.06
CPSF1-212ENST00000616140 PANO1I0J062 215 aa8.4□□□□□ -1.06
CPSF1-212ENST00000616140 SPINK7P58062 85 aa8.39□□□□□ -1.07
CPSF1-212ENST00000616140 Q6ZSA8 131 aa8.39□□□□□ -1.07
CPSF1-212ENST00000616140 TENM3Q9P273 2699 aa8.37□□□□□ -1.07
CPSF1-212ENST00000616140 MUC3AQ02505 3323 aa8.36□□□□□ -1.07
CPSF1-212ENST00000616140 PRAC1Q96KF2 57 aa8.36□□□□□ -1.07
CPSF1-212ENST00000616140 ASPMQ8IZT6 3477 aa8.35□□□□□ -1.07
CPSF1-212ENST00000616140 KRTAP29-1A8MX34 341 aaPredicted RBP8.33□□□□□ -1.08
CPSF1-212ENST00000616140 KRTAP10-2P60368 255 aa8.33□□□□□ -1.08
CPSF1-212ENST00000616140 KRTAP10-1P60331 282 aa8.31□□□□□ -1.08
CPSF1-212ENST00000616140 DCHS1Q96JQ0 3298 aa8.29□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms