RNA–Protein interactions for RNA: ENST00000490557.1

HMGB1P38-201, Transcript of high mobility group box 1 pseudogene 38, humanhuman

BASIC

Gene HMGB1P38, Length 577 nt, Biotype processed pseudogene.

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P38-201ENST00000490557 PDE4DIPQ5VU43 2346 aa0.95□□□□□ -2.26
HMGB1P38-201ENST00000490557 RPS27P42677 84 aaKnown RBP0.93□□□□□ -2.26
HMGB1P38-201ENST00000490557 RPS27LQ71UM5 84 aaKnown RBP0.93□□□□□ -2.26
HMGB1P38-201ENST00000490557 FBN2P35556 2912 aa0.93□□□□□ -2.26
HMGB1P38-201ENST00000490557 TOGARAM1Q9Y4F4 1720 aa0.92□□□□□ -2.26
HMGB1P38-201ENST00000490557 ABCA2Q9BZC7 2435 aa0.92□□□□□ -2.26
HMGB1P38-201ENST00000490557 TOP2AP11388 1531 aaKnown RBP0.91□□□□□ -2.26
HMGB1P38-201ENST00000490557 SPTA1P02549 2419 aa0.9□□□□□ -2.26
HMGB1P38-201ENST00000490557 REV3LO60673 3130 aa0.9□□□□□ -2.27
HMGB1P38-201ENST00000490557 WT1-ASQ06250 92 aa0.9□□□□□ -2.27
HMGB1P38-201ENST00000490557 KRTAP19-3Q7Z4W3 81 aa0.9□□□□□ -2.27
HMGB1P38-201ENST00000490557 SMR3AQ99954 134 aa0.9□□□□□ -2.27
HMGB1P38-201ENST00000490557 CHD9Q3L8U1 2897 aa0.9□□□□□ -2.27
HMGB1P38-201ENST00000490557 CDC42BPAQ5VT25 1732 aa0.89□□□□□ -2.27
HMGB1P38-201ENST00000490557 CELSR2Q9HCU4 2923 aa0.89□□□□□ -2.27
HMGB1P38-201ENST00000490557 TENM3Q9P273 2699 aa0.88□□□□□ -2.27
HMGB1P38-201ENST00000490557 H3BUA1 57 aa0.88□□□□□ -2.27
HMGB1P38-201ENST00000490557 TFF3Q07654 80 aa0.87□□□□□ -2.27
HMGB1P38-201ENST00000490557 SMIM2Q9BVW6 85 aa0.87□□□□□ -2.27
HMGB1P38-201ENST00000490557 U3KQA8 63 aa0.87□□□□□ -2.27
HMGB1P38-201ENST00000490557 LMO7Q8WWI1 1683 aa0.87□□□□□ -2.27
HMGB1P38-201ENST00000490557 FAM208AQ9UK61 1670 aaKnown RBP0.87□□□□□ -2.27
HMGB1P38-201ENST00000490557 CSPG4Q6UVK1 2322 aa0.87□□□□□ -2.27
HMGB1P38-201ENST00000490557 KRTAP2-3P0C7H8 128 aa0.86□□□□□ -2.27
HMGB1P38-201ENST00000490557 DEFB106AQ8N104 65 aa0.86□□□□□ -2.27
HMGB1P38-201ENST00000490557 KRTAP2-4Q9BYR9 128 aa0.86□□□□□ -2.27
HMGB1P38-201ENST00000490557 KRTAP2-1Q9BYU5 128 aa0.86□□□□□ -2.27
HMGB1P38-201ENST00000490557 H0YGG7 62 aa0.85□□□□□ -2.27
HMGB1P38-201ENST00000490557 S4R3F8 94 aa0.85□□□□□ -2.27
HMGB1P38-201ENST00000490557 DEFB135Q30KP9 77 aa0.84□□□□□ -2.27
HMGB1P38-201ENST00000490557 ZNF469Q96JG9 3925 aaPredicted RBP0.84□□□□□ -2.28
HMGB1P38-201ENST00000490557 M0R2T5 61 aa0.83□□□□□ -2.28
HMGB1P38-201ENST00000490557 PRLHP81277 87 aa0.83□□□□□ -2.28
HMGB1P38-201ENST00000490557 WFDC10BQ8IUB3 73 aa0.83□□□□□ -2.28
HMGB1P38-201ENST00000490557 DDX60Q8IY21 1712 aaKnown RBP0.83□□□□□ -2.28
HMGB1P38-201ENST00000490557 CHD8Q9HCK8 2581 aa0.83□□□□□ -2.28
HMGB1P38-201ENST00000490557 IQGAP1P46940 1657 aa0.82□□□□□ -2.28
HMGB1P38-201ENST00000490557 KAAG1Q9UBP8 84 aa0.82□□□□□ -2.28
HMGB1P38-201ENST00000490557 CHD6Q8TD26 2715 aa0.82□□□□□ -2.28
HMGB1P38-201ENST00000490557 CSMD3Q7Z407 3707 aa0.82□□□□□ -2.28
HMGB1P38-201ENST00000490557 PCNX1Q96RV3 2341 aa0.82□□□□□ -2.28
HMGB1P38-201ENST00000490557 ATRQ13535 2644 aa0.82□□□□□ -2.28
HMGB1P38-201ENST00000490557 ALMS1Q8TCU4 4167 aa0.82□□□□□ -2.28
HMGB1P38-201ENST00000490557 NCOR1O75376 2440 aa0.81□□□□□ -2.28
HMGB1P38-201ENST00000490557 TENM4Q6N022 2769 aa0.81□□□□□ -2.28
HMGB1P38-201ENST00000490557 IGF2RP11717 2491 aa0.8□□□□□ -2.28
HMGB1P38-201ENST00000490557 APCP25054 2843 aa0.8□□□□□ -2.28
HMGB1P38-201ENST00000490557 PTPN13Q12923 2485 aa0.8□□□□□ -2.28
HMGB1P38-201ENST00000490557 DSPP15924 2871 aaKnown RBP0.79□□□□□ -2.28
HMGB1P38-201ENST00000490557 TRANK1O15050 2925 aa0.79□□□□□ -2.28
HMGB1P38-201ENST00000490557 ZFYVE26Q68DK2 2539 aa0.79□□□□□ -2.28
HMGB1P38-201ENST00000490557 ATP7AQ04656 1500 aa0.79□□□□□ -2.28
HMGB1P38-201ENST00000490557 FRAS1Q86XX4 4008 aa0.79□□□□□ -2.28
HMGB1P38-201ENST00000490557 VWFP04275 2813 aa0.78□□□□□ -2.28
HMGB1P38-201ENST00000490557 NDUFA1O15239 70 aa0.78□□□□□ -2.28
HMGB1P38-201ENST00000490557 KIF21BO75037 1637 aa0.78□□□□□ -2.29
HMGB1P38-201ENST00000490557 NOP10Q9NPE3 64 aaKnown RBP0.77□□□□□ -2.29
HMGB1P38-201ENST00000490557 NFAT5O94916 1531 aa0.77□□□□□ -2.29
HMGB1P38-201ENST00000490557 EP300Q09472 2414 aaPredicted RBP0.77□□□□□ -2.29
HMGB1P38-201ENST00000490557 HECTD1Q9ULT8 2610 aa0.76□□□□□ -2.29
HMGB1P38-201ENST00000490557 SAMD9LQ8IVG5 1584 aa0.75□□□□□ -2.29
HMGB1P38-201ENST00000490557 ANK2Q01484 3957 aa0.75□□□□□ -2.29
HMGB1P38-201ENST00000490557 CREBBPQ92793 2442 aa0.75□□□□□ -2.29
HMGB1P38-201ENST00000490557 TRPM2O94759 1503 aa0.74□□□□□ -2.29
HMGB1P38-201ENST00000490557 PKD1L2Q7Z442 2459 aa0.74□□□□□ -2.29
HMGB1P38-201ENST00000490557 DEFB131AP59861 70 aa0.73□□□□□ -2.29
HMGB1P38-201ENST00000490557 UNC79Q9P2D8 2635 aa0.72□□□□□ -2.29
HMGB1P38-201ENST00000490557 IGLV5-48A0A075B6I7 105 aa0.72□□□□□ -2.29
HMGB1P38-201ENST00000490557 PRM1P04553 51 aa0.72□□□□□ -2.29
HMGB1P38-201ENST00000490557 CEP290O15078 2479 aa0.71□□□□□ -2.3
HMGB1P38-201ENST00000490557 MAP1BP46821 2468 aaKnown RBP0.7□□□□□ -2.3
HMGB1P38-201ENST00000490557 NBASA2RRP1 2371 aa0.69□□□□□ -2.3
HMGB1P38-201ENST00000490557 WNK1Q9H4A3 2382 aa0.69□□□□□ -2.3
HMGB1P38-201ENST00000490557 MMP24-AS1A0A0U1RRL7 71 aa0.68□□□□□ -2.3
HMGB1P38-201ENST00000490557 APC2O95996 2303 aa0.67□□□□□ -2.3
HMGB1P38-201ENST00000490557 SNRPGP62308 76 aaKnown RBP0.67□□□□□ -2.3
HMGB1P38-201ENST00000490557 AKAP13Q12802 2813 aa0.67□□□□□ -2.3
HMGB1P38-201ENST00000490557 HIVEP3Q5T1R4 2406 aa0.67□□□□□ -2.3
HMGB1P38-201ENST00000490557 OTOGQ6ZRI0 2925 aa0.67□□□□□ -2.3
HMGB1P38-201ENST00000490557 M0QY20 66 aa0.66□□□□□ -2.3
HMGB1P38-201ENST00000490557 CLTCL1P53675 1640 aa0.66□□□□□ -2.3
HMGB1P38-201ENST00000490557 TNXBP22105 4242 aa0.65□□□□□ -2.31
HMGB1P38-201ENST00000490557 C9orf92A6NGG3 77 aa0.64□□□□□ -2.31
HMGB1P38-201ENST00000490557 NAV2Q8IVL1 2488 aa0.64□□□□□ -2.31
HMGB1P38-201ENST00000490557 PRRC2CQ9Y520 2896 aaKnown RBP0.64□□□□□ -2.31
HMGB1P38-201ENST00000490557 USP24Q9UPU5 2620 aa0.64□□□□□ -2.31
HMGB1P38-201ENST00000490557 ACANP16112 2415 aa0.64□□□□□ -2.31
HMGB1P38-201ENST00000490557 BSNQ9UPA5 3926 aa0.63□□□□□ -2.31
HMGB1P38-201ENST00000490557 A8MTW9 85 aa0.63□□□□□ -2.31
HMGB1P38-201ENST00000490557 H3BNG1 76 aa0.63□□□□□ -2.31
HMGB1P38-201ENST00000490557 NCOR2Q9Y618 2525 aa0.63□□□□□ -2.31
HMGB1P38-201ENST00000490557 UBR5O95071 2799 aaPredicted RBP0.62□□□□□ -2.31
HMGB1P38-201ENST00000490557 PKD1L1Q8TDX9 2849 aa0.61□□□□□ -2.31
HMGB1P38-201ENST00000490557 KRTAP21-1Q3LI58 79 aa0.61□□□□□ -2.31
HMGB1P38-201ENST00000490557 FAT2Q9NYQ8 4349 aa0.61□□□□□ -2.31
HMGB1P38-201ENST00000490557 TNRC18O15417 2968 aaPredicted RBP0.6□□□□□ -2.31
HMGB1P38-201ENST00000490557 SPRR2DP22532 72 aa0.6□□□□□ -2.31
HMGB1P38-201ENST00000490557 CELSR1Q9NYQ6 3014 aa0.59□□□□□ -2.31
HMGB1P38-201ENST00000490557 SYNE1Q8NF91 8797 aaKnown RBP0.59□□□□□ -2.32
HMGB1P38-201ENST00000490557 SETXQ7Z333 2677 aaKnown RBP0.58□□□□□ -2.32
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms