RNA–Protein interactions for RNA: ENST00000613122.4

CTDP1-208, Transcript of CTD phosphatase subunit 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CTDP1, Length 5,866 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDP1-208ENST00000613122 TEP1Q99973 2627 aaKnown RBP12.16□□□□□ -0.46
CTDP1-208ENST00000613122 CENPEQ02224 2701 aa12.16□□□□□ -0.46
CTDP1-208ENST00000613122 Q5W150 140 aa12.16□□□□□ -0.46
CTDP1-208ENST00000613122 LINC00472Q9H8W2 130 aa12.16□□□□□ -0.46
CTDP1-208ENST00000613122 Q1T7F1 81 aa12.15□□□□□ -0.46
CTDP1-208ENST00000613122 LCA10Q71F78 164 aa12.13□□□□□ -0.47
CTDP1-208ENST00000613122 C5orf42Q9H799 3197 aa12.13□□□□□ -0.47
CTDP1-208ENST00000613122 LINC00483Q53H64 154 aa12.12□□□□□ -0.47
CTDP1-208ENST00000613122 LUZP6Q538Z0 58 aa12.08□□□□□ -0.48
CTDP1-208ENST00000613122 DMAC1Q96GE9 116 aa12.08□□□□□ -0.48
CTDP1-208ENST00000613122 R4GN34 69 aa12.06□□□□□ -0.48
CTDP1-208ENST00000613122 CHD9Q3L8U1 2897 aa12.04□□□□□ -0.48
CTDP1-208ENST00000613122 TEX15Q9BXT5 2789 aa12.03□□□□□ -0.48
CTDP1-208ENST00000613122 Q6ZR54 194 aa12.03□□□□□ -0.48
CTDP1-208ENST00000613122 PCNTO95613 3336 aa12.03□□□□□ -0.48
CTDP1-208ENST00000613122 FP248Q71RG6 208 aaPredicted RBP12.02□□□□□ -0.48
CTDP1-208ENST00000613122 BAHCC1Q9P281 2608 aa12.02□□□□□ -0.49
CTDP1-208ENST00000613122 OXTP01178 125 aa12.01□□□□□ -0.49
CTDP1-208ENST00000613122 Q75L30 129 aa11.99□□□□□ -0.49
CTDP1-208ENST00000613122 LINC01558Q9Y6Z2 57 aa11.98□□□□□ -0.49
CTDP1-208ENST00000613122 PANO1I0J062 215 aa11.96□□□□□ -0.49
CTDP1-208ENST00000613122 ZNF292O60281 2723 aa11.92□□□□□ -0.5
CTDP1-208ENST00000613122 COL6A5A8TX70 2615 aa11.92□□□□□ -0.5
CTDP1-208ENST00000613122 CHD6Q8TD26 2715 aa11.91□□□□□ -0.5
CTDP1-208ENST00000613122 AKAP13Q12802 2813 aa11.89□□□□□ -0.51
CTDP1-208ENST00000613122 RANBP2P49792 3224 aaKnown RBP11.86□□□□□ -0.51
CTDP1-208ENST00000613122 MGAQ8IWI9 3026 aa11.86□□□□□ -0.51
CTDP1-208ENST00000613122 NBEAL1Q6ZS30 2694 aa11.83□□□□□ -0.52
CTDP1-208ENST00000613122 A0A087X002 238 aa11.83□□□□□ -0.52
CTDP1-208ENST00000613122 KRTAP4-16G5E9R7 235 aaPredicted RBP11.83□□□□□ -0.52
CTDP1-208ENST00000613122 M0QZ58 72 aa11.81□□□□□ -0.52
CTDP1-208ENST00000613122 HTTP42858 3142 aa11.8□□□□□ -0.52
CTDP1-208ENST00000613122 UNC79Q9P2D8 2635 aa11.79□□□□□ -0.52
CTDP1-208ENST00000613122 TRANK1O15050 2925 aa11.74□□□□□ -0.53
CTDP1-208ENST00000613122 RPL37P61927 97 aaKnown RBP11.72□□□□□ -0.53
CTDP1-208ENST00000613122 PLAC4Q8WY50 150 aa11.72□□□□□ -0.53
CTDP1-208ENST00000613122 Q6ZRN7 208 aaPredicted RBP11.7□□□□□ -0.54
CTDP1-208ENST00000613122 IGSF10Q6WRI0 2623 aa11.7□□□□□ -0.54
CTDP1-208ENST00000613122 ADM2Q7Z4H4 148 aa11.68□□□□□ -0.54
CTDP1-208ENST00000613122 NOTCH1P46531 2555 aa11.68□□□□□ -0.54
CTDP1-208ENST00000613122 CYSTM1Q9H1C7 97 aa11.68□□□□□ -0.54
CTDP1-208ENST00000613122 Q5VV11 94 aa11.67□□□□□ -0.54
CTDP1-208ENST00000613122 H1FX-AS1Q4G0G2 97 aa11.67□□□□□ -0.54
CTDP1-208ENST00000613122 GCN1Q92616 2671 aaKnown RBP11.67□□□□□ -0.54
CTDP1-208ENST00000613122 RPS29P62273 56 aaKnown RBP11.65□□□□□ -0.55
CTDP1-208ENST00000613122 FLG2Q5D862 2391 aaPredicted RBP11.64□□□□□ -0.55
CTDP1-208ENST00000613122 KRTAP21-3Q3LHN1 58 aa11.64□□□□□ -0.55
CTDP1-208ENST00000613122 CFAP54Q96N23 3096 aa11.61□□□□□ -0.55
CTDP1-208ENST00000613122 LAMA3Q16787 3333 aa11.61□□□□□ -0.55
CTDP1-208ENST00000613122 KRTAP29-1A8MX34 341 aaPredicted RBP11.59□□□□□ -0.55
CTDP1-208ENST00000613122 KRTAP11-1Q8IUC1 163 aa11.59□□□□□ -0.55
CTDP1-208ENST00000613122 ASB16-AS1Q495Z4 193 aa11.58□□□□□ -0.56
CTDP1-208ENST00000613122 Q5XG85 94 aa11.58□□□□□ -0.56
CTDP1-208ENST00000613122 DSPP15924 2871 aaKnown RBP11.58□□□□□ -0.56
CTDP1-208ENST00000613122 ROMO1P60602 79 aa11.58□□□□□ -0.56
CTDP1-208ENST00000613122 PRAC1Q96KF2 57 aa11.57□□□□□ -0.56
CTDP1-208ENST00000613122 NOTCH2NLQ7Z3S9 236 aa11.53□□□□□ -0.56
CTDP1-208ENST00000613122 WDFY4Q6ZS81 3184 aa11.5□□□□□ -0.57
CTDP1-208ENST00000613122 MKI67P46013 3256 aaKnown RBP11.49□□□□□ -0.57
CTDP1-208ENST00000613122 SPATA8Q6RVD6 105 aa11.49□□□□□ -0.57
CTDP1-208ENST00000613122 UBR5O95071 2799 aaPredicted RBP11.46□□□□□ -0.58
CTDP1-208ENST00000613122 A0A0C4DFX4 3053 aa11.46□□□□□ -0.58
CTDP1-208ENST00000613122 ITPR2Q14571 2701 aa11.46□□□□□ -0.58
CTDP1-208ENST00000613122 KRTAP13-2Q52LG2 175 aa11.45□□□□□ -0.58
CTDP1-208ENST00000613122 KRTAP7-1Q8IUC3 87 aa11.44□□□□□ -0.58
CTDP1-208ENST00000613122 DMBT1Q9UGM3 2413 aaPredicted RBP11.44□□□□□ -0.58
CTDP1-208ENST00000613122 NBEAL2Q6ZNJ1 2754 aa11.43□□□□□ -0.58
CTDP1-208ENST00000613122 NSD1Q96L73 2696 aaPredicted RBP11.4□□□□□ -0.58
CTDP1-208ENST00000613122 PRUNE2Q8WUY3 3088 aa11.39□□□□□ -0.59
CTDP1-208ENST00000613122 BRCA2P51587 3418 aa11.39□□□□□ -0.59
CTDP1-208ENST00000613122 KRTAP13-1Q8IUC0 172 aa11.37□□□□□ -0.59
CTDP1-208ENST00000613122 A0A0A0MQY5 61 aa11.34□□□□□ -0.59
CTDP1-208ENST00000613122 A8MUU9 505 aa11.34□□□□□ -0.59
CTDP1-208ENST00000613122 STAB2Q8WWQ8 2551 aa11.34□□□□□ -0.59
CTDP1-208ENST00000613122 C20orf166-AS1Q96NR2 134 aa11.32□□□□□ -0.6
CTDP1-208ENST00000613122 MAP1AP78559 2803 aaPredicted RBP11.32□□□□□ -0.6
CTDP1-208ENST00000613122 FRYQ5TBA9 3013 aa11.3□□□□□ -0.6
CTDP1-208ENST00000613122 TRIOO75962 3097 aa11.24□□□□□ -0.61
CTDP1-208ENST00000613122 ITPR1Q14643 2758 aa11.24□□□□□ -0.61
CTDP1-208ENST00000613122 LAMA2P24043 3122 aaKnown RBP11.23□□□□□ -0.61
CTDP1-208ENST00000613122 KMT2BQ9UMN6 2715 aaPredicted RBP11.22□□□□□ -0.61
CTDP1-208ENST00000613122 XIRP2A4UGR9 3374 aa11.14□□□□□ -0.63
CTDP1-208ENST00000613122 REV3LO60673 3130 aa11.11□□□□□ -0.63
CTDP1-208ENST00000613122 A8MU10 97 aa11.11□□□□□ -0.63
CTDP1-208ENST00000613122 H3BS24 57 aa11.11□□□□□ -0.63
CTDP1-208ENST00000613122 HIVEP1P15822 2718 aa11.06□□□□□ -0.64
CTDP1-208ENST00000613122 UNC80Q8N2C7 3258 aa11.06□□□□□ -0.64
CTDP1-208ENST00000613122 VPS13AQ96RL7 3174 aa11.06□□□□□ -0.64
CTDP1-208ENST00000613122 FLNCQ14315 2725 aa11.03□□□□□ -0.64
CTDP1-208ENST00000613122 TENM4Q6N022 2769 aa11.03□□□□□ -0.64
CTDP1-208ENST00000613122 CDH23Q9H251 3354 aa11.01□□□□□ -0.65
CTDP1-208ENST00000613122 TACC2O95359 2948 aa11□□□□□ -0.65
CTDP1-208ENST00000613122 UTP20O75691 2785 aaKnown RBP10.98□□□□□ -0.65
CTDP1-208ENST00000613122 ATMQ13315 3056 aa10.95□□□□□ -0.66
CTDP1-208ENST00000613122 TNP1P09430 55 aa10.92□□□□□ -0.66
CTDP1-208ENST00000613122 DNAH14Q0VDD8 3507 aa10.92□□□□□ -0.66
CTDP1-208ENST00000613122 XP32Q5T750 250 aa10.91□□□□□ -0.66
CTDP1-208ENST00000613122 COL12A1Q99715 3063 aa10.91□□□□□ -0.66
CTDP1-208ENST00000613122 KRTAP1-4P0C5Y4 121 aa10.9□□□□□ -0.67
CTDP1-208ENST00000613122 KRTAP25-1Q3LHN0 102 aa10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 219.7 ms