RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 HMCN2Q8NDA2 5059 aa7.26□□□□□ -1.25
USP40-205ENST00000430158 CTAG1AP78358 180 aa7.26□□□□□ -1.25
USP40-205ENST00000430158 K7ERJ3 54 aa7.25□□□□□ -1.25
USP40-205ENST00000430158 NHP2Q9NX24 153 aaKnown RBP7.25□□□□□ -1.25
USP40-205ENST00000430158 IGLV5-48A0A075B6I7 105 aa7.24□□□□□ -1.25
USP40-205ENST00000430158 H7C2G1 150 aa7.24□□□□□ -1.25
USP40-205ENST00000430158 VAMP3Q15836 100 aa7.24□□□□□ -1.25
USP40-205ENST00000430158 TYMSOSQ8TAI1 123 aa7.24□□□□□ -1.25
USP40-205ENST00000430158 SMIM29Q86T20 159 aa7.22□□□□□ -1.25
USP40-205ENST00000430158 FAM218AQ96MZ4 157 aa7.22□□□□□ -1.25
USP40-205ENST00000430158 TSTD3H0UI37 97 aa7.21□□□□□ -1.26
USP40-205ENST00000430158 TRIAP1O43715 76 aa7.21□□□□□ -1.26
USP40-205ENST00000430158 Q8N377 158 aa7.21□□□□□ -1.26
USP40-205ENST00000430158 hADV29S1A0JD25 119 aa7.2□□□□□ -1.26
USP40-205ENST00000430158 H0YGX0 51 aa7.2□□□□□ -1.26
USP40-205ENST00000430158 TSPAN13O95857 204 aa7.2□□□□□ -1.26
USP40-205ENST00000430158 TEX49A0A1B0GTD5 131 aa7.19□□□□□ -1.26
USP40-205ENST00000430158 M0R143 59 aa7.18□□□□□ -1.26
USP40-205ENST00000430158 SLC25A20O43772 301 aa7.18□□□□□ -1.26
USP40-205ENST00000430158 SSBP3-AS1Q7Z2R9 100 aa7.18□□□□□ -1.26
USP40-205ENST00000430158 MOBPQ13875 183 aa7.17□□□□□ -1.26
USP40-205ENST00000430158 Q1RN00 199 aa7.17□□□□□ -1.26
USP40-205ENST00000430158 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP7.17□□□□□ -1.26
USP40-205ENST00000430158 Q6ZQY7 126 aa7.17□□□□□ -1.26
USP40-205ENST00000430158 LINC00304Q8N9R0 145 aa7.17□□□□□ -1.26
USP40-205ENST00000430158 Q8NBF4 154 aa7.17□□□□□ -1.26
USP40-205ENST00000430158 DEFB105AQ8NG35 78 aa7.17□□□□□ -1.26
USP40-205ENST00000430158 IGLV9-49A0A0B4J1Y8 123 aa7.16□□□□□ -1.26
USP40-205ENST00000430158 KRTAP9-8Q9BYQ0 159 aa7.15□□□□□ -1.26
USP40-205ENST00000430158 A0A1B0GX51 115 aa7.14□□□□□ -1.27
USP40-205ENST00000430158 CLEC2BQ92478 149 aa7.14□□□□□ -1.27
USP40-205ENST00000430158 LAMTOR3Q9UHA4 124 aa7.14□□□□□ -1.27
USP40-205ENST00000430158 SPAG11AQ6PDA7 123 aa7.12□□□□□ -1.27
USP40-205ENST00000430158 IGLV8-61A0A075B6I0 122 aa7.11□□□□□ -1.27
USP40-205ENST00000430158 PSMB2P49721 201 aa7.11□□□□□ -1.27
USP40-205ENST00000430158 C9orf153Q5TBE3 101 aa7.11□□□□□ -1.27
USP40-205ENST00000430158 PPDPFLQ8WWR9 84 aa7.11□□□□□ -1.27
USP40-205ENST00000430158 LRP2P98164 4655 aa7.11□□□□□ -1.27
USP40-205ENST00000430158 SPINK1P00995 79 aa7.09□□□□□ -1.27
USP40-205ENST00000430158 COX6CP09669 75 aa7.09□□□□□ -1.27
USP40-205ENST00000430158 OCIAD2Q56VL3 154 aa7.09□□□□□ -1.27
USP40-205ENST00000430158 A0A0G2JQZ4 141 aa7.08□□□□□ -1.28
USP40-205ENST00000430158 LST1O00453 97 aa7.08□□□□□ -1.28
USP40-205ENST00000430158 RPS29P62273 56 aaKnown RBP7.08□□□□□ -1.28
USP40-205ENST00000430158 NAA38Q9BRA0 125 aaKnown RBP7.08□□□□□ -1.28
USP40-205ENST00000430158 TRACP01848 142 aa7.07□□□□□ -1.28
USP40-205ENST00000430158 BATFQ16520 125 aa7.07□□□□□ -1.28
USP40-205ENST00000430158 SNHG12Q9BXW3 62 aa7.07□□□□□ -1.28
USP40-205ENST00000430158 TAX1BP3O14907 124 aa7.06□□□□□ -1.28
USP40-205ENST00000430158 SNCGO76070 127 aa7.06□□□□□ -1.28
USP40-205ENST00000430158 CD164Q04900 197 aa7.05□□□□□ -1.28
USP40-205ENST00000430158 TCL1BO95988 128 aa7.04□□□□□ -1.28
USP40-205ENST00000430158 SCGB1C2P0DMR2 95 aa7.04□□□□□ -1.28
USP40-205ENST00000430158 LPAP08519 4548 aa7.04□□□□□ -1.28
USP40-205ENST00000430158 C9orf118A6NHY6 69 aa7.03□□□□□ -1.28
USP40-205ENST00000430158 NDUFV3P56181 108 aaKnown RBP7.03□□□□□ -1.28
USP40-205ENST00000430158 IGFL1Q6UW32 110 aa7.03□□□□□ -1.28
USP40-205ENST00000430158 RETNLBQ9BQ08 111 aa7.03□□□□□ -1.28
USP40-205ENST00000430158 F8WEM9 126 aa7.02□□□□□ -1.29
USP40-205ENST00000430158 Q5XG85 94 aa7.02□□□□□ -1.29
USP40-205ENST00000430158 Q6JHZ5 121 aa7.02□□□□□ -1.29
USP40-205ENST00000430158 ORMDL1Q9P0S3 153 aa7.02□□□□□ -1.29
USP40-205ENST00000430158 H3BUT2 72 aa7.01□□□□□ -1.29
USP40-205ENST00000430158 HRCT1Q6UXD1 115 aa7.01□□□□□ -1.29
USP40-205ENST00000430158 H3BQ85 93 aa7□□□□□ -1.29
USP40-205ENST00000430158 DNAL4O96015 105 aa7□□□□□ -1.29
USP40-205ENST00000430158 FABP2P12104 132 aa7□□□□□ -1.29
USP40-205ENST00000430158 PRR4Q16378 134 aa7□□□□□ -1.29
USP40-205ENST00000430158 TMEM256-PLSCR3K7ERE1 68 aa6.99□□□□□ -1.29
USP40-205ENST00000430158 UBR4Q5T4S7 5183 aa6.98□□□□□ -1.29
USP40-205ENST00000430158 UBE2V1Q13404 147 aa6.98□□□□□ -1.29
USP40-205ENST00000430158 ATXN8Q156A1 80 aa6.98□□□□□ -1.29
USP40-205ENST00000430158 A0A1W2PPM0 123 aa6.97□□□□□ -1.29
USP40-205ENST00000430158 H3BMG7 143 aa6.97□□□□□ -1.29
USP40-205ENST00000430158 FP248Q71RG6 208 aaPredicted RBP6.97□□□□□ -1.29
USP40-205ENST00000430158 TRBV20-1A0A075B6N2 111 aa6.96□□□□□ -1.3
USP40-205ENST00000430158 PCP4L1A6NKN8 68 aa6.96□□□□□ -1.3
USP40-205ENST00000430158 BAALC-AS2P0C853 105 aa6.96□□□□□ -1.3
USP40-205ENST00000430158 COL5A1-AS1Q5SY13 56 aa6.96□□□□□ -1.3
USP40-205ENST00000430158 Q6Q795 121 aa6.96□□□□□ -1.3
USP40-205ENST00000430158 IGLV7-46A0A075B6I9 117 aa6.95□□□□□ -1.3
USP40-205ENST00000430158 TRBV7-7A0A0K0K1E9 115 aa6.95□□□□□ -1.3
USP40-205ENST00000430158 LYRM7Q5U5X0 104 aa6.95□□□□□ -1.3
USP40-205ENST00000430158 LIMD2Q9BT23 127 aa6.95□□□□□ -1.3
USP40-205ENST00000430158 A0A1W2PNM2 257 aa6.94□□□□□ -1.3
USP40-205ENST00000430158 H3BS24 57 aa6.94□□□□□ -1.3
USP40-205ENST00000430158 C1orf195Q5TG92 126 aa6.93□□□□□ -1.3
USP40-205ENST00000430158 TRBV7-4A0A0J9YYF1 115 aa6.92□□□□□ -1.3
USP40-205ENST00000430158 TPRXLQ17RH7 258 aa6.92□□□□□ -1.3
USP40-205ENST00000430158 KRTAP13-3Q3SY46 172 aa6.92□□□□□ -1.3
USP40-205ENST00000430158 ASB16-AS1Q495Z4 193 aa6.92□□□□□ -1.3
USP40-205ENST00000430158 ANKRD29Q8N6D5 301 aa6.92□□□□□ -1.3
USP40-205ENST00000430158 TEN1Q86WV5 123 aa6.91□□□□□ -1.3
USP40-205ENST00000430158 C9JAW5 83 aa6.9□□□□□ -1.3
USP40-205ENST00000430158 A0A1B0GV72 72 aa6.89□□□□□ -1.31
USP40-205ENST00000430158 OBSCN-AS1Q96MR7 158 aa6.89□□□□□ -1.31
USP40-205ENST00000430158 RBM3P98179 157 aaKnown RBP6.88□□□□□ -1.31
USP40-205ENST00000430158 SPCS1Q9Y6A9 102 aa6.87□□□□□ -1.31
USP40-205ENST00000430158 RNF213Q63HN8 5207 aa6.86□□□□□ -1.31
USP40-205ENST00000430158 A0A087WSZ3 146 aa6.85□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms