RNA–Protein interactions for RNA: ENST00000490557.1

HMGB1P38-201, Transcript of high mobility group box 1 pseudogene 38, humanhuman

BASIC

Gene HMGB1P38, Length 577 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P38-201ENST00000490557 PDE4DIPQ5VU43 2346 aa0.95□□□□□ -2.26
HMGB1P38-201ENST00000490557 RPS27P42677 84 aaKnown RBP0.93□□□□□ -2.26
HMGB1P38-201ENST00000490557 RPS27LQ71UM5 84 aaKnown RBP0.93□□□□□ -2.26
HMGB1P38-201ENST00000490557 FBN2P35556 2912 aa0.93□□□□□ -2.26
HMGB1P38-201ENST00000490557 TOGARAM1Q9Y4F4 1720 aa0.92□□□□□ -2.26
HMGB1P38-201ENST00000490557 ABCA2Q9BZC7 2435 aa0.92□□□□□ -2.26
HMGB1P38-201ENST00000490557 TOP2AP11388 1531 aaKnown RBP0.91□□□□□ -2.26
HMGB1P38-201ENST00000490557 SPTA1P02549 2419 aa0.9□□□□□ -2.26
HMGB1P38-201ENST00000490557 REV3LO60673 3130 aa0.9□□□□□ -2.27
HMGB1P38-201ENST00000490557 WT1-ASQ06250 92 aa0.9□□□□□ -2.27
HMGB1P38-201ENST00000490557 KRTAP19-3Q7Z4W3 81 aa0.9□□□□□ -2.27
HMGB1P38-201ENST00000490557 SMR3AQ99954 134 aa0.9□□□□□ -2.27
HMGB1P38-201ENST00000490557 CHD9Q3L8U1 2897 aa0.9□□□□□ -2.27
HMGB1P38-201ENST00000490557 CDC42BPAQ5VT25 1732 aa0.89□□□□□ -2.27
HMGB1P38-201ENST00000490557 CELSR2Q9HCU4 2923 aa0.89□□□□□ -2.27
HMGB1P38-201ENST00000490557 TENM3Q9P273 2699 aa0.88□□□□□ -2.27
HMGB1P38-201ENST00000490557 H3BUA1 57 aa0.88□□□□□ -2.27
HMGB1P38-201ENST00000490557 TFF3Q07654 80 aa0.87□□□□□ -2.27
HMGB1P38-201ENST00000490557 SMIM2Q9BVW6 85 aa0.87□□□□□ -2.27
HMGB1P38-201ENST00000490557 U3KQA8 63 aa0.87□□□□□ -2.27
HMGB1P38-201ENST00000490557 LMO7Q8WWI1 1683 aa0.87□□□□□ -2.27
HMGB1P38-201ENST00000490557 FAM208AQ9UK61 1670 aaKnown RBP0.87□□□□□ -2.27
HMGB1P38-201ENST00000490557 CSPG4Q6UVK1 2322 aa0.87□□□□□ -2.27
HMGB1P38-201ENST00000490557 KRTAP2-3P0C7H8 128 aa0.86□□□□□ -2.27
HMGB1P38-201ENST00000490557 DEFB106AQ8N104 65 aa0.86□□□□□ -2.27
HMGB1P38-201ENST00000490557 KRTAP2-4Q9BYR9 128 aa0.86□□□□□ -2.27
HMGB1P38-201ENST00000490557 KRTAP2-1Q9BYU5 128 aa0.86□□□□□ -2.27
HMGB1P38-201ENST00000490557 H0YGG7 62 aa0.85□□□□□ -2.27
HMGB1P38-201ENST00000490557 S4R3F8 94 aa0.85□□□□□ -2.27
HMGB1P38-201ENST00000490557 DEFB135Q30KP9 77 aa0.84□□□□□ -2.27
HMGB1P38-201ENST00000490557 ZNF469Q96JG9 3925 aaPredicted RBP0.84□□□□□ -2.28
HMGB1P38-201ENST00000490557 M0R2T5 61 aa0.83□□□□□ -2.28
HMGB1P38-201ENST00000490557 PRLHP81277 87 aa0.83□□□□□ -2.28
HMGB1P38-201ENST00000490557 WFDC10BQ8IUB3 73 aa0.83□□□□□ -2.28
HMGB1P38-201ENST00000490557 DDX60Q8IY21 1712 aaKnown RBP0.83□□□□□ -2.28
HMGB1P38-201ENST00000490557 CHD8Q9HCK8 2581 aa0.83□□□□□ -2.28
HMGB1P38-201ENST00000490557 IQGAP1P46940 1657 aa0.82□□□□□ -2.28
HMGB1P38-201ENST00000490557 KAAG1Q9UBP8 84 aa0.82□□□□□ -2.28
HMGB1P38-201ENST00000490557 CHD6Q8TD26 2715 aa0.82□□□□□ -2.28
HMGB1P38-201ENST00000490557 CSMD3Q7Z407 3707 aa0.82□□□□□ -2.28
HMGB1P38-201ENST00000490557 PCNX1Q96RV3 2341 aa0.82□□□□□ -2.28
HMGB1P38-201ENST00000490557 ATRQ13535 2644 aa0.82□□□□□ -2.28
HMGB1P38-201ENST00000490557 ALMS1Q8TCU4 4167 aa0.82□□□□□ -2.28
HMGB1P38-201ENST00000490557 NCOR1O75376 2440 aa0.81□□□□□ -2.28
HMGB1P38-201ENST00000490557 TENM4Q6N022 2769 aa0.81□□□□□ -2.28
HMGB1P38-201ENST00000490557 IGF2RP11717 2491 aa0.8□□□□□ -2.28
HMGB1P38-201ENST00000490557 APCP25054 2843 aa0.8□□□□□ -2.28
HMGB1P38-201ENST00000490557 PTPN13Q12923 2485 aa0.8□□□□□ -2.28
HMGB1P38-201ENST00000490557 DSPP15924 2871 aaKnown RBP0.79□□□□□ -2.28
HMGB1P38-201ENST00000490557 TRANK1O15050 2925 aa0.79□□□□□ -2.28
HMGB1P38-201ENST00000490557 ZFYVE26Q68DK2 2539 aa0.79□□□□□ -2.28
HMGB1P38-201ENST00000490557 ATP7AQ04656 1500 aa0.79□□□□□ -2.28
HMGB1P38-201ENST00000490557 FRAS1Q86XX4 4008 aa0.79□□□□□ -2.28
HMGB1P38-201ENST00000490557 VWFP04275 2813 aa0.78□□□□□ -2.28
HMGB1P38-201ENST00000490557 NDUFA1O15239 70 aa0.78□□□□□ -2.28
HMGB1P38-201ENST00000490557 KIF21BO75037 1637 aa0.78□□□□□ -2.29
HMGB1P38-201ENST00000490557 NOP10Q9NPE3 64 aaKnown RBP0.77□□□□□ -2.29
HMGB1P38-201ENST00000490557 NFAT5O94916 1531 aa0.77□□□□□ -2.29
HMGB1P38-201ENST00000490557 EP300Q09472 2414 aaPredicted RBP0.77□□□□□ -2.29
HMGB1P38-201ENST00000490557 HECTD1Q9ULT8 2610 aa0.76□□□□□ -2.29
HMGB1P38-201ENST00000490557 SAMD9LQ8IVG5 1584 aa0.75□□□□□ -2.29
HMGB1P38-201ENST00000490557 ANK2Q01484 3957 aa0.75□□□□□ -2.29
HMGB1P38-201ENST00000490557 CREBBPQ92793 2442 aa0.75□□□□□ -2.29
HMGB1P38-201ENST00000490557 TRPM2O94759 1503 aa0.74□□□□□ -2.29
HMGB1P38-201ENST00000490557 PKD1L2Q7Z442 2459 aa0.74□□□□□ -2.29
HMGB1P38-201ENST00000490557 DEFB131AP59861 70 aa0.73□□□□□ -2.29
HMGB1P38-201ENST00000490557 UNC79Q9P2D8 2635 aa0.72□□□□□ -2.29
HMGB1P38-201ENST00000490557 IGLV5-48A0A075B6I7 105 aa0.72□□□□□ -2.29
HMGB1P38-201ENST00000490557 PRM1P04553 51 aa0.72□□□□□ -2.29
HMGB1P38-201ENST00000490557 CEP290O15078 2479 aa0.71□□□□□ -2.3
HMGB1P38-201ENST00000490557 MAP1BP46821 2468 aaKnown RBP0.7□□□□□ -2.3
HMGB1P38-201ENST00000490557 NBASA2RRP1 2371 aa0.69□□□□□ -2.3
HMGB1P38-201ENST00000490557 WNK1Q9H4A3 2382 aa0.69□□□□□ -2.3
HMGB1P38-201ENST00000490557 MMP24-AS1A0A0U1RRL7 71 aa0.68□□□□□ -2.3
HMGB1P38-201ENST00000490557 APC2O95996 2303 aa0.67□□□□□ -2.3
HMGB1P38-201ENST00000490557 SNRPGP62308 76 aaKnown RBP0.67□□□□□ -2.3
HMGB1P38-201ENST00000490557 AKAP13Q12802 2813 aa0.67□□□□□ -2.3
HMGB1P38-201ENST00000490557 HIVEP3Q5T1R4 2406 aa0.67□□□□□ -2.3
HMGB1P38-201ENST00000490557 OTOGQ6ZRI0 2925 aa0.67□□□□□ -2.3
HMGB1P38-201ENST00000490557 M0QY20 66 aa0.66□□□□□ -2.3
HMGB1P38-201ENST00000490557 CLTCL1P53675 1640 aa0.66□□□□□ -2.3
HMGB1P38-201ENST00000490557 TNXBP22105 4242 aa0.65□□□□□ -2.31
HMGB1P38-201ENST00000490557 C9orf92A6NGG3 77 aa0.64□□□□□ -2.31
HMGB1P38-201ENST00000490557 NAV2Q8IVL1 2488 aa0.64□□□□□ -2.31
HMGB1P38-201ENST00000490557 PRRC2CQ9Y520 2896 aaKnown RBP0.64□□□□□ -2.31
HMGB1P38-201ENST00000490557 USP24Q9UPU5 2620 aa0.64□□□□□ -2.31
HMGB1P38-201ENST00000490557 ACANP16112 2415 aa0.64□□□□□ -2.31
HMGB1P38-201ENST00000490557 BSNQ9UPA5 3926 aa0.63□□□□□ -2.31
HMGB1P38-201ENST00000490557 A8MTW9 85 aa0.63□□□□□ -2.31
HMGB1P38-201ENST00000490557 H3BNG1 76 aa0.63□□□□□ -2.31
HMGB1P38-201ENST00000490557 NCOR2Q9Y618 2525 aa0.63□□□□□ -2.31
HMGB1P38-201ENST00000490557 UBR5O95071 2799 aaPredicted RBP0.62□□□□□ -2.31
HMGB1P38-201ENST00000490557 PKD1L1Q8TDX9 2849 aa0.61□□□□□ -2.31
HMGB1P38-201ENST00000490557 KRTAP21-1Q3LI58 79 aa0.61□□□□□ -2.31
HMGB1P38-201ENST00000490557 FAT2Q9NYQ8 4349 aa0.61□□□□□ -2.31
HMGB1P38-201ENST00000490557 TNRC18O15417 2968 aaPredicted RBP0.6□□□□□ -2.31
HMGB1P38-201ENST00000490557 SPRR2DP22532 72 aa0.6□□□□□ -2.31
HMGB1P38-201ENST00000490557 CELSR1Q9NYQ6 3014 aa0.59□□□□□ -2.31
HMGB1P38-201ENST00000490557 SYNE1Q8NF91 8797 aaKnown RBP0.59□□□□□ -2.32
HMGB1P38-201ENST00000490557 SETXQ7Z333 2677 aaKnown RBP0.58□□□□□ -2.32
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms