RNA–Protein interactions for RNA: ENST00000473258.1

COL6A3-210, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 5,433 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-210ENST00000473258 KRTAP21-3Q3LHN1 58 aa5.51□□□□□ -1.53
COL6A3-210ENST00000473258 SPEGQ15772 3267 aa5.5□□□□□ -1.53
COL6A3-210ENST00000473258 SZT2Q5T011 3432 aa5.5□□□□□ -1.53
COL6A3-210ENST00000473258 LCE6AA0A183 80 aa5.49□□□□□ -1.53
COL6A3-210ENST00000473258 A0A1W2PPR1 153 aa5.49□□□□□ -1.53
COL6A3-210ENST00000473258 KRTAP29-1A8MX34 341 aaPredicted RBP5.49□□□□□ -1.53
COL6A3-210ENST00000473258 PANO1I0J062 215 aa5.49□□□□□ -1.53
COL6A3-210ENST00000473258 COL4A4P53420 1690 aaPredicted RBP5.48□□□□□ -1.53
COL6A3-210ENST00000473258 BPTFQ12830 3046 aa5.48□□□□□ -1.53
COL6A3-210ENST00000473258 FASNP49327 2511 aaKnown RBP5.47□□□□□ -1.53
COL6A3-210ENST00000473258 DNAH12Q6ZR08 3092 aa5.47□□□□□ -1.53
COL6A3-210ENST00000473258 R4GN34 69 aa5.47□□□□□ -1.53
COL6A3-210ENST00000473258 KRTAP10-9P60411 292 aa5.46□□□□□ -1.54
COL6A3-210ENST00000473258 Q8NDZ9 215 aa5.46□□□□□ -1.54
COL6A3-210ENST00000473258 EPG5Q9HCE0 2579 aa5.46□□□□□ -1.54
COL6A3-210ENST00000473258 KRTAP11-1Q8IUC1 163 aa5.46□□□□□ -1.54
COL6A3-210ENST00000473258 SPRR1AP35321 89 aa5.45□□□□□ -1.54
COL6A3-210ENST00000473258 S4R3F8 94 aa5.45□□□□□ -1.54
COL6A3-210ENST00000473258 HTTP42858 3142 aa5.44□□□□□ -1.54
COL6A3-210ENST00000473258 REV3LO60673 3130 aa5.42□□□□□ -1.54
COL6A3-210ENST00000473258 SPRR1BP22528 89 aa5.42□□□□□ -1.54
COL6A3-210ENST00000473258 NOTCH2NLQ7Z3S9 236 aa5.42□□□□□ -1.54
COL6A3-210ENST00000473258 KRTAP26-1Q6PEX3 210 aa5.41□□□□□ -1.54
COL6A3-210ENST00000473258 UNC80Q8N2C7 3258 aa5.41□□□□□ -1.54
COL6A3-210ENST00000473258 LTBP2Q14767 1821 aa5.41□□□□□ -1.54
COL6A3-210ENST00000473258 K7EIL1 84 aa5.4□□□□□ -1.54
COL6A3-210ENST00000473258 KRTAP4-16G5E9R7 235 aaPredicted RBP5.39□□□□□ -1.55
COL6A3-210ENST00000473258 COL27A1Q8IZC6 1860 aaPredicted RBP5.38□□□□□ -1.55
COL6A3-210ENST00000473258 EYSQ5T1H1 3165 aa5.38□□□□□ -1.55
COL6A3-210ENST00000473258 WDR87Q6ZQQ6 2873 aa5.38□□□□□ -1.55
COL6A3-210ENST00000473258 IGF2RP11717 2491 aa5.38□□□□□ -1.55
COL6A3-210ENST00000473258 MKI67P46013 3256 aaKnown RBP5.36□□□□□ -1.55
COL6A3-210ENST00000473258 M0QZ58 72 aa5.35□□□□□ -1.55
COL6A3-210ENST00000473258 MUC22E2RYF6 1773 aaPredicted RBP5.35□□□□□ -1.55
COL6A3-210ENST00000473258 USP24Q9UPU5 2620 aa5.34□□□□□ -1.56
COL6A3-210ENST00000473258 A0A087WTM6 91 aa5.33□□□□□ -1.56
COL6A3-210ENST00000473258 Q6ZSA8 131 aa5.32□□□□□ -1.56
COL6A3-210ENST00000473258 SPTBN5Q9NRC6 3674 aaKnown RBP5.3□□□□□ -1.56
COL6A3-210ENST00000473258 C10orf95Q9H7T3 257 aa5.3□□□□□ -1.56
COL6A3-210ENST00000473258 FLNBO75369 2602 aaKnown RBP5.29□□□□□ -1.56
COL6A3-210ENST00000473258 CFAP54Q96N23 3096 aa5.29□□□□□ -1.56
COL6A3-210ENST00000473258 A0A0C4DFX4 3053 aa5.26□□□□□ -1.57
COL6A3-210ENST00000473258 PP632Q6XCG6 107 aa5.26□□□□□ -1.57
COL6A3-210ENST00000473258 P0C880 135 aa5.25□□□□□ -1.57
COL6A3-210ENST00000473258 STAB2Q8WWQ8 2551 aa5.25□□□□□ -1.57
COL6A3-210ENST00000473258 BAHCC1Q9P281 2608 aa5.22□□□□□ -1.57
COL6A3-210ENST00000473258 DMDP11532 3685 aa5.22□□□□□ -1.57
COL6A3-210ENST00000473258 HECTD1Q9ULT8 2610 aa5.2□□□□□ -1.58
COL6A3-210ENST00000473258 SMR3BP02814 79 aaPredicted RBP5.18□□□□□ -1.58
COL6A3-210ENST00000473258 Q5VSD8 79 aa5.16□□□□□ -1.58
COL6A3-210ENST00000473258 PLAC8Q9NZF1 115 aa5.14□□□□□ -1.59
COL6A3-210ENST00000473258 ANKRD11Q6UB99 2663 aaPredicted RBP5.14□□□□□ -1.59
COL6A3-210ENST00000473258 NBEAL1Q6ZS30 2694 aa5.13□□□□□ -1.59
COL6A3-210ENST00000473258 MGAM2Q2M2H8 2515 aa5.13□□□□□ -1.59
COL6A3-210ENST00000473258 COL6A3P12111 3177 aa5.13□□□□□ -1.59
COL6A3-210ENST00000473258 CEP295Q9C0D2 2601 aa5.12□□□□□ -1.59
COL6A3-210ENST00000473258 C5orf42Q9H799 3197 aa5.12□□□□□ -1.59
COL6A3-210ENST00000473258 ASPMQ8IZT6 3477 aa5.11□□□□□ -1.59
COL6A3-210ENST00000473258 MUC3AQ02505 3323 aa5.11□□□□□ -1.59
COL6A3-210ENST00000473258 SPENQ96T58 3664 aaKnown RBP5.09□□□□□ -1.59
COL6A3-210ENST00000473258 PRUNE2Q8WUY3 3088 aa5.09□□□□□ -1.59
COL6A3-210ENST00000473258 TNP1P09430 55 aa5.09□□□□□ -1.59
COL6A3-210ENST00000473258 ZFHX4Q86UP3 3567 aa5.08□□□□□ -1.6
COL6A3-210ENST00000473258 AKAP13Q12802 2813 aa5.08□□□□□ -1.6
COL6A3-210ENST00000473258 H0YAA0 97 aa5.08□□□□□ -1.6
COL6A3-210ENST00000473258 ATRQ13535 2644 aa5.08□□□□□ -1.6
COL6A3-210ENST00000473258 CENPEQ02224 2701 aa5.07□□□□□ -1.6
COL6A3-210ENST00000473258 VPS13AQ96RL7 3174 aa5.07□□□□□ -1.6
COL6A3-210ENST00000473258 KRTAP10-11P60412 298 aa5.07□□□□□ -1.6
COL6A3-210ENST00000473258 NOTCH1P46531 2555 aa5.05□□□□□ -1.6
COL6A3-210ENST00000473258 HELZ2Q9BYK8 2649 aaKnown RBP5.04□□□□□ -1.6
COL6A3-210ENST00000473258 LOC400499M0QZD8 3231 aa5.03□□□□□ -1.6
COL6A3-210ENST00000473258 STAB1Q9NY15 2570 aa5.03□□□□□ -1.6
COL6A3-210ENST00000473258 KRTAP10-8P60410 259 aa5.02□□□□□ -1.61
COL6A3-210ENST00000473258 TEP1Q99973 2627 aaKnown RBP5.01□□□□□ -1.61
COL6A3-210ENST00000473258 PRRC2CQ9Y520 2896 aaKnown RBP5□□□□□ -1.61
COL6A3-210ENST00000473258 LAMA1P25391 3075 aa4.99□□□□□ -1.61
COL6A3-210ENST00000473258 TRANK1O15050 2925 aa4.99□□□□□ -1.61
COL6A3-210ENST00000473258 FREM2Q5SZK8 3169 aa4.98□□□□□ -1.61
COL6A3-210ENST00000473258 WDFY4Q6ZS81 3184 aa4.98□□□□□ -1.61
COL6A3-210ENST00000473258 UNC79Q9P2D8 2635 aa4.98□□□□□ -1.61
COL6A3-210ENST00000473258 CHD9Q3L8U1 2897 aa4.97□□□□□ -1.61
COL6A3-210ENST00000473258 COL4A2P08572 1712 aa4.97□□□□□ -1.61
COL6A3-210ENST00000473258 CHD7Q9P2D1 2997 aa4.96□□□□□ -1.62
COL6A3-210ENST00000473258 MAST4O15021 2626 aa4.96□□□□□ -1.62
COL6A3-210ENST00000473258 KRTAP10-3P60369 221 aa4.96□□□□□ -1.62
COL6A3-210ENST00000473258 RELNP78509 3460 aa4.95□□□□□ -1.62
COL6A3-210ENST00000473258 CELSR3Q9NYQ7 3312 aa4.95□□□□□ -1.62
COL6A3-210ENST00000473258 ZFHX3Q15911 3703 aa4.95□□□□□ -1.62
COL6A3-210ENST00000473258 TNRC18O15417 2968 aaPredicted RBP4.94□□□□□ -1.62
COL6A3-210ENST00000473258 DCHS1Q96JQ0 3298 aa4.94□□□□□ -1.62
COL6A3-210ENST00000473258 NSD1Q96L73 2696 aaPredicted RBP4.93□□□□□ -1.62
COL6A3-210ENST00000473258 SETXQ7Z333 2677 aaKnown RBP4.93□□□□□ -1.62
COL6A3-210ENST00000473258 FRYLO94915 3013 aa4.92□□□□□ -1.62
COL6A3-210ENST00000473258 ITPR3Q14573 2671 aa4.89□□□□□ -1.63
COL6A3-210ENST00000473258 IGSF10Q6WRI0 2623 aa4.89□□□□□ -1.63
COL6A3-210ENST00000473258 TRIOO75962 3097 aa4.89□□□□□ -1.63
COL6A3-210ENST00000473258 CHD6Q8TD26 2715 aa4.89□□□□□ -1.63
COL6A3-210ENST00000473258 COL6A5A8TX70 2615 aa4.86□□□□□ -1.63
COL6A3-210ENST00000473258 SMG1Q96Q15 3661 aaKnown RBP4.85□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 68.1 ms