RNA–Protein interactions for RNA: ENST00000465461.6

CUX1-207, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 502 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-207ENST00000465461 TMEM238LA0A1B0GVL6 79 aa6.67□□□□□ -1.34
CUX1-207ENST00000465461 A6NJY4 79 aa6.67□□□□□ -1.34
CUX1-207ENST00000465461 BVES-AS1Q5T3Y7 98 aa6.67□□□□□ -1.34
CUX1-207ENST00000465461 HRCT1Q6UXD1 115 aa6.67□□□□□ -1.34
CUX1-207ENST00000465461 Q6ZQY7 126 aa6.67□□□□□ -1.34
CUX1-207ENST00000465461 FAM218AQ96MZ4 157 aa6.66□□□□□ -1.34
CUX1-207ENST00000465461 LPAP08519 4548 aa6.65□□□□□ -1.35
CUX1-207ENST00000465461 SPINK1P00995 79 aa6.64□□□□□ -1.35
CUX1-207ENST00000465461 TRIAP1O43715 76 aa6.63□□□□□ -1.35
CUX1-207ENST00000465461 XP32Q5T750 250 aa6.63□□□□□ -1.35
CUX1-207ENST00000465461 CTAG1AP78358 180 aa6.62□□□□□ -1.35
CUX1-207ENST00000465461 LRP2P98164 4655 aa6.61□□□□□ -1.35
CUX1-207ENST00000465461 H0YGX0 51 aa6.61□□□□□ -1.35
CUX1-207ENST00000465461 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP6.61□□□□□ -1.35
CUX1-207ENST00000465461 CLEC2BQ92478 149 aa6.61□□□□□ -1.35
CUX1-207ENST00000465461 IGLV7-46A0A075B6I9 117 aa6.6□□□□□ -1.35
CUX1-207ENST00000465461 TSTD3H0UI37 97 aa6.6□□□□□ -1.35
CUX1-207ENST00000465461 PSMB2P49721 201 aa6.6□□□□□ -1.35
CUX1-207ENST00000465461 UBR4Q5T4S7 5183 aa6.57□□□□□ -1.36
CUX1-207ENST00000465461 F8WEM9 126 aa6.57□□□□□ -1.36
CUX1-207ENST00000465461 RPS29P62273 56 aaKnown RBP6.57□□□□□ -1.36
CUX1-207ENST00000465461 SNHG12Q9BXW3 62 aa6.57□□□□□ -1.36
CUX1-207ENST00000465461 H3BUT2 72 aa6.55□□□□□ -1.36
CUX1-207ENST00000465461 SNCGO76070 127 aa6.55□□□□□ -1.36
CUX1-207ENST00000465461 OCIAD2Q56VL3 154 aa6.55□□□□□ -1.36
CUX1-207ENST00000465461 NAA38Q9BRA0 125 aaKnown RBP6.55□□□□□ -1.36
CUX1-207ENST00000465461 M0R143 59 aa6.54□□□□□ -1.36
CUX1-207ENST00000465461 IGFL1Q6UW32 110 aa6.54□□□□□ -1.36
CUX1-207ENST00000465461 A0A1B0GX51 115 aa6.53□□□□□ -1.36
CUX1-207ENST00000465461 COX6CP09669 75 aa6.53□□□□□ -1.36
CUX1-207ENST00000465461 SCGB1C2P0DMR2 95 aa6.53□□□□□ -1.36
CUX1-207ENST00000465461 FABP2P12104 132 aa6.53□□□□□ -1.36
CUX1-207ENST00000465461 CD164Q04900 197 aa6.53□□□□□ -1.36
CUX1-207ENST00000465461 BATFQ16520 125 aa6.53□□□□□ -1.36
CUX1-207ENST00000465461 FP248Q71RG6 208 aaPredicted RBP6.53□□□□□ -1.36
CUX1-207ENST00000465461 PPDPFLQ8WWR9 84 aa6.53□□□□□ -1.36
CUX1-207ENST00000465461 IGLV8-61A0A075B6I0 122 aa6.52□□□□□ -1.37
CUX1-207ENST00000465461 NDUFV3P56181 108 aaKnown RBP6.52□□□□□ -1.37
CUX1-207ENST00000465461 TPRXLQ17RH7 258 aa6.52□□□□□ -1.37
CUX1-207ENST00000465461 LIMD2Q9BT23 127 aa6.52□□□□□ -1.37
CUX1-207ENST00000465461 A0A1B0GV72 72 aa6.51□□□□□ -1.37
CUX1-207ENST00000465461 CDIP1Q9H305 208 aa6.51□□□□□ -1.37
CUX1-207ENST00000465461 DNAL4O96015 105 aa6.5□□□□□ -1.37
CUX1-207ENST00000465461 KRTAP13-3Q3SY46 172 aa6.5□□□□□ -1.37
CUX1-207ENST00000465461 Q6JHZ5 121 aa6.5□□□□□ -1.37
CUX1-207ENST00000465461 KRTAP4-8Q9BYQ9 185 aa6.5□□□□□ -1.37
CUX1-207ENST00000465461 ORMDL1Q9P0S3 153 aa6.49□□□□□ -1.37
CUX1-207ENST00000465461 H3BMG7 143 aa6.48□□□□□ -1.37
CUX1-207ENST00000465461 TRBV7-7A0A0K0K1E9 115 aa6.47□□□□□ -1.37
CUX1-207ENST00000465461 LST1O00453 97 aa6.47□□□□□ -1.37
CUX1-207ENST00000465461 C1orf195Q5TG92 126 aa6.47□□□□□ -1.37
CUX1-207ENST00000465461 Q5XG85 94 aa6.47□□□□□ -1.37
CUX1-207ENST00000465461 TCL1BO95988 128 aa6.45□□□□□ -1.38
CUX1-207ENST00000465461 GHRHP01286 108 aa6.45□□□□□ -1.38
CUX1-207ENST00000465461 TRACP01848 142 aa6.45□□□□□ -1.38
CUX1-207ENST00000465461 C9orf92A6NGG3 77 aa6.44□□□□□ -1.38
CUX1-207ENST00000465461 TMEM256-PLSCR3K7ERE1 68 aa6.44□□□□□ -1.38
CUX1-207ENST00000465461 PCP4L1A6NKN8 68 aa6.43□□□□□ -1.38
CUX1-207ENST00000465461 A0A1W2PNM2 257 aa6.42□□□□□ -1.38
CUX1-207ENST00000465461 BAALC-AS2P0C853 105 aa6.41□□□□□ -1.38
CUX1-207ENST00000465461 ATXN8Q156A1 80 aa6.41□□□□□ -1.38
CUX1-207ENST00000465461 TEN1Q86WV5 123 aa6.41□□□□□ -1.38
CUX1-207ENST00000465461 ANKRD29Q8N6D5 301 aa6.41□□□□□ -1.38
CUX1-207ENST00000465461 H3BQ85 93 aa6.4□□□□□ -1.38
CUX1-207ENST00000465461 TAX1BP3O14907 124 aa6.4□□□□□ -1.38
CUX1-207ENST00000465461 UBE2V1Q13404 147 aa6.4□□□□□ -1.38
CUX1-207ENST00000465461 Q6Q795 121 aa6.4□□□□□ -1.38
CUX1-207ENST00000465461 A0A087WSZ3 146 aa6.39□□□□□ -1.39
CUX1-207ENST00000465461 C9orf118A6NHY6 69 aa6.39□□□□□ -1.39
CUX1-207ENST00000465461 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.39□□□□□ -1.39
CUX1-207ENST00000465461 KRTAP9-2Q9BYQ4 174 aa6.39□□□□□ -1.39
CUX1-207ENST00000465461 RNF213Q63HN8 5207 aa6.38□□□□□ -1.39
CUX1-207ENST00000465461 ASB16-AS1Q495Z4 193 aa6.38□□□□□ -1.39
CUX1-207ENST00000465461 KRTAP9-6A0A140TA67 174 aa6.35□□□□□ -1.39
CUX1-207ENST00000465461 C9JAW5 83 aa6.35□□□□□ -1.39
CUX1-207ENST00000465461 CCKP06307 115 aa6.35□□□□□ -1.39
CUX1-207ENST00000465461 RBM3P98179 157 aaKnown RBP6.35□□□□□ -1.39
CUX1-207ENST00000465461 LYRM7Q5U5X0 104 aa6.35□□□□□ -1.39
CUX1-207ENST00000465461 VPS25Q9BRG1 176 aa6.35□□□□□ -1.39
CUX1-207ENST00000465461 MUC17Q685J3 4493 aa6.34□□□□□ -1.39
CUX1-207ENST00000465461 TRBV7-4A0A0J9YYF1 115 aa6.34□□□□□ -1.39
CUX1-207ENST00000465461 A0A1W2PPM0 123 aa6.34□□□□□ -1.39
CUX1-207ENST00000465461 MTURNQ8N3F0 131 aa6.34□□□□□ -1.39
CUX1-207ENST00000465461 TRBV20-1A0A075B6N2 111 aa6.33□□□□□ -1.4
CUX1-207ENST00000465461 COL5A1-AS1Q5SY13 56 aa6.33□□□□□ -1.4
CUX1-207ENST00000465461 Q96NJ1 140 aa6.33□□□□□ -1.4
CUX1-207ENST00000465461 DSCR8Q96T75 97 aa6.33□□□□□ -1.4
CUX1-207ENST00000465461 KRTAP4-1Q9BYQ7 146 aa6.33□□□□□ -1.4
CUX1-207ENST00000465461 SS18L2Q9UHA2 77 aa6.33□□□□□ -1.4
CUX1-207ENST00000465461 SEC61BP60468 96 aaKnown RBP6.31□□□□□ -1.4
CUX1-207ENST00000465461 DEFB116Q30KQ4 102 aa6.31□□□□□ -1.4
CUX1-207ENST00000465461 PCOTHQ58A44 107 aa6.3□□□□□ -1.4
CUX1-207ENST00000465461 OBSCN-AS1Q96MR7 158 aa6.29□□□□□ -1.4
CUX1-207ENST00000465461 MUC2Q02817 5179 aa6.28□□□□□ -1.4
CUX1-207ENST00000465461 JMJD7-PLA2G4BH0Y9G9 81 aa6.28□□□□□ -1.4
CUX1-207ENST00000465461 C14orf132Q9NPU4 83 aa6.28□□□□□ -1.4
CUX1-207ENST00000465461 SPCS1Q9Y6A9 102 aa6.28□□□□□ -1.4
CUX1-207ENST00000465461 IGKV4-1P06312 121 aa6.27□□□□□ -1.41
CUX1-207ENST00000465461 Q6ZQT0 140 aa6.27□□□□□ -1.41
CUX1-207ENST00000465461 SIGMAR1Q99720 223 aa6.27□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms