RNA–Protein interactions for RNA: ENST00000588323.1

VPS4B-203, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 3

Gene VPS4B, Length 463 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-203ENST00000588323 PSENENQ9NZ42 101 aa1.46□□□□□ -2.18
VPS4B-203ENST00000588323 HSPG2P98160 4391 aa1.45□□□□□ -2.18
VPS4B-203ENST00000588323 MUC2Q02817 5179 aa1.45□□□□□ -2.18
VPS4B-203ENST00000588323 ARHGAP32A7KAX9 2087 aa1.45□□□□□ -2.18
VPS4B-203ENST00000588323 DOCK11Q5JSL3 2073 aa1.45□□□□□ -2.18
VPS4B-203ENST00000588323 A0A0G2JQZ4 141 aa1.45□□□□□ -2.18
VPS4B-203ENST00000588323 FAM223BA6NKX1 122 aa1.45□□□□□ -2.18
VPS4B-203ENST00000588323 MRPL33O75394 65 aaKnown RBP1.45□□□□□ -2.18
VPS4B-203ENST00000588323 PPP1R17O96001 155 aa1.45□□□□□ -2.18
VPS4B-203ENST00000588323 MIFP14174 115 aa1.45□□□□□ -2.18
VPS4B-203ENST00000588323 UBE2D3P61077 147 aa1.45□□□□□ -2.18
VPS4B-203ENST00000588323 UBE2D2P62837 147 aa1.45□□□□□ -2.18
VPS4B-203ENST00000588323 ATP5EP2Q5VTU8 51 aa1.45□□□□□ -2.18
VPS4B-203ENST00000588323 Q6JHZ5 121 aa1.45□□□□□ -2.18
VPS4B-203ENST00000588323 BRD3OSQ6XYD6 125 aa1.45□□□□□ -2.18
VPS4B-203ENST00000588323 ZCCHC23Q6ZST2 131 aa1.45□□□□□ -2.18
VPS4B-203ENST00000588323 PPP1R1CQ8WVI7 109 aa1.45□□□□□ -2.18
VPS4B-203ENST00000588323 CYSTM1Q9H1C7 97 aa1.45□□□□□ -2.18
VPS4B-203ENST00000588323 TMEM14BQ9NUH8 114 aa1.45□□□□□ -2.18
VPS4B-203ENST00000588323 DNAH11Q96DT5 4516 aa1.45□□□□□ -2.18
VPS4B-203ENST00000588323 SRRM2Q9UQ35 2752 aaKnown RBP1.45□□□□□ -2.18
VPS4B-203ENST00000588323 DNAH6Q9C0G6 4158 aa1.44□□□□□ -2.18
VPS4B-203ENST00000588323 DYNC1H1Q14204 4646 aaKnown RBP1.44□□□□□ -2.18
VPS4B-203ENST00000588323 TRBV6-7A0A0A0MS04 114 aa1.44□□□□□ -2.18
VPS4B-203ENST00000588323 TRBV6-8A0A0A6YYG3 113 aa1.44□□□□□ -2.18
VPS4B-203ENST00000588323 TRGV4A0A0C4DH28 118 aa1.44□□□□□ -2.18
VPS4B-203ENST00000588323 LY6G6CO95867 125 aa1.44□□□□□ -2.18
VPS4B-203ENST00000588323 ARMS2P0C7Q2 107 aa1.44□□□□□ -2.18
VPS4B-203ENST00000588323 SAA2P0DJI9 122 aaPredicted RBP1.44□□□□□ -2.18
VPS4B-203ENST00000588323 SPAG11BQ08648 103 aa1.44□□□□□ -2.18
VPS4B-203ENST00000588323 SPAG11AQ6PDA7 123 aa1.44□□□□□ -2.18
VPS4B-203ENST00000588323 NMES1Q9C002 83 aa1.44□□□□□ -2.18
VPS4B-203ENST00000588323 HEATR1Q9H583 2144 aaKnown RBP1.44□□□□□ -2.18
VPS4B-203ENST00000588323 MRPL36Q9P0J6 103 aaKnown RBP1.44□□□□□ -2.18
VPS4B-203ENST00000588323 ORMDL1Q9P0S3 153 aa1.44□□□□□ -2.18
VPS4B-203ENST00000588323 A0A087WSZ3 146 aa1.43□□□□□ -2.18
VPS4B-203ENST00000588323 TRBV10-1A0A0K0K1A3 114 aa1.43□□□□□ -2.18
VPS4B-203ENST00000588323 LINC01549A6NIU2 74 aa1.43□□□□□ -2.18
VPS4B-203ENST00000588323 C2orf70A6NJV1 201 aa1.43□□□□□ -2.18
VPS4B-203ENST00000588323 HIGD1CA8MV81 97 aa1.43□□□□□ -2.18
VPS4B-203ENST00000588323 HMGN4O00479 90 aa1.43□□□□□ -2.18
VPS4B-203ENST00000588323 ELOF1P60002 83 aaKnown RBP1.43□□□□□ -2.18
VPS4B-203ENST00000588323 SSBP1Q04837 148 aaKnown RBP1.43□□□□□ -2.18
VPS4B-203ENST00000588323 TPRXLQ17RH7 258 aa1.43□□□□□ -2.18
VPS4B-203ENST00000588323 Q8TAT8 98 aa1.43□□□□□ -2.18
VPS4B-203ENST00000588323 C4orf3Q8WVX3 66 aa1.43□□□□□ -2.18
VPS4B-203ENST00000588323 PRR15LQ9BU68 103 aa1.43□□□□□ -2.18
VPS4B-203ENST00000588323 ABRACLQ9P1F3 81 aa1.43□□□□□ -2.18
VPS4B-203ENST00000588323 C22orf24Q9Y442 160 aa1.43□□□□□ -2.18
VPS4B-203ENST00000588323 FAT4Q6V0I7 4981 aa1.42□□□□□ -2.18
VPS4B-203ENST00000588323 FAT2Q9NYQ8 4349 aa1.42□□□□□ -2.18
VPS4B-203ENST00000588323 TANC2Q9HCD6 1990 aa1.42□□□□□ -2.18
VPS4B-203ENST00000588323 TRAV12-1A0A0B4J245 112 aa1.42□□□□□ -2.18
VPS4B-203ENST00000588323 H3BRN7 92 aa1.42□□□□□ -2.18
VPS4B-203ENST00000588323 IFI6P09912 130 aa1.42□□□□□ -2.18
VPS4B-203ENST00000588323 FAM74A4Q5TZK3 123 aa1.42□□□□□ -2.18
VPS4B-203ENST00000588323 Q5VV11 94 aa1.42□□□□□ -2.18
VPS4B-203ENST00000588323 CSAG1Q6PB30 78 aa1.42□□□□□ -2.18
VPS4B-203ENST00000588323 SMIM4Q8WVI0 70 aa1.42□□□□□ -2.18
VPS4B-203ENST00000588323 DMAC1Q96GE9 116 aa1.42□□□□□ -2.18
VPS4B-203ENST00000588323 UBE2D4Q9Y2X8 147 aa1.42□□□□□ -2.18
VPS4B-203ENST00000588323 R4GMQ9 66 aa1.42□□□□□ -2.18
VPS4B-203ENST00000588323 MYCBP2O75592 4640 aa1.42□□□□□ -2.18
VPS4B-203ENST00000588323 VPS13BQ7Z7G8 4022 aa1.42□□□□□ -2.18
VPS4B-203ENST00000588323 DNAH17Q9UFH2 4485 aa1.41□□□□□ -2.18
VPS4B-203ENST00000588323 DNAH2Q9P225 4427 aa1.41□□□□□ -2.18
VPS4B-203ENST00000588323 APOBP04114 4563 aaKnown RBP1.41□□□□□ -2.18
VPS4B-203ENST00000588323 IGKV3D-7A0A0C4DH55 119 aa1.41□□□□□ -2.18
VPS4B-203ENST00000588323 M0R3E3 92 aa1.41□□□□□ -2.18
VPS4B-203ENST00000588323 IGHV3-33P01772 117 aa1.41□□□□□ -2.18
VPS4B-203ENST00000588323 S100A3P33764 101 aa1.41□□□□□ -2.18
VPS4B-203ENST00000588323 UBE2D1P51668 147 aa1.41□□□□□ -2.18
VPS4B-203ENST00000588323 C9orf163Q8N9P6 203 aa1.41□□□□□ -2.18
VPS4B-203ENST00000588323 SPACA4Q8TDM5 124 aa1.41□□□□□ -2.18
VPS4B-203ENST00000588323 TXNDC17Q9BRA2 123 aa1.41□□□□□ -2.18
VPS4B-203ENST00000588323 CMC2Q9NRP2 79 aa1.41□□□□□ -2.18
VPS4B-203ENST00000588323 CDC42SE2Q9NRR3 84 aa1.41□□□□□ -2.18
VPS4B-203ENST00000588323 NDUFA4L2Q9NRX3 87 aa1.41□□□□□ -2.18
VPS4B-203ENST00000588323 LENEPQ9Y5L5 61 aa1.41□□□□□ -2.18
VPS4B-203ENST00000588323 SNURFQ9Y675 71 aa1.41□□□□□ -2.18
VPS4B-203ENST00000588323 LHFPL6Q9Y693 200 aa1.41□□□□□ -2.18
VPS4B-203ENST00000588323 FCGBPQ9Y6R7 5405 aaPredicted RBP1.41□□□□□ -2.18
VPS4B-203ENST00000588323 KIAA2026Q5HYC2 2103 aa1.4□□□□□ -2.18
VPS4B-203ENST00000588323 FLG2Q5D862 2391 aaPredicted RBP1.4□□□□□ -2.19
VPS4B-203ENST00000588323 DNAH5Q8TE73 4624 aa1.4□□□□□ -2.19
VPS4B-203ENST00000588323 CTXND1A0A1B0GTU2 59 aa1.4□□□□□ -2.19
VPS4B-203ENST00000588323 A0A1B0GUT8 65 aa1.4□□□□□ -2.19
VPS4B-203ENST00000588323 LOC101927531A0A1B0GV80 90 aa1.4□□□□□ -2.19
VPS4B-203ENST00000588323 NUPR2A6NF83 97 aa1.4□□□□□ -2.19
VPS4B-203ENST00000588323 F8VRH5 84 aa1.4□□□□□ -2.19
VPS4B-203ENST00000588323 H3BUX3 64 aa1.4□□□□□ -2.19
VPS4B-203ENST00000588323 J3QRE1 110 aa1.4□□□□□ -2.19
VPS4B-203ENST00000588323 NDUFB1O75438 58 aa1.4□□□□□ -2.19
VPS4B-203ENST00000588323 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP1.4□□□□□ -2.19
VPS4B-203ENST00000588323 WFDC6Q9BQY6 131 aa1.4□□□□□ -2.19
VPS4B-203ENST00000588323 VPS13DQ5THJ4 4388 aa1.4□□□□□ -2.19
VPS4B-203ENST00000588323 LRP1BQ9NZR2 4599 aa1.4□□□□□ -2.19
VPS4B-203ENST00000588323 SORL1Q92673 2214 aa1.39□□□□□ -2.19
VPS4B-203ENST00000588323 TRBV6-5A0A0K0K1A5 114 aa1.39□□□□□ -2.19
VPS4B-203ENST00000588323 TRBV30A0A0K0K1B3 111 aa1.39□□□□□ -2.19
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms