RNA–Protein interactions for RNA: ENST00000561623.5

GTF3C1-202, Transcript of general transcription factor IIIC subunit 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene GTF3C1, Length 7,015 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3C1-202ENST00000561623 STAB1Q9NY15 2570 aa6.37□□□□□ -1.39
GTF3C1-202ENST00000561623 KRTAP1-3Q8IUG1 177 aa6.36□□□□□ -1.39
GTF3C1-202ENST00000561623 PLAC4Q8WY50 150 aa6.36□□□□□ -1.39
GTF3C1-202ENST00000561623 A0A1B0GU33 70 aa6.35□□□□□ -1.39
GTF3C1-202ENST00000561623 CSAG1Q6PB30 78 aa6.35□□□□□ -1.39
GTF3C1-202ENST00000561623 MKI67P46013 3256 aaKnown RBP6.35□□□□□ -1.39
GTF3C1-202ENST00000561623 SEC61BP60468 96 aaKnown RBP6.31□□□□□ -1.4
GTF3C1-202ENST00000561623 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.31□□□□□ -1.4
GTF3C1-202ENST00000561623 KRTAP1-1Q07627 177 aa6.3□□□□□ -1.4
GTF3C1-202ENST00000561623 BRCA2P51587 3418 aa6.28□□□□□ -1.4
GTF3C1-202ENST00000561623 ITPR3Q14573 2671 aa6.27□□□□□ -1.41
GTF3C1-202ENST00000561623 SPRR1AP35321 89 aa6.27□□□□□ -1.41
GTF3C1-202ENST00000561623 DMBT1Q9UGM3 2413 aaPredicted RBP6.26□□□□□ -1.41
GTF3C1-202ENST00000561623 CFAP46Q8IYW2 2715 aa6.26□□□□□ -1.41
GTF3C1-202ENST00000561623 LINC00472Q9H8W2 130 aa6.26□□□□□ -1.41
GTF3C1-202ENST00000561623 CFAP54Q96N23 3096 aa6.26□□□□□ -1.41
GTF3C1-202ENST00000561623 Q5W150 140 aa6.25□□□□□ -1.41
GTF3C1-202ENST00000561623 LAMA3Q16787 3333 aa6.24□□□□□ -1.41
GTF3C1-202ENST00000561623 CHD7Q9P2D1 2997 aa6.24□□□□□ -1.41
GTF3C1-202ENST00000561623 H1FX-AS1Q4G0G2 97 aa6.23□□□□□ -1.41
GTF3C1-202ENST00000561623 NOTCH1P46531 2555 aa6.23□□□□□ -1.41
GTF3C1-202ENST00000561623 TEP1Q99973 2627 aaKnown RBP6.23□□□□□ -1.41
GTF3C1-202ENST00000561623 ZCCHC13Q8WW36 166 aaKnown RBP6.2□□□□□ -1.42
GTF3C1-202ENST00000561623 DMAC1Q96GE9 116 aa6.18□□□□□ -1.42
GTF3C1-202ENST00000561623 KRTAP26-1Q6PEX3 210 aa6.18□□□□□ -1.42
GTF3C1-202ENST00000561623 PRUNE2Q8WUY3 3088 aa6.17□□□□□ -1.42
GTF3C1-202ENST00000561623 CELSR3Q9NYQ7 3312 aa6.17□□□□□ -1.42
GTF3C1-202ENST00000561623 SPRR1BP22528 89 aa6.16□□□□□ -1.42
GTF3C1-202ENST00000561623 FLNAP21333 2647 aaKnown RBP6.14□□□□□ -1.43
GTF3C1-202ENST00000561623 RANBP2P49792 3224 aaKnown RBP6.13□□□□□ -1.43
GTF3C1-202ENST00000561623 CDH23Q9H251 3354 aa6.13□□□□□ -1.43
GTF3C1-202ENST00000561623 PLAC8Q9NZF1 115 aa6.12□□□□□ -1.43
GTF3C1-202ENST00000561623 S4R3F8 94 aa6.12□□□□□ -1.43
GTF3C1-202ENST00000561623 HTTP42858 3142 aa6.11□□□□□ -1.43
GTF3C1-202ENST00000561623 LAMA2P24043 3122 aaKnown RBP6.1□□□□□ -1.43
GTF3C1-202ENST00000561623 KRTAP1-5Q9BYS1 174 aa6.1□□□□□ -1.43
GTF3C1-202ENST00000561623 KRTAP29-1A8MX34 341 aaPredicted RBP6.09□□□□□ -1.43
GTF3C1-202ENST00000561623 ROMO1P60602 79 aa6.09□□□□□ -1.43
GTF3C1-202ENST00000561623 SZT2Q5T011 3432 aa6.08□□□□□ -1.44
GTF3C1-202ENST00000561623 Q6ZR54 194 aa6.08□□□□□ -1.44
GTF3C1-202ENST00000561623 UNC79Q9P2D8 2635 aa6.08□□□□□ -1.44
GTF3C1-202ENST00000561623 SPATA8Q6RVD6 105 aa6.07□□□□□ -1.44
GTF3C1-202ENST00000561623 R4GN34 69 aa6.07□□□□□ -1.44
GTF3C1-202ENST00000561623 DNAH14Q0VDD8 3507 aa6.06□□□□□ -1.44
GTF3C1-202ENST00000561623 KRTAP4-16G5E9R7 235 aaPredicted RBP6.06□□□□□ -1.44
GTF3C1-202ENST00000561623 CHD9Q3L8U1 2897 aa6.06□□□□□ -1.44
GTF3C1-202ENST00000561623 A6NN06 94 aa6.05□□□□□ -1.44
GTF3C1-202ENST00000561623 RPL37P61927 97 aaKnown RBP6.05□□□□□ -1.44
GTF3C1-202ENST00000561623 UNC80Q8N2C7 3258 aa6.05□□□□□ -1.44
GTF3C1-202ENST00000561623 A8MU10 97 aa6.05□□□□□ -1.44
GTF3C1-202ENST00000561623 TEX15Q9BXT5 2789 aa6.05□□□□□ -1.44
GTF3C1-202ENST00000561623 AKAP13Q12802 2813 aa6.04□□□□□ -1.44
GTF3C1-202ENST00000561623 CHD6Q8TD26 2715 aa6.03□□□□□ -1.44
GTF3C1-202ENST00000561623 KRTAP10-1P60331 282 aa6.03□□□□□ -1.44
GTF3C1-202ENST00000561623 A0A087X002 238 aa6.02□□□□□ -1.45
GTF3C1-202ENST00000561623 NOTCH2NLQ7Z3S9 236 aa6.02□□□□□ -1.45
GTF3C1-202ENST00000561623 KRTAP16-1A8MUX0 517 aa6.02□□□□□ -1.45
GTF3C1-202ENST00000561623 ADM2Q7Z4H4 148 aa6.02□□□□□ -1.45
GTF3C1-202ENST00000561623 TRIOO75962 3097 aa6.01□□□□□ -1.45
GTF3C1-202ENST00000561623 KRTAP10-2P60368 255 aa6.01□□□□□ -1.45
GTF3C1-202ENST00000561623 FREM2Q5SZK8 3169 aa6.01□□□□□ -1.45
GTF3C1-202ENST00000561623 PANO1I0J062 215 aa6□□□□□ -1.45
GTF3C1-202ENST00000561623 MGAQ8IWI9 3026 aa6□□□□□ -1.45
GTF3C1-202ENST00000561623 C20orf166-AS1Q96NR2 134 aa6□□□□□ -1.45
GTF3C1-202ENST00000561623 ASB16-AS1Q495Z4 193 aa5.99□□□□□ -1.45
GTF3C1-202ENST00000561623 CENPEQ02224 2701 aa5.98□□□□□ -1.45
GTF3C1-202ENST00000561623 REV3LO60673 3130 aa5.98□□□□□ -1.45
GTF3C1-202ENST00000561623 GCN1Q92616 2671 aaKnown RBP5.98□□□□□ -1.45
GTF3C1-202ENST00000561623 WDFY4Q6ZS81 3184 aa5.97□□□□□ -1.45
GTF3C1-202ENST00000561623 M0QZ58 72 aa5.95□□□□□ -1.46
GTF3C1-202ENST00000561623 KRTAP25-1Q3LHN0 102 aa5.93□□□□□ -1.46
GTF3C1-202ENST00000561623 KRTAP11-1Q8IUC1 163 aa5.93□□□□□ -1.46
GTF3C1-202ENST00000561623 COL6A5A8TX70 2615 aa5.92□□□□□ -1.46
GTF3C1-202ENST00000561623 KRTAP21-3Q3LHN1 58 aa5.92□□□□□ -1.46
GTF3C1-202ENST00000561623 VCANP13611 3396 aa5.92□□□□□ -1.46
GTF3C1-202ENST00000561623 NBEAL1Q6ZS30 2694 aa5.91□□□□□ -1.46
GTF3C1-202ENST00000561623 NBEAL2Q6ZNJ1 2754 aa5.91□□□□□ -1.46
GTF3C1-202ENST00000561623 FRYQ5TBA9 3013 aa5.9□□□□□ -1.46
GTF3C1-202ENST00000561623 STAB2Q8WWQ8 2551 aa5.89□□□□□ -1.47
GTF3C1-202ENST00000561623 KRTAP7-1Q8IUC3 87 aa5.88□□□□□ -1.47
GTF3C1-202ENST00000561623 VPS13AQ96RL7 3174 aa5.88□□□□□ -1.47
GTF3C1-202ENST00000561623 TRANK1O15050 2925 aa5.87□□□□□ -1.47
GTF3C1-202ENST00000561623 COL6A3P12111 3177 aa5.87□□□□□ -1.47
GTF3C1-202ENST00000561623 SPEGQ15772 3267 aa5.86□□□□□ -1.47
GTF3C1-202ENST00000561623 IGSF10Q6WRI0 2623 aa5.85□□□□□ -1.47
GTF3C1-202ENST00000561623 NDUFAF8A1L188 74 aa5.84□□□□□ -1.48
GTF3C1-202ENST00000561623 MAP1AP78559 2803 aaPredicted RBP5.82□□□□□ -1.48
GTF3C1-202ENST00000561623 KALRNO60229 2985 aa5.81□□□□□ -1.48
GTF3C1-202ENST00000561623 NBEAQ8NFP9 2946 aa5.81□□□□□ -1.48
GTF3C1-202ENST00000561623 DSPP15924 2871 aaKnown RBP5.79□□□□□ -1.48
GTF3C1-202ENST00000561623 USP34Q70CQ2 3546 aa5.77□□□□□ -1.49
GTF3C1-202ENST00000561623 SPTBN5Q9NRC6 3674 aaKnown RBP5.77□□□□□ -1.49
GTF3C1-202ENST00000561623 CFAP47Q6ZTR5 3102 aa5.76□□□□□ -1.49
GTF3C1-202ENST00000561623 LAMA1P25391 3075 aa5.76□□□□□ -1.49
GTF3C1-202ENST00000561623 C10orf95Q9H7T3 257 aa5.76□□□□□ -1.49
GTF3C1-202ENST00000561623 CRYBG3Q68DQ2 2970 aa5.75□□□□□ -1.49
GTF3C1-202ENST00000561623 KMT2BQ9UMN6 2715 aaPredicted RBP5.74□□□□□ -1.49
GTF3C1-202ENST00000561623 A8MUU9 505 aa5.72□□□□□ -1.49
GTF3C1-202ENST00000561623 KRTAP13-1Q8IUC0 172 aa5.72□□□□□ -1.49
GTF3C1-202ENST00000561623 KRTAP13-2Q52LG2 175 aa5.71□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 111.7 ms