RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 PRAC1Q96KF2 57 aa9.32□□□□□ -0.92
PTPRF-206ENST00000429895 KRTAP1-5Q9BYS1 174 aa9.3□□□□□ -0.92
PTPRF-206ENST00000429895 LINC01558Q9Y6Z2 57 aa9.3□□□□□ -0.92
PTPRF-206ENST00000429895 KRTAP10-1P60331 282 aa9.29□□□□□ -0.92
PTPRF-206ENST00000429895 SPRR1AP35321 89 aa9.29□□□□□ -0.92
PTPRF-206ENST00000429895 KRTAP10-2P60368 255 aa9.27□□□□□ -0.92
PTPRF-206ENST00000429895 LINC00472Q9H8W2 130 aa9.26□□□□□ -0.93
PTPRF-206ENST00000429895 LAMA3Q16787 3333 aa9.25□□□□□ -0.93
PTPRF-206ENST00000429895 TRANK1O15050 2925 aa9.24□□□□□ -0.93
PTPRF-206ENST00000429895 RANBP2P49792 3224 aaKnown RBP9.24□□□□□ -0.93
PTPRF-206ENST00000429895 M0QZ58 72 aa9.23□□□□□ -0.93
PTPRF-206ENST00000429895 LCE6AA0A183 80 aa9.23□□□□□ -0.93
PTPRF-206ENST00000429895 H3BS24 57 aa9.22□□□□□ -0.93
PTPRF-206ENST00000429895 SPRR1BP22528 89 aa9.19□□□□□ -0.94
PTPRF-206ENST00000429895 UNC80Q8N2C7 3258 aa9.18□□□□□ -0.94
PTPRF-206ENST00000429895 CYSTM1Q9H1C7 97 aa9.18□□□□□ -0.94
PTPRF-206ENST00000429895 LAMA2P24043 3122 aaKnown RBP9.17□□□□□ -0.94
PTPRF-206ENST00000429895 FLNAP21333 2647 aaKnown RBP9.17□□□□□ -0.94
PTPRF-206ENST00000429895 KRTAP26-1Q6PEX3 210 aa9.17□□□□□ -0.94
PTPRF-206ENST00000429895 CDH23Q9H251 3354 aa9.16□□□□□ -0.94
PTPRF-206ENST00000429895 Q5VV11 94 aa9.16□□□□□ -0.94
PTPRF-206ENST00000429895 ATRQ13535 2644 aa9.15□□□□□ -0.94
PTPRF-206ENST00000429895 PLAC4Q8WY50 150 aa9.14□□□□□ -0.95
PTPRF-206ENST00000429895 PRRC2CQ9Y520 2896 aaKnown RBP9.14□□□□□ -0.95
PTPRF-206ENST00000429895 RPL37P61927 97 aaKnown RBP9.13□□□□□ -0.95
PTPRF-206ENST00000429895 ADM2Q7Z4H4 148 aa9.13□□□□□ -0.95
PTPRF-206ENST00000429895 ITPR3Q14573 2671 aa9.13□□□□□ -0.95
PTPRF-206ENST00000429895 A0A0A0MQY5 61 aa9.13□□□□□ -0.95
PTPRF-206ENST00000429895 Q5XG85 94 aa9.12□□□□□ -0.95
PTPRF-206ENST00000429895 DNAH14Q0VDD8 3507 aa9.11□□□□□ -0.95
PTPRF-206ENST00000429895 FP248Q71RG6 208 aaPredicted RBP9.11□□□□□ -0.95
PTPRF-206ENST00000429895 ROMO1P60602 79 aa9.11□□□□□ -0.95
PTPRF-206ENST00000429895 H1FX-AS1Q4G0G2 97 aa9.1□□□□□ -0.95
PTPRF-206ENST00000429895 PANO1I0J062 215 aa9.09□□□□□ -0.96
PTPRF-206ENST00000429895 SPATA8Q6RVD6 105 aa9.08□□□□□ -0.96
PTPRF-206ENST00000429895 MAST4O15021 2626 aa9.08□□□□□ -0.96
PTPRF-206ENST00000429895 Q6ZR54 194 aa9.06□□□□□ -0.96
PTPRF-206ENST00000429895 OXTP01178 125 aa9.03□□□□□ -0.96
PTPRF-206ENST00000429895 HELZ2Q9BYK8 2649 aaKnown RBP9.02□□□□□ -0.97
PTPRF-206ENST00000429895 A0A087X002 238 aa9.01□□□□□ -0.97
PTPRF-206ENST00000429895 PRUNE2Q8WUY3 3088 aa8.97□□□□□ -0.97
PTPRF-206ENST00000429895 SZT2Q5T011 3432 aa8.94□□□□□ -0.98
PTPRF-206ENST00000429895 XIRP2A4UGR9 3374 aa8.92□□□□□ -0.98
PTPRF-206ENST00000429895 FLG2Q5D862 2391 aaPredicted RBP8.92□□□□□ -0.98
PTPRF-206ENST00000429895 CFAP46Q8IYW2 2715 aa8.91□□□□□ -0.98
PTPRF-206ENST00000429895 NOTCH2NLQ7Z3S9 236 aa8.89□□□□□ -0.99
PTPRF-206ENST00000429895 CFAP54Q96N23 3096 aa8.88□□□□□ -0.99
PTPRF-206ENST00000429895 STAB1Q9NY15 2570 aa8.88□□□□□ -0.99
PTPRF-206ENST00000429895 KRTAP4-16G5E9R7 235 aaPredicted RBP8.87□□□□□ -0.99
PTPRF-206ENST00000429895 VCANP13611 3396 aa8.85□□□□□ -0.99
PTPRF-206ENST00000429895 TRIOO75962 3097 aa8.84□□□□□ -0.99
PTPRF-206ENST00000429895 KRTAP29-1A8MX34 341 aaPredicted RBP8.82□□□□□ -1
PTPRF-206ENST00000429895 KRTAP11-1Q8IUC1 163 aa8.81□□□□□ -1
PTPRF-206ENST00000429895 LAMA1P25391 3075 aa8.8□□□□□ -1
PTPRF-206ENST00000429895 SPTBN5Q9NRC6 3674 aaKnown RBP8.8□□□□□ -1
PTPRF-206ENST00000429895 A8MUU9 505 aa8.79□□□□□ -1
PTPRF-206ENST00000429895 A8MU10 97 aa8.78□□□□□ -1
PTPRF-206ENST00000429895 NBEAL1Q6ZS30 2694 aa8.76□□□□□ -1.01
PTPRF-206ENST00000429895 TEX15Q9BXT5 2789 aa8.75□□□□□ -1.01
PTPRF-206ENST00000429895 C20orf166-AS1Q96NR2 134 aa8.75□□□□□ -1.01
PTPRF-206ENST00000429895 CELSR3Q9NYQ7 3312 aa8.75□□□□□ -1.01
PTPRF-206ENST00000429895 AKAP13Q12802 2813 aa8.75□□□□□ -1.01
PTPRF-206ENST00000429895 CHD6Q8TD26 2715 aa8.74□□□□□ -1.01
PTPRF-206ENST00000429895 VPS13AQ96RL7 3174 aa8.69□□□□□ -1.02
PTPRF-206ENST00000429895 MGAQ8IWI9 3026 aa8.69□□□□□ -1.02
PTPRF-206ENST00000429895 DMBT1Q9UGM3 2413 aaPredicted RBP8.68□□□□□ -1.02
PTPRF-206ENST00000429895 SPEGQ15772 3267 aa8.68□□□□□ -1.02
PTPRF-206ENST00000429895 Q6ZRN7 208 aaPredicted RBP8.68□□□□□ -1.02
PTPRF-206ENST00000429895 WDFY4Q6ZS81 3184 aa8.68□□□□□ -1.02
PTPRF-206ENST00000429895 TEP1Q99973 2627 aaKnown RBP8.68□□□□□ -1.02
PTPRF-206ENST00000429895 KRTAP13-2Q52LG2 175 aa8.66□□□□□ -1.02
PTPRF-206ENST00000429895 RPS29P62273 56 aaKnown RBP8.65□□□□□ -1.02
PTPRF-206ENST00000429895 CENPEQ02224 2701 aa8.65□□□□□ -1.02
PTPRF-206ENST00000429895 ASB16-AS1Q495Z4 193 aa8.64□□□□□ -1.03
PTPRF-206ENST00000429895 REV3LO60673 3130 aa8.62□□□□□ -1.03
PTPRF-206ENST00000429895 KRTAP7-1Q8IUC3 87 aa8.62□□□□□ -1.03
PTPRF-206ENST00000429895 SETXQ7Z333 2677 aaKnown RBP8.6□□□□□ -1.03
PTPRF-206ENST00000429895 KRTAP25-1Q3LHN0 102 aa8.59□□□□□ -1.04
PTPRF-206ENST00000429895 MYO15AQ9UKN7 3530 aa8.58□□□□□ -1.04
PTPRF-206ENST00000429895 KRTAP16-1A8MUX0 517 aa8.58□□□□□ -1.04
PTPRF-206ENST00000429895 UNC79Q9P2D8 2635 aa8.56□□□□□ -1.04
PTPRF-206ENST00000429895 EYSQ5T1H1 3165 aa8.55□□□□□ -1.04
PTPRF-206ENST00000429895 USP34Q70CQ2 3546 aa8.54□□□□□ -1.04
PTPRF-206ENST00000429895 GCN1Q92616 2671 aaKnown RBP8.53□□□□□ -1.04
PTPRF-206ENST00000429895 ZNF292O60281 2723 aa8.53□□□□□ -1.04
PTPRF-206ENST00000429895 COL6A5A8TX70 2615 aa8.52□□□□□ -1.05
PTPRF-206ENST00000429895 FRYLO94915 3013 aa8.5□□□□□ -1.05
PTPRF-206ENST00000429895 TNP1P09430 55 aa8.5□□□□□ -1.05
PTPRF-206ENST00000429895 DSPP15924 2871 aaKnown RBP8.5□□□□□ -1.05
PTPRF-206ENST00000429895 COL6A3P12111 3177 aa8.5□□□□□ -1.05
PTPRF-206ENST00000429895 STAB2Q8WWQ8 2551 aa8.49□□□□□ -1.05
PTPRF-206ENST00000429895 FREM2Q5SZK8 3169 aa8.48□□□□□ -1.05
PTPRF-206ENST00000429895 KRTAP13-1Q8IUC0 172 aa8.48□□□□□ -1.05
PTPRF-206ENST00000429895 C10orf95Q9H7T3 257 aa8.48□□□□□ -1.05
PTPRF-206ENST00000429895 A6NN06 94 aa8.45□□□□□ -1.06
PTPRF-206ENST00000429895 FRYQ5TBA9 3013 aa8.45□□□□□ -1.06
PTPRF-206ENST00000429895 NBEAQ8NFP9 2946 aa8.45□□□□□ -1.06
PTPRF-206ENST00000429895 A0A1B0GVY2 172 aa8.44□□□□□ -1.06
PTPRF-206ENST00000429895 NOTCH1P46531 2555 aa8.44□□□□□ -1.06
PTPRF-206ENST00000429895 NDUFAF8A1L188 74 aa8.42□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 178.9 ms