RNA–Protein interactions for RNA: ENST00000552130.6

VPS29-210, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,057 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-210ENST00000552130 RPS27P42677 84 aaKnown RBP2.06□□□□□ -2.08
VPS29-210ENST00000552130 RPS27LQ71UM5 84 aaKnown RBP2.06□□□□□ -2.08
VPS29-210ENST00000552130 TTC28Q96AY4 2481 aa2.06□□□□□ -2.08
VPS29-210ENST00000552130 POLQO75417 2590 aa2.05□□□□□ -2.08
VPS29-210ENST00000552130 MEGF8Q7Z7M0 2845 aa2.04□□□□□ -2.08
VPS29-210ENST00000552130 ABCA12Q86UK0 2595 aa2.04□□□□□ -2.08
VPS29-210ENST00000552130 HELZ2Q9BYK8 2649 aaKnown RBP2.03□□□□□ -2.08
VPS29-210ENST00000552130 SRCAPQ6ZRS2 3230 aa2.02□□□□□ -2.09
VPS29-210ENST00000552130 NDUFA1O15239 70 aa2.02□□□□□ -2.09
VPS29-210ENST00000552130 PDE4DIPQ5VU43 2346 aa2□□□□□ -2.09
VPS29-210ENST00000552130 MUC6Q6W4X9 2439 aa1.99□□□□□ -2.09
VPS29-210ENST00000552130 IGF2RP11717 2491 aa1.98□□□□□ -2.09
VPS29-210ENST00000552130 DSPP15924 2871 aaKnown RBP1.98□□□□□ -2.09
VPS29-210ENST00000552130 TPRP12270 2363 aaKnown RBP1.98□□□□□ -2.09
VPS29-210ENST00000552130 CHD9Q3L8U1 2897 aa1.98□□□□□ -2.09
VPS29-210ENST00000552130 DUOX1Q9NRD9 1551 aa1.98□□□□□ -2.09
VPS29-210ENST00000552130 WT1-ASQ06250 92 aa1.96□□□□□ -2.1
VPS29-210ENST00000552130 ABCA2Q9BZC7 2435 aa1.95□□□□□ -2.1
VPS29-210ENST00000552130 CRCT1Q9UGL9 99 aa1.95□□□□□ -2.1
VPS29-210ENST00000552130 TRANK1O15050 2925 aa1.94□□□□□ -2.1
VPS29-210ENST00000552130 WFDC10BQ8IUB3 73 aa1.93□□□□□ -2.1
VPS29-210ENST00000552130 UTRNP46939 3433 aa1.93□□□□□ -2.1
VPS29-210ENST00000552130 AKAP6Q13023 2319 aa1.92□□□□□ -2.1
VPS29-210ENST00000552130 PCNX1Q96RV3 2341 aa1.92□□□□□ -2.1
VPS29-210ENST00000552130 KRTAP4-1Q9BYQ7 146 aa1.9□□□□□ -2.11
VPS29-210ENST00000552130 KAAG1Q9UBP8 84 aa1.9□□□□□ -2.11
VPS29-210ENST00000552130 CSPG4Q6UVK1 2322 aa1.9□□□□□ -2.11
VPS29-210ENST00000552130 CELSR2Q9HCU4 2923 aa1.89□□□□□ -2.11
VPS29-210ENST00000552130 H3BUA1 57 aa1.89□□□□□ -2.11
VPS29-210ENST00000552130 DEFB109BQ30KR1 87 aa1.88□□□□□ -2.11
VPS29-210ENST00000552130 CEP350Q5VT06 3117 aa1.88□□□□□ -2.11
VPS29-210ENST00000552130 BDP1A6H8Y1 2624 aa1.87□□□□□ -2.11
VPS29-210ENST00000552130 GOLGB1Q14789 3259 aaKnown RBP1.86□□□□□ -2.11
VPS29-210ENST00000552130 S4R3F8 94 aa1.86□□□□□ -2.11
VPS29-210ENST00000552130 PIEZO1Q92508 2521 aa1.84□□□□□ -2.11
VPS29-210ENST00000552130 ATRQ13535 2644 aa1.83□□□□□ -2.12
VPS29-210ENST00000552130 SPTA1P02549 2419 aa1.82□□□□□ -2.12
VPS29-210ENST00000552130 IGLV5-48A0A075B6I7 105 aa1.82□□□□□ -2.12
VPS29-210ENST00000552130 PRLHP81277 87 aa1.82□□□□□ -2.12
VPS29-210ENST00000552130 CSMD3Q7Z407 3707 aa1.8□□□□□ -2.12
VPS29-210ENST00000552130 DEFB106AQ8N104 65 aa1.8□□□□□ -2.12
VPS29-210ENST00000552130 Q9Y3F1 56 aa1.8□□□□□ -2.12
VPS29-210ENST00000552130 ANK2Q01484 3957 aa1.79□□□□□ -2.12
VPS29-210ENST00000552130 FCGBPQ9Y6R7 5405 aaPredicted RBP1.78□□□□□ -2.12
VPS29-210ENST00000552130 DEFB131AP59861 70 aa1.78□□□□□ -2.12
VPS29-210ENST00000552130 TNRC18O15417 2968 aaPredicted RBP1.78□□□□□ -2.12
VPS29-210ENST00000552130 PCNTO95613 3336 aa1.77□□□□□ -2.13
VPS29-210ENST00000552130 CHD6Q8TD26 2715 aa1.77□□□□□ -2.13
VPS29-210ENST00000552130 MMP24-AS1A0A0U1RRL7 71 aa1.75□□□□□ -2.13
VPS29-210ENST00000552130 HECTD1Q9ULT8 2610 aa1.74□□□□□ -2.13
VPS29-210ENST00000552130 HTTP42858 3142 aa1.73□□□□□ -2.13
VPS29-210ENST00000552130 PRRC2CQ9Y520 2896 aaKnown RBP1.73□□□□□ -2.13
VPS29-210ENST00000552130 CEP290O15078 2479 aa1.72□□□□□ -2.13
VPS29-210ENST00000552130 VWFP04275 2813 aa1.72□□□□□ -2.13
VPS29-210ENST00000552130 TENM4Q6N022 2769 aa1.72□□□□□ -2.13
VPS29-210ENST00000552130 SPINK6Q6UWN8 80 aa1.71□□□□□ -2.14
VPS29-210ENST00000552130 BRCA2P51587 3418 aa1.71□□□□□ -2.14
VPS29-210ENST00000552130 POLR2KP53803 58 aaKnown RBP1.7□□□□□ -2.14
VPS29-210ENST00000552130 PKD1L2Q7Z442 2459 aa1.7□□□□□ -2.14
VPS29-210ENST00000552130 MKI67P46013 3256 aaKnown RBP1.7□□□□□ -2.14
VPS29-210ENST00000552130 CHD8Q9HCK8 2581 aa1.69□□□□□ -2.14
VPS29-210ENST00000552130 CREBBPQ92793 2442 aa1.69□□□□□ -2.14
VPS29-210ENST00000552130 FBN2P35556 2912 aa1.69□□□□□ -2.14
VPS29-210ENST00000552130 AKAP13Q12802 2813 aa1.68□□□□□ -2.14
VPS29-210ENST00000552130 NOP10Q9NPE3 64 aaKnown RBP1.68□□□□□ -2.14
VPS29-210ENST00000552130 SZT2Q5T011 3432 aa1.68□□□□□ -2.14
VPS29-210ENST00000552130 CACNA1AO00555 2505 aa1.67□□□□□ -2.14
VPS29-210ENST00000552130 RPL39P62891 51 aaKnown RBP1.67□□□□□ -2.14
VPS29-210ENST00000552130 SPTBN5Q9NRC6 3674 aaKnown RBP1.67□□□□□ -2.14
VPS29-210ENST00000552130 NCOR1O75376 2440 aa1.67□□□□□ -2.14
VPS29-210ENST00000552130 LAMA3Q16787 3333 aa1.66□□□□□ -2.14
VPS29-210ENST00000552130 RANBP2P49792 3224 aaKnown RBP1.66□□□□□ -2.14
VPS29-210ENST00000552130 CD52P31358 61 aa1.66□□□□□ -2.14
VPS29-210ENST00000552130 COL6A3P12111 3177 aa1.66□□□□□ -2.14
VPS29-210ENST00000552130 CENPFP49454 3210 aa1.66□□□□□ -2.14
VPS29-210ENST00000552130 MUC3AQ02505 3323 aa1.65□□□□□ -2.14
VPS29-210ENST00000552130 SMR3AQ99954 134 aa1.65□□□□□ -2.15
VPS29-210ENST00000552130 UNC80Q8N2C7 3258 aa1.64□□□□□ -2.15
VPS29-210ENST00000552130 CDH23Q9H251 3354 aa1.63□□□□□ -2.15
VPS29-210ENST00000552130 UNC79Q9P2D8 2635 aa1.63□□□□□ -2.15
VPS29-210ENST00000552130 DEFB135Q30KP9 77 aa1.63□□□□□ -2.15
VPS29-210ENST00000552130 APCP25054 2843 aa1.63□□□□□ -2.15
VPS29-210ENST00000552130 XIRP2A4UGR9 3374 aa1.63□□□□□ -2.15
VPS29-210ENST00000552130 A0A0C4DFX4 3053 aa1.63□□□□□ -2.15
VPS29-210ENST00000552130 VCANP13611 3396 aa1.62□□□□□ -2.15
VPS29-210ENST00000552130 H0YGG7 62 aa1.62□□□□□ -2.15
VPS29-210ENST00000552130 PRUNE2Q8WUY3 3088 aa1.61□□□□□ -2.15
VPS29-210ENST00000552130 EYSQ5T1H1 3165 aa1.61□□□□□ -2.15
VPS29-210ENST00000552130 BSNQ9UPA5 3926 aa1.6□□□□□ -2.15
VPS29-210ENST00000552130 FRAS1Q86XX4 4008 aa1.6□□□□□ -2.15
VPS29-210ENST00000552130 SPINK1P00995 79 aa1.6□□□□□ -2.15
VPS29-210ENST00000552130 SRRM2Q9UQ35 2752 aaKnown RBP1.59□□□□□ -2.15
VPS29-210ENST00000552130 ZFHX4Q86UP3 3567 aa1.59□□□□□ -2.15
VPS29-210ENST00000552130 RPL39LQ96EH5 51 aaKnown RBP1.59□□□□□ -2.15
VPS29-210ENST00000552130 ARHGAP5-AS1Q96IT6 56 aa1.59□□□□□ -2.15
VPS29-210ENST00000552130 EP300Q09472 2414 aaPredicted RBP1.59□□□□□ -2.16
VPS29-210ENST00000552130 M0R2T5 61 aa1.58□□□□□ -2.16
VPS29-210ENST00000552130 OTOGQ6ZRI0 2925 aa1.58□□□□□ -2.16
VPS29-210ENST00000552130 CELSR1Q9NYQ6 3014 aa1.58□□□□□ -2.16
VPS29-210ENST00000552130 DEFB124Q8NES8 71 aa1.57□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 72.3 ms