RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 A0A1W2PNM2 257 aa7.47□□□□□ -1.21
NPHP4-204ENST00000460696 KRTAP26-1Q6PEX3 210 aa7.47□□□□□ -1.21
NPHP4-204ENST00000460696 K7EQZ3 153 aa7.47□□□□□ -1.21
NPHP4-204ENST00000460696 CIRBP-AS1Q8TBR5 109 aa7.46□□□□□ -1.22
NPHP4-204ENST00000460696 IGHV6-1A0A0B4J1U7 121 aa7.46□□□□□ -1.22
NPHP4-204ENST00000460696 C4orf48Q5BLP8 95 aa7.45□□□□□ -1.22
NPHP4-204ENST00000460696 PLA2G2DQ9UNK4 145 aa7.45□□□□□ -1.22
NPHP4-204ENST00000460696 IGFL1Q6UW32 110 aa7.45□□□□□ -1.22
NPHP4-204ENST00000460696 A0A1B0GW54 56 aa7.44□□□□□ -1.22
NPHP4-204ENST00000460696 RPS28P62857 69 aaKnown RBP7.44□□□□□ -1.22
NPHP4-204ENST00000460696 SMR3BP02814 79 aaPredicted RBP7.44□□□□□ -1.22
NPHP4-204ENST00000460696 KRTAP21-3Q3LHN1 58 aa7.43□□□□□ -1.22
NPHP4-204ENST00000460696 C4orf26Q17RF5 130 aa7.43□□□□□ -1.22
NPHP4-204ENST00000460696 CYSTM1Q9H1C7 97 aa7.43□□□□□ -1.22
NPHP4-204ENST00000460696 H0Y9P7 68 aa7.42□□□□□ -1.22
NPHP4-204ENST00000460696 MOBPQ13875 183 aa7.42□□□□□ -1.22
NPHP4-204ENST00000460696 IGLV5-48A0A075B6I7 105 aa7.41□□□□□ -1.22
NPHP4-204ENST00000460696 A0A0U1RQV1 116 aa7.41□□□□□ -1.22
NPHP4-204ENST00000460696 PCOTHQ58A44 107 aa7.41□□□□□ -1.22
NPHP4-204ENST00000460696 TRRAPQ9Y4A5 3859 aa7.41□□□□□ -1.22
NPHP4-204ENST00000460696 C9orf163Q8N9P6 203 aa7.41□□□□□ -1.22
NPHP4-204ENST00000460696 APLNQ9ULZ1 77 aa7.41□□□□□ -1.22
NPHP4-204ENST00000460696 H7BZZ5 65 aa7.4□□□□□ -1.22
NPHP4-204ENST00000460696 RTL8CO15255 209 aa7.4□□□□□ -1.23
NPHP4-204ENST00000460696 KLKP1Q107X0 134 aa7.4□□□□□ -1.23
NPHP4-204ENST00000460696 IGLV5-37A0A075B6J1 123 aa7.37□□□□□ -1.23
NPHP4-204ENST00000460696 KRTAP1-5Q9BYS1 174 aa7.37□□□□□ -1.23
NPHP4-204ENST00000460696 CHKB-CPT1BH3BT56 60 aa7.37□□□□□ -1.23
NPHP4-204ENST00000460696 CNBPP62633 177 aaKnown RBP7.37□□□□□ -1.23
NPHP4-204ENST00000460696 C1orf64Q8NEQ6 169 aa7.36□□□□□ -1.23
NPHP4-204ENST00000460696 FBN3Q75N90 2809 aa7.35□□□□□ -1.23
NPHP4-204ENST00000460696 PSPHP1O15172 72 aa7.35□□□□□ -1.23
NPHP4-204ENST00000460696 TNP2Q05952 138 aa7.35□□□□□ -1.23
NPHP4-204ENST00000460696 ANAPC11Q9NYG5 84 aa7.35□□□□□ -1.23
NPHP4-204ENST00000460696 hDV103S1A0JD37 113 aa7.34□□□□□ -1.23
NPHP4-204ENST00000460696 A0A087WTM6 91 aa7.33□□□□□ -1.24
NPHP4-204ENST00000460696 SPRR1AP35321 89 aa7.33□□□□□ -1.24
NPHP4-204ENST00000460696 RETNLBQ9BQ08 111 aa7.33□□□□□ -1.24
NPHP4-204ENST00000460696 ZNF469Q96JG9 3925 aaPredicted RBP7.32□□□□□ -1.24
NPHP4-204ENST00000460696 A8MWP4 228 aa7.3□□□□□ -1.24
NPHP4-204ENST00000460696 SPTSSBQ8NFR3 76 aa7.3□□□□□ -1.24
NPHP4-204ENST00000460696 DSCR10P59022 87 aa7.3□□□□□ -1.24
NPHP4-204ENST00000460696 OCR1Q9BZK8 76 aa7.29□□□□□ -1.24
NPHP4-204ENST00000460696 PRR15Q8IV56 129 aa7.29□□□□□ -1.24
NPHP4-204ENST00000460696 SPRR4Q96PI1 79 aa7.28□□□□□ -1.24
NPHP4-204ENST00000460696 TRAV22A0A0B4J277 110 aa7.27□□□□□ -1.24
NPHP4-204ENST00000460696 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.27□□□□□ -1.24
NPHP4-204ENST00000460696 PSORS1C2Q9UIG4 136 aa7.27□□□□□ -1.25
NPHP4-204ENST00000460696 V9GYY9 64 aa7.27□□□□□ -1.25
NPHP4-204ENST00000460696 LCE6AA0A183 80 aa7.24□□□□□ -1.25
NPHP4-204ENST00000460696 A6NED7 52 aa7.24□□□□□ -1.25
NPHP4-204ENST00000460696 FAM229AH3BQW9 127 aa7.24□□□□□ -1.25
NPHP4-204ENST00000460696 PRR15LQ9BU68 103 aa7.24□□□□□ -1.25
NPHP4-204ENST00000460696 ZNF861PO60384 105 aa7.24□□□□□ -1.25
NPHP4-204ENST00000460696 KRTAP4-16G5E9R7 235 aaPredicted RBP7.24□□□□□ -1.25
NPHP4-204ENST00000460696 SPACA4Q8TDM5 124 aa7.22□□□□□ -1.25
NPHP4-204ENST00000460696 TP53AIP1Q9HCN2 124 aa7.21□□□□□ -1.26
NPHP4-204ENST00000460696 KRTAP7-1Q8IUC3 87 aa7.21□□□□□ -1.26
NPHP4-204ENST00000460696 J3QL48 77 aa7.2□□□□□ -1.26
NPHP4-204ENST00000460696 COL7A1Q02388 2944 aa7.19□□□□□ -1.26
NPHP4-204ENST00000460696 C8orf17Q9NRJ1 99 aa7.19□□□□□ -1.26
NPHP4-204ENST00000460696 PANO1I0J062 215 aa7.18□□□□□ -1.26
NPHP4-204ENST00000460696 H3BPC8 53 aa7.18□□□□□ -1.26
NPHP4-204ENST00000460696 OXTP01178 125 aa7.17□□□□□ -1.26
NPHP4-204ENST00000460696 MRPL34Q9BQ48 92 aaKnown RBP7.17□□□□□ -1.26
NPHP4-204ENST00000460696 PRO0628Q9UI54 55 aa7.17□□□□□ -1.26
NPHP4-204ENST00000460696 LINC00336Q6ZUF6 198 aa7.16□□□□□ -1.26
NPHP4-204ENST00000460696 ANK3Q12955 4377 aaKnown RBP7.16□□□□□ -1.26
NPHP4-204ENST00000460696 IGKV2D-30A0A075B6S6 120 aa7.15□□□□□ -1.26
NPHP4-204ENST00000460696 A0A1B0GVX0 72 aa7.15□□□□□ -1.26
NPHP4-204ENST00000460696 IGKV2-30P06310 120 aa7.15□□□□□ -1.26
NPHP4-204ENST00000460696 IGLV7-43P04211 117 aa7.15□□□□□ -1.27
NPHP4-204ENST00000460696 C1orf195Q5TG92 126 aa7.14□□□□□ -1.27
NPHP4-204ENST00000460696 SPAG11AQ6PDA7 123 aa7.14□□□□□ -1.27
NPHP4-204ENST00000460696 KRTAP11-1Q8IUC1 163 aa7.14□□□□□ -1.27
NPHP4-204ENST00000460696 LINC00313P59037 77 aa7.13□□□□□ -1.27
NPHP4-204ENST00000460696 A8MUN3 132 aa7.12□□□□□ -1.27
NPHP4-204ENST00000460696 LIMD2Q9BT23 127 aa7.11□□□□□ -1.27
NPHP4-204ENST00000460696 IGLV8-61A0A075B6I0 122 aa7.1□□□□□ -1.27
NPHP4-204ENST00000460696 PLA2G1BP04054 148 aaKnown RBP7.1□□□□□ -1.27
NPHP4-204ENST00000460696 PMAIP1Q13794 54 aa7.1□□□□□ -1.27
NPHP4-204ENST00000460696 TYMSOSQ8TAI1 123 aa7.1□□□□□ -1.27
NPHP4-204ENST00000460696 SPRR1BP22528 89 aa7.1□□□□□ -1.27
NPHP4-204ENST00000460696 SPINK1P00995 79 aa7.1□□□□□ -1.27
NPHP4-204ENST00000460696 KRTAP10-2P60368 255 aa7.09□□□□□ -1.27
NPHP4-204ENST00000460696 FAM229BQ4G0N7 80 aa7.09□□□□□ -1.27
NPHP4-204ENST00000460696 SSBP3-AS1Q7Z2R9 100 aa7.09□□□□□ -1.27
NPHP4-204ENST00000460696 COA5Q86WW8 74 aa7.09□□□□□ -1.27
NPHP4-204ENST00000460696 LINC00472Q9H8W2 130 aa7.09□□□□□ -1.27
NPHP4-204ENST00000460696 Q5XG85 94 aa7.09□□□□□ -1.28
NPHP4-204ENST00000460696 DNHD1Q96M86 4753 aa7.08□□□□□ -1.28
NPHP4-204ENST00000460696 SEC61GP60059 68 aa7.07□□□□□ -1.28
NPHP4-204ENST00000460696 FP248Q71RG6 208 aaPredicted RBP7.07□□□□□ -1.28
NPHP4-204ENST00000460696 MEGF8Q7Z7M0 2845 aa7.07□□□□□ -1.28
NPHP4-204ENST00000460696 MMP24-AS1A0A0U1RRL7 71 aa7.06□□□□□ -1.28
NPHP4-204ENST00000460696 PLAC8Q9NZF1 115 aa7.05□□□□□ -1.28
NPHP4-204ENST00000460696 LOC101927531A0A1B0GV80 90 aa7.04□□□□□ -1.28
NPHP4-204ENST00000460696 ACYP2P14621 99 aa7.03□□□□□ -1.28
NPHP4-204ENST00000460696 C8orf87E5RJ46 101 aa7.02□□□□□ -1.29
NPHP4-204ENST00000460696 Q96NJ1 140 aa7.02□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 62.1 ms