RNA–Protein interactions for RNA: ENST00000430086.1

CCDC88A-206, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-206ENST00000430086 KNL1Q8NG31 2342 aa0.97□□□□□ -2.25
CCDC88A-206ENST00000430086 ZFYVE26Q68DK2 2539 aa0.95□□□□□ -2.26
CCDC88A-206ENST00000430086 CLASP1Q7Z460 1538 aa0.95□□□□□ -2.26
CCDC88A-206ENST00000430086 REV3LO60673 3130 aa0.95□□□□□ -2.26
CCDC88A-206ENST00000430086 ANK2Q01484 3957 aa0.95□□□□□ -2.26
CCDC88A-206ENST00000430086 CSMD3Q7Z407 3707 aa0.95□□□□□ -2.26
CCDC88A-206ENST00000430086 CHD6Q8TD26 2715 aa0.94□□□□□ -2.26
CCDC88A-206ENST00000430086 ATRQ13535 2644 aa0.94□□□□□ -2.26
CCDC88A-206ENST00000430086 VWFP04275 2813 aa0.93□□□□□ -2.26
CCDC88A-206ENST00000430086 ABCA2Q9BZC7 2435 aa0.93□□□□□ -2.26
CCDC88A-206ENST00000430086 PDE4DIPQ5VU43 2346 aa0.93□□□□□ -2.26
CCDC88A-206ENST00000430086 ABCC8Q09428 1581 aa0.92□□□□□ -2.26
CCDC88A-206ENST00000430086 IGF2RP11717 2491 aa0.92□□□□□ -2.26
CCDC88A-206ENST00000430086 H0YGG7 62 aa0.92□□□□□ -2.26
CCDC88A-206ENST00000430086 M0R2T5 61 aa0.92□□□□□ -2.26
CCDC88A-206ENST00000430086 DEFB135Q30KP9 77 aa0.92□□□□□ -2.26
CCDC88A-206ENST00000430086 PTPN13Q12923 2485 aa0.92□□□□□ -2.26
CCDC88A-206ENST00000430086 UNC79Q9P2D8 2635 aa0.91□□□□□ -2.26
CCDC88A-206ENST00000430086 EFCAB6Q5THR3 1501 aa0.91□□□□□ -2.26
CCDC88A-206ENST00000430086 CSPG4Q6UVK1 2322 aa0.91□□□□□ -2.26
CCDC88A-206ENST00000430086 TRANK1O15050 2925 aa0.91□□□□□ -2.26
CCDC88A-206ENST00000430086 AGLP35573 1532 aa0.89□□□□□ -2.27
CCDC88A-206ENST00000430086 LINC00308Q8TCZ7 52 aa0.89□□□□□ -2.27
CCDC88A-206ENST00000430086 ABCA5Q8WWZ7 1642 aa0.89□□□□□ -2.27
CCDC88A-206ENST00000430086 RPS27P42677 84 aaKnown RBP0.88□□□□□ -2.27
CCDC88A-206ENST00000430086 RPS27LQ71UM5 84 aaKnown RBP0.88□□□□□ -2.27
CCDC88A-206ENST00000430086 ANKRD36CQ5JPF3 1778 aa0.88□□□□□ -2.27
CCDC88A-206ENST00000430086 H3BUA1 57 aa0.87□□□□□ -2.27
CCDC88A-206ENST00000430086 WT1-ASQ06250 92 aa0.87□□□□□ -2.27
CCDC88A-206ENST00000430086 CHD8Q9HCK8 2581 aa0.87□□□□□ -2.27
CCDC88A-206ENST00000430086 AHNAK2Q8IVF2 5795 aa0.86□□□□□ -2.27
CCDC88A-206ENST00000430086 CDC42BPAQ5VT25 1732 aa0.86□□□□□ -2.27
CCDC88A-206ENST00000430086 NCOR1O75376 2440 aa0.86□□□□□ -2.27
CCDC88A-206ENST00000430086 OTOGQ6ZRI0 2925 aa0.85□□□□□ -2.27
CCDC88A-206ENST00000430086 NRXN3Q9Y4C0 1643 aa0.84□□□□□ -2.28
CCDC88A-206ENST00000430086 DEFB106AQ8N104 65 aa0.83□□□□□ -2.28
CCDC88A-206ENST00000430086 ABRACLQ9P1F3 81 aa0.83□□□□□ -2.28
CCDC88A-206ENST00000430086 TOGARAM1Q9Y4F4 1720 aa0.82□□□□□ -2.28
CCDC88A-206ENST00000430086 PRLHP81277 87 aa0.82□□□□□ -2.28
CCDC88A-206ENST00000430086 EP300Q09472 2414 aaPredicted RBP0.81□□□□□ -2.28
CCDC88A-206ENST00000430086 NAV2Q8IVL1 2488 aa0.81□□□□□ -2.28
CCDC88A-206ENST00000430086 DSPP15924 2871 aaKnown RBP0.81□□□□□ -2.28
CCDC88A-206ENST00000430086 USP24Q9UPU5 2620 aa0.81□□□□□ -2.28
CCDC88A-206ENST00000430086 S4R3F8 94 aa0.81□□□□□ -2.28
CCDC88A-206ENST00000430086 SMIM27A0A1W2PRY6 76 aa0.8□□□□□ -2.28
CCDC88A-206ENST00000430086 TIMM8BQ9Y5J9 83 aaPredicted RBP0.8□□□□□ -2.28
CCDC88A-206ENST00000430086 TOMM5Q8N4H5 51 aa0.79□□□□□ -2.28
CCDC88A-206ENST00000430086 PRM1P04553 51 aa0.78□□□□□ -2.28
CCDC88A-206ENST00000430086 PKD1L1Q8TDX9 2849 aa0.77□□□□□ -2.29
CCDC88A-206ENST00000430086 LINC01546A6NGU7 62 aa0.77□□□□□ -2.29
CCDC88A-206ENST00000430086 HECTD1Q9ULT8 2610 aa0.77□□□□□ -2.29
CCDC88A-206ENST00000430086 NCOR2Q9Y618 2525 aa0.76□□□□□ -2.29
CCDC88A-206ENST00000430086 IQGAP2Q13576 1575 aa0.74□□□□□ -2.29
CCDC88A-206ENST00000430086 AKAP13Q12802 2813 aa0.74□□□□□ -2.29
CCDC88A-206ENST00000430086 LMO7Q8WWI1 1683 aa0.73□□□□□ -2.29
CCDC88A-206ENST00000430086 KRTAP21-1Q3LI58 79 aa0.73□□□□□ -2.29
CCDC88A-206ENST00000430086 NOP10Q9NPE3 64 aaKnown RBP0.73□□□□□ -2.29
CCDC88A-206ENST00000430086 ALMS1Q8TCU4 4167 aa0.73□□□□□ -2.29
CCDC88A-206ENST00000430086 HIVEP3Q5T1R4 2406 aa0.73□□□□□ -2.29
CCDC88A-206ENST00000430086 CREBBPQ92793 2442 aa0.73□□□□□ -2.29
CCDC88A-206ENST00000430086 UBR5O95071 2799 aaPredicted RBP0.72□□□□□ -2.29
CCDC88A-206ENST00000430086 TNXBP22105 4242 aa0.72□□□□□ -2.29
CCDC88A-206ENST00000430086 A0A1B0GUL6 1792 aa0.72□□□□□ -2.29
CCDC88A-206ENST00000430086 IGSF10Q6WRI0 2623 aa0.7□□□□□ -2.3
CCDC88A-206ENST00000430086 PCNX1Q96RV3 2341 aa0.7□□□□□ -2.3
CCDC88A-206ENST00000430086 SETXQ7Z333 2677 aaKnown RBP0.7□□□□□ -2.3
CCDC88A-206ENST00000430086 PRRC2CQ9Y520 2896 aaKnown RBP0.69□□□□□ -2.3
CCDC88A-206ENST00000430086 SPRR2DP22532 72 aa0.69□□□□□ -2.3
CCDC88A-206ENST00000430086 SMIM2Q9BVW6 85 aa0.69□□□□□ -2.3
CCDC88A-206ENST00000430086 WNK1Q9H4A3 2382 aa0.69□□□□□ -2.3
CCDC88A-206ENST00000430086 MAP1BP46821 2468 aaKnown RBP0.69□□□□□ -2.3
CCDC88A-206ENST00000430086 APC2O95996 2303 aa0.68□□□□□ -2.3
CCDC88A-206ENST00000430086 WFDC10BQ8IUB3 73 aa0.68□□□□□ -2.3
CCDC88A-206ENST00000430086 KAAG1Q9UBP8 84 aa0.68□□□□□ -2.3
CCDC88A-206ENST00000430086 BSNQ9UPA5 3926 aa0.68□□□□□ -2.3
CCDC88A-206ENST00000430086 KIF21BO75037 1637 aa0.67□□□□□ -2.3
CCDC88A-206ENST00000430086 HUWE1Q7Z6Z7 4374 aaKnown RBP0.66□□□□□ -2.3
CCDC88A-206ENST00000430086 C9orf92A6NGG3 77 aa0.66□□□□□ -2.3
CCDC88A-206ENST00000430086 TFF3Q07654 80 aa0.66□□□□□ -2.3
CCDC88A-206ENST00000430086 CEP290O15078 2479 aa0.66□□□□□ -2.3
CCDC88A-206ENST00000430086 FAT2Q9NYQ8 4349 aa0.65□□□□□ -2.3
CCDC88A-206ENST00000430086 DDX60Q8IY21 1712 aaKnown RBP0.65□□□□□ -2.31
CCDC88A-206ENST00000430086 PKD1L2Q7Z442 2459 aa0.65□□□□□ -2.31
CCDC88A-206ENST00000430086 IQGAP1P46940 1657 aa0.65□□□□□ -2.31
CCDC88A-206ENST00000430086 FAM208AQ9UK61 1670 aaKnown RBP0.65□□□□□ -2.31
CCDC88A-206ENST00000430086 ACANP16112 2415 aa0.65□□□□□ -2.31
CCDC88A-206ENST00000430086 SYNE1Q8NF91 8797 aaKnown RBP0.64□□□□□ -2.31
CCDC88A-206ENST00000430086 IGLV5-48A0A075B6I7 105 aa0.64□□□□□ -2.31
CCDC88A-206ENST00000430086 PRKDCP78527 4128 aaKnown RBP0.64□□□□□ -2.31
CCDC88A-206ENST00000430086 CACNA1AO00555 2505 aa0.64□□□□□ -2.31
CCDC88A-206ENST00000430086 LRP1Q07954 4544 aaKnown RBP0.63□□□□□ -2.31
CCDC88A-206ENST00000430086 NBASA2RRP1 2371 aa0.63□□□□□ -2.31
CCDC88A-206ENST00000430086 TNRC18O15417 2968 aaPredicted RBP0.62□□□□□ -2.31
CCDC88A-206ENST00000430086 H3BNG1 76 aa0.61□□□□□ -2.31
CCDC88A-206ENST00000430086 CELSR1Q9NYQ6 3014 aa0.6□□□□□ -2.31
CCDC88A-206ENST00000430086 SPRR2BP35325 72 aa0.6□□□□□ -2.31
CCDC88A-206ENST00000430086 AHNAKQ09666 5890 aaKnown RBP0.59□□□□□ -2.31
CCDC88A-206ENST00000430086 DEFB131AP59861 70 aa0.59□□□□□ -2.31
CCDC88A-206ENST00000430086 HRNRQ86YZ3 2850 aaPredicted RBP0.59□□□□□ -2.32
CCDC88A-206ENST00000430086 MUC5BQ9HC84 5762 aaPredicted RBP0.59□□□□□ -2.32
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms