RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 COX6CP09669 75 aa12.6□□□□□ -0.39
SNX1-210ENST00000560260 SSBP3-AS1Q7Z2R9 100 aa12.6□□□□□ -0.39
SNX1-210ENST00000560260 SNHG12Q9BXW3 62 aa12.58□□□□□ -0.4
SNX1-210ENST00000560260 SCGB1C2P0DMR2 95 aa12.55□□□□□ -0.4
SNX1-210ENST00000560260 SNCGO76070 127 aa12.54□□□□□ -0.4
SNX1-210ENST00000560260 PPDPFLQ8WWR9 84 aa12.54□□□□□ -0.4
SNX1-210ENST00000560260 LST1O00453 97 aa12.53□□□□□ -0.4
SNX1-210ENST00000560260 TAX1BP3O14907 124 aa12.53□□□□□ -0.4
SNX1-210ENST00000560260 OCIAD2Q56VL3 154 aa12.52□□□□□ -0.41
SNX1-210ENST00000560260 A0A0G2JQZ4 141 aa12.51□□□□□ -0.41
SNX1-210ENST00000560260 PCP4L1A6NKN8 68 aa12.51□□□□□ -0.41
SNX1-210ENST00000560260 SPAG11AQ6PDA7 123 aa12.51□□□□□ -0.41
SNX1-210ENST00000560260 H3BUT2 72 aa12.49□□□□□ -0.41
SNX1-210ENST00000560260 TRACP01848 142 aa12.49□□□□□ -0.41
SNX1-210ENST00000560260 TCL1BO95988 128 aa12.48□□□□□ -0.41
SNX1-210ENST00000560260 DNAL4O96015 105 aa12.48□□□□□ -0.41
SNX1-210ENST00000560260 IGLV8-61A0A075B6I0 122 aa12.47□□□□□ -0.41
SNX1-210ENST00000560260 C9orf118A6NHY6 69 aa12.47□□□□□ -0.41
SNX1-210ENST00000560260 F8WEM9 126 aa12.47□□□□□ -0.41
SNX1-210ENST00000560260 C4orf48Q5BLP8 95 aa12.47□□□□□ -0.41
SNX1-210ENST00000560260 SPINK1P00995 79 aa12.45□□□□□ -0.42
SNX1-210ENST00000560260 ORMDL1Q9P0S3 153 aa12.45□□□□□ -0.42
SNX1-210ENST00000560260 HRCT1Q6UXD1 115 aa12.44□□□□□ -0.42
SNX1-210ENST00000560260 RETNLBQ9BQ08 111 aa12.44□□□□□ -0.42
SNX1-210ENST00000560260 FABP2P12104 132 aa12.43□□□□□ -0.42
SNX1-210ENST00000560260 NDUFV3P56181 108 aaKnown RBP12.42□□□□□ -0.42
SNX1-210ENST00000560260 ATXN8Q156A1 80 aa12.41□□□□□ -0.42
SNX1-210ENST00000560260 IGFL1Q6UW32 110 aa12.41□□□□□ -0.42
SNX1-210ENST00000560260 RPS29P62273 56 aaKnown RBP12.4□□□□□ -0.42
SNX1-210ENST00000560260 LRP2P98164 4655 aa12.4□□□□□ -0.42
SNX1-210ENST00000560260 LPAP08519 4548 aa12.4□□□□□ -0.42
SNX1-210ENST00000560260 A0A1W2PPM0 123 aa12.39□□□□□ -0.43
SNX1-210ENST00000560260 LYRM7Q5U5X0 104 aa12.39□□□□□ -0.43
SNX1-210ENST00000560260 GHRHP01286 108 aa12.38□□□□□ -0.43
SNX1-210ENST00000560260 CD164Q04900 197 aa12.38□□□□□ -0.43
SNX1-210ENST00000560260 COL5A1-AS1Q5SY13 56 aa12.38□□□□□ -0.43
SNX1-210ENST00000560260 Q6JHZ5 121 aa12.37□□□□□ -0.43
SNX1-210ENST00000560260 H3BQ85 93 aa12.36□□□□□ -0.43
SNX1-210ENST00000560260 TMEM256-PLSCR3K7ERE1 68 aa12.36□□□□□ -0.43
SNX1-210ENST00000560260 PRR4Q16378 134 aa12.36□□□□□ -0.43
SNX1-210ENST00000560260 H3BMG7 143 aa12.35□□□□□ -0.43
SNX1-210ENST00000560260 TRBV20-1A0A075B6N2 111 aa12.34□□□□□ -0.43
SNX1-210ENST00000560260 A0A1B0GV72 72 aa12.34□□□□□ -0.43
SNX1-210ENST00000560260 UBE2V1Q13404 147 aa12.33□□□□□ -0.44
SNX1-210ENST00000560260 BAALC-AS2P0C853 105 aa12.32□□□□□ -0.44
SNX1-210ENST00000560260 LIMD2Q9BT23 127 aa12.29□□□□□ -0.44
SNX1-210ENST00000560260 C9JAW5 83 aa12.28□□□□□ -0.44
SNX1-210ENST00000560260 ANKRD29Q8N6D5 301 aa12.28□□□□□ -0.44
SNX1-210ENST00000560260 TRBV7-7A0A0K0K1E9 115 aa12.27□□□□□ -0.45
SNX1-210ENST00000560260 Q5XG85 94 aa12.26□□□□□ -0.45
SNX1-210ENST00000560260 SPCS1Q9Y6A9 102 aa12.26□□□□□ -0.45
SNX1-210ENST00000560260 MTURNQ8N3F0 131 aa12.24□□□□□ -0.45
SNX1-210ENST00000560260 UBR4Q5T4S7 5183 aa12.23□□□□□ -0.45
SNX1-210ENST00000560260 A0A1W2PNM2 257 aa12.23□□□□□ -0.45
SNX1-210ENST00000560260 FP248Q71RG6 208 aaPredicted RBP12.23□□□□□ -0.45
SNX1-210ENST00000560260 IGLV7-46A0A075B6I9 117 aa12.22□□□□□ -0.45
SNX1-210ENST00000560260 Q6Q795 121 aa12.22□□□□□ -0.45
SNX1-210ENST00000560260 TRBV7-4A0A0J9YYF1 115 aa12.2□□□□□ -0.46
SNX1-210ENST00000560260 TEN1Q86WV5 123 aa12.19□□□□□ -0.46
SNX1-210ENST00000560260 C1orf195Q5TG92 126 aa12.18□□□□□ -0.46
SNX1-210ENST00000560260 K7EP34 96 aa12.17□□□□□ -0.46
SNX1-210ENST00000560260 RBM3P98179 157 aaKnown RBP12.17□□□□□ -0.46
SNX1-210ENST00000560260 H3BT86 120 aa12.16□□□□□ -0.46
SNX1-210ENST00000560260 A0A087WSZ3 146 aa12.14□□□□□ -0.47
SNX1-210ENST00000560260 ASB16-AS1Q495Z4 193 aa12.14□□□□□ -0.47
SNX1-210ENST00000560260 TPRXLQ17RH7 258 aa12.13□□□□□ -0.47
SNX1-210ENST00000560260 CCKP06307 115 aa12.12□□□□□ -0.47
SNX1-210ENST00000560260 SMCPP49901 116 aaPredicted RBP12.12□□□□□ -0.47
SNX1-210ENST00000560260 OBSCN-AS1Q96MR7 158 aa12.12□□□□□ -0.47
SNX1-210ENST00000560260 KRTAP13-3Q3SY46 172 aa12.11□□□□□ -0.47
SNX1-210ENST00000560260 DSCR8Q96T75 97 aa12.11□□□□□ -0.47
SNX1-210ENST00000560260 JMJD7-PLA2G4BH0Y9G9 81 aa12.11□□□□□ -0.47
SNX1-210ENST00000560260 PRO0461Q9UI25 63 aa12.11□□□□□ -0.47
SNX1-210ENST00000560260 C14orf132Q9NPU4 83 aa12.09□□□□□ -0.47
SNX1-210ENST00000560260 Q6ZQT0 140 aa12.08□□□□□ -0.48
SNX1-210ENST00000560260 VPS25Q9BRG1 176 aa12.08□□□□□ -0.48
SNX1-210ENST00000560260 LOC110117498A0A087WWA1 95 aa12.07□□□□□ -0.48
SNX1-210ENST00000560260 SS18L2Q9UHA2 77 aa12.07□□□□□ -0.48
SNX1-210ENST00000560260 Q96NJ1 140 aa12.04□□□□□ -0.48
SNX1-210ENST00000560260 MUC17Q685J3 4493 aa12.02□□□□□ -0.48
SNX1-210ENST00000560260 GTF2H5Q6ZYL4 71 aa12.02□□□□□ -0.49
SNX1-210ENST00000560260 RNF213Q63HN8 5207 aa12.02□□□□□ -0.49
SNX1-210ENST00000560260 CDIP1Q9H305 208 aa12.01□□□□□ -0.49
SNX1-210ENST00000560260 PDE6GP18545 87 aa11.97□□□□□ -0.49
SNX1-210ENST00000560260 C9orf92A6NGG3 77 aa11.96□□□□□ -0.49
SNX1-210ENST00000560260 LINC00472Q9H8W2 130 aa11.93□□□□□ -0.5
SNX1-210ENST00000560260 XP32Q5T750 250 aa11.92□□□□□ -0.5
SNX1-210ENST00000560260 DEFB116Q30KQ4 102 aa11.89□□□□□ -0.51
SNX1-210ENST00000560260 A0A1B0GV90 55 aa11.88□□□□□ -0.51
SNX1-210ENST00000560260 F8W1H4 67 aa11.88□□□□□ -0.51
SNX1-210ENST00000560260 A0A1B0GW54 56 aa11.87□□□□□ -0.51
SNX1-210ENST00000560260 SIGMAR1Q99720 223 aa11.87□□□□□ -0.51
SNX1-210ENST00000560260 IGKV4-1P06312 121 aa11.86□□□□□ -0.51
SNX1-210ENST00000560260 C21orf62-AS1Q17RA5 79 aa11.86□□□□□ -0.51
SNX1-210ENST00000560260 ETDBQ3ZM63 59 aa11.83□□□□□ -0.52
SNX1-210ENST00000560260 DSCR10P59022 87 aa11.77□□□□□ -0.53
SNX1-210ENST00000560260 MUC2Q02817 5179 aa11.75□□□□□ -0.53
SNX1-210ENST00000560260 NREPQ16612 68 aa11.74□□□□□ -0.53
SNX1-210ENST00000560260 NOTCH2NLQ7Z3S9 236 aa11.74□□□□□ -0.53
SNX1-210ENST00000560260 J3KT08 172 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms