RNA–Protein interactions for RNA: ENST00000556798.1

SHMT2-225, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-225ENST00000556798 RETNLBQ9BQ08 111 aa10.05□□□□□ -0.8
SHMT2-225ENST00000556798 PRR4Q16378 134 aa10.03□□□□□ -0.8
SHMT2-225ENST00000556798 SNCGO76070 127 aa10.02□□□□□ -0.81
SHMT2-225ENST00000556798 SPINK1P00995 79 aa10.01□□□□□ -0.81
SHMT2-225ENST00000556798 COX6CP09669 75 aa10.01□□□□□ -0.81
SHMT2-225ENST00000556798 BATFQ16520 125 aa10.01□□□□□ -0.81
SHMT2-225ENST00000556798 HRCT1Q6UXD1 115 aa10.01□□□□□ -0.81
SHMT2-225ENST00000556798 A0A0G2JQZ4 141 aa10□□□□□ -0.81
SHMT2-225ENST00000556798 F8WEM9 126 aa10□□□□□ -0.81
SHMT2-225ENST00000556798 A0A1B0GX51 115 aa9.99□□□□□ -0.81
SHMT2-225ENST00000556798 PPDPFLQ8WWR9 84 aa9.98□□□□□ -0.81
SHMT2-225ENST00000556798 LPAP08519 4548 aa9.97□□□□□ -0.81
SHMT2-225ENST00000556798 SCGB1C2P0DMR2 95 aa9.97□□□□□ -0.81
SHMT2-225ENST00000556798 NAA38Q9BRA0 125 aaKnown RBP9.97□□□□□ -0.81
SHMT2-225ENST00000556798 OCIAD2Q56VL3 154 aa9.96□□□□□ -0.82
SHMT2-225ENST00000556798 SNHG12Q9BXW3 62 aa9.96□□□□□ -0.82
SHMT2-225ENST00000556798 LRP2P98164 4655 aa9.96□□□□□ -0.82
SHMT2-225ENST00000556798 DNAL4O96015 105 aa9.94□□□□□ -0.82
SHMT2-225ENST00000556798 RPS29P62273 56 aaKnown RBP9.94□□□□□ -0.82
SHMT2-225ENST00000556798 H3BUT2 72 aa9.92□□□□□ -0.82
SHMT2-225ENST00000556798 FABP2P12104 132 aa9.92□□□□□ -0.82
SHMT2-225ENST00000556798 IGLV8-61A0A075B6I0 122 aa9.91□□□□□ -0.82
SHMT2-225ENST00000556798 LST1O00453 97 aa9.91□□□□□ -0.82
SHMT2-225ENST00000556798 CD164Q04900 197 aa9.91□□□□□ -0.82
SHMT2-225ENST00000556798 ORMDL1Q9P0S3 153 aa9.91□□□□□ -0.82
SHMT2-225ENST00000556798 NDUFV3P56181 108 aaKnown RBP9.9□□□□□ -0.82
SHMT2-225ENST00000556798 IGFL1Q6UW32 110 aa9.9□□□□□ -0.82
SHMT2-225ENST00000556798 Q6JHZ5 121 aa9.89□□□□□ -0.83
SHMT2-225ENST00000556798 IGLV7-46A0A075B6I9 117 aa9.88□□□□□ -0.83
SHMT2-225ENST00000556798 GHRHP01286 108 aa9.88□□□□□ -0.83
SHMT2-225ENST00000556798 TRACP01848 142 aa9.88□□□□□ -0.83
SHMT2-225ENST00000556798 LIMD2Q9BT23 127 aa9.88□□□□□ -0.83
SHMT2-225ENST00000556798 TCL1BO95988 128 aa9.86□□□□□ -0.83
SHMT2-225ENST00000556798 UBR4Q5T4S7 5183 aa9.86□□□□□ -0.83
SHMT2-225ENST00000556798 A0A1B0GV72 72 aa9.85□□□□□ -0.83
SHMT2-225ENST00000556798 FP248Q71RG6 208 aaPredicted RBP9.85□□□□□ -0.83
SHMT2-225ENST00000556798 H3BMG7 143 aa9.84□□□□□ -0.83
SHMT2-225ENST00000556798 TAX1BP3O14907 124 aa9.83□□□□□ -0.84
SHMT2-225ENST00000556798 H3BQ85 93 aa9.82□□□□□ -0.84
SHMT2-225ENST00000556798 TMEM256-PLSCR3K7ERE1 68 aa9.82□□□□□ -0.84
SHMT2-225ENST00000556798 ATXN8Q156A1 80 aa9.82□□□□□ -0.84
SHMT2-225ENST00000556798 C9orf118A6NHY6 69 aa9.81□□□□□ -0.84
SHMT2-225ENST00000556798 TRBV7-7A0A0K0K1E9 115 aa9.8□□□□□ -0.84
SHMT2-225ENST00000556798 LYRM7Q5U5X0 104 aa9.8□□□□□ -0.84
SHMT2-225ENST00000556798 PCP4L1A6NKN8 68 aa9.79□□□□□ -0.84
SHMT2-225ENST00000556798 TPRXLQ17RH7 258 aa9.79□□□□□ -0.84
SHMT2-225ENST00000556798 Q5XG85 94 aa9.79□□□□□ -0.84
SHMT2-225ENST00000556798 UBE2V1Q13404 147 aa9.78□□□□□ -0.84
SHMT2-225ENST00000556798 BAALC-AS2P0C853 105 aa9.77□□□□□ -0.85
SHMT2-225ENST00000556798 A0A1W2PPM0 123 aa9.75□□□□□ -0.85
SHMT2-225ENST00000556798 KRTAP13-3Q3SY46 172 aa9.75□□□□□ -0.85
SHMT2-225ENST00000556798 C1orf195Q5TG92 126 aa9.75□□□□□ -0.85
SHMT2-225ENST00000556798 ANKRD29Q8N6D5 301 aa9.75□□□□□ -0.85
SHMT2-225ENST00000556798 CDIP1Q9H305 208 aa9.75□□□□□ -0.85
SHMT2-225ENST00000556798 TRBV20-1A0A075B6N2 111 aa9.74□□□□□ -0.85
SHMT2-225ENST00000556798 A0A1W2PNM2 257 aa9.73□□□□□ -0.85
SHMT2-225ENST00000556798 Q6Q795 121 aa9.73□□□□□ -0.85
SHMT2-225ENST00000556798 TEN1Q86WV5 123 aa9.73□□□□□ -0.85
SHMT2-225ENST00000556798 COL5A1-AS1Q5SY13 56 aa9.72□□□□□ -0.85
SHMT2-225ENST00000556798 C9JAW5 83 aa9.71□□□□□ -0.86
SHMT2-225ENST00000556798 A0A087WSZ3 146 aa9.69□□□□□ -0.86
SHMT2-225ENST00000556798 ASB16-AS1Q495Z4 193 aa9.69□□□□□ -0.86
SHMT2-225ENST00000556798 RBM3P98179 157 aaKnown RBP9.68□□□□□ -0.86
SHMT2-225ENST00000556798 TRBV7-4A0A0J9YYF1 115 aa9.67□□□□□ -0.86
SHMT2-225ENST00000556798 MTURNQ8N3F0 131 aa9.67□□□□□ -0.86
SHMT2-225ENST00000556798 CCKP06307 115 aa9.66□□□□□ -0.86
SHMT2-225ENST00000556798 SS18L2Q9UHA2 77 aa9.66□□□□□ -0.86
SHMT2-225ENST00000556798 SPCS1Q9Y6A9 102 aa9.66□□□□□ -0.86
SHMT2-225ENST00000556798 C9orf92A6NGG3 77 aa9.65□□□□□ -0.86
SHMT2-225ENST00000556798 DSCR8Q96T75 97 aa9.65□□□□□ -0.86
SHMT2-225ENST00000556798 VPS25Q9BRG1 176 aa9.65□□□□□ -0.86
SHMT2-225ENST00000556798 RNF213Q63HN8 5207 aa9.64□□□□□ -0.87
SHMT2-225ENST00000556798 JMJD7-PLA2G4BH0Y9G9 81 aa9.61□□□□□ -0.87
SHMT2-225ENST00000556798 MUC17Q685J3 4493 aa9.6□□□□□ -0.87
SHMT2-225ENST00000556798 H3BT86 120 aa9.6□□□□□ -0.87
SHMT2-225ENST00000556798 XP32Q5T750 250 aa9.6□□□□□ -0.87
SHMT2-225ENST00000556798 Q96NJ1 140 aa9.58□□□□□ -0.88
SHMT2-225ENST00000556798 C14orf132Q9NPU4 83 aa9.58□□□□□ -0.88
SHMT2-225ENST00000556798 K7EP34 96 aa9.56□□□□□ -0.88
SHMT2-225ENST00000556798 Q6ZQT0 140 aa9.56□□□□□ -0.88
SHMT2-225ENST00000556798 OBSCN-AS1Q96MR7 158 aa9.56□□□□□ -0.88
SHMT2-225ENST00000556798 LOC110117498A0A087WWA1 95 aa9.55□□□□□ -0.88
SHMT2-225ENST00000556798 SMCPP49901 116 aaPredicted RBP9.52□□□□□ -0.89
SHMT2-225ENST00000556798 SIGMAR1Q99720 223 aa9.52□□□□□ -0.89
SHMT2-225ENST00000556798 DEFB116Q30KQ4 102 aa9.51□□□□□ -0.89
SHMT2-225ENST00000556798 PDE6GP18545 87 aa9.5□□□□□ -0.89
SHMT2-225ENST00000556798 IGKV4-1P06312 121 aa9.49□□□□□ -0.89
SHMT2-225ENST00000556798 LINC00472Q9H8W2 130 aa9.49□□□□□ -0.89
SHMT2-225ENST00000556798 PRO0461Q9UI25 63 aa9.49□□□□□ -0.89
SHMT2-225ENST00000556798 SEC61BP60468 96 aaKnown RBP9.47□□□□□ -0.89
SHMT2-225ENST00000556798 MUC2Q02817 5179 aa9.47□□□□□ -0.89
SHMT2-225ENST00000556798 GTF2H5Q6ZYL4 71 aa9.46□□□□□ -0.9
SHMT2-225ENST00000556798 C21orf62-AS1Q17RA5 79 aa9.44□□□□□ -0.9
SHMT2-225ENST00000556798 A0A1B0GW54 56 aa9.42□□□□□ -0.9
SHMT2-225ENST00000556798 DSCR10P59022 87 aa9.42□□□□□ -0.9
SHMT2-225ENST00000556798 RPL37P61927 97 aaKnown RBP9.41□□□□□ -0.9
SHMT2-225ENST00000556798 PCOTHQ58A44 107 aa9.41□□□□□ -0.9
SHMT2-225ENST00000556798 KRTAP4-1Q9BYQ7 146 aa9.39□□□□□ -0.91
SHMT2-225ENST00000556798 IGHV6-1A0A0B4J1U7 121 aa9.37□□□□□ -0.91
SHMT2-225ENST00000556798 NOTCH2NLQ7Z3S9 236 aa9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms