RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 KRTAP11-1Q8IUC1 163 aa3.91□□□□□ -1.78
USP40-202ENST00000409945 MUSTN1Q8IVN3 82 aa3.91□□□□□ -1.78
USP40-202ENST00000409945 PLAC8Q9NZF1 115 aa3.91□□□□□ -1.78
USP40-202ENST00000409945 TOMM7Q9P0U1 55 aa3.91□□□□□ -1.78
USP40-202ENST00000409945 A0A096LNI7 61 aa3.91□□□□□ -1.78
USP40-202ENST00000409945 CXCL5P42830 114 aa3.91□□□□□ -1.78
USP40-202ENST00000409945 FAT1Q14517 4588 aa3.9□□□□□ -1.78
USP40-202ENST00000409945 LOC107984156A0A0G2JMH3 177 aa3.9□□□□□ -1.78
USP40-202ENST00000409945 H3BMG7 143 aa3.9□□□□□ -1.78
USP40-202ENST00000409945 SFTA2Q6UW10 78 aa3.9□□□□□ -1.78
USP40-202ENST00000409945 ARL17AQ8IVW1 177 aa3.9□□□□□ -1.78
USP40-202ENST00000409945 ANKRD29Q8N6D5 301 aa3.9□□□□□ -1.78
USP40-202ENST00000409945 RBM12B-AS1Q9P1G2 102 aa3.9□□□□□ -1.78
USP40-202ENST00000409945 J3QR89 54 aa3.89□□□□□ -1.79
USP40-202ENST00000409945 NDUFS5O43920 106 aa3.89□□□□□ -1.79
USP40-202ENST00000409945 Q8IZM0 81 aa3.89□□□□□ -1.79
USP40-202ENST00000409945 NKAPP1Q8N9T2 125 aa3.89□□□□□ -1.79
USP40-202ENST00000409945 TLX1NBP0CAT3 122 aa3.89□□□□□ -1.79
USP40-202ENST00000409945 SCGB1C2P0DMR2 95 aa3.89□□□□□ -1.79
USP40-202ENST00000409945 PRR3P79522 188 aaKnown RBP3.89□□□□□ -1.79
USP40-202ENST00000409945 ZNF625Q96I27 306 aaPredicted RBP3.89□□□□□ -1.79
USP40-202ENST00000409945 DMBT1Q9UGM3 2413 aaPredicted RBP3.89□□□□□ -1.79
USP40-202ENST00000409945 NDUFC2-KCTD14E9PQ53 114 aa3.88□□□□□ -1.79
USP40-202ENST00000409945 H0Y9J4 135 aa3.88□□□□□ -1.79
USP40-202ENST00000409945 COX6CP09669 75 aa3.88□□□□□ -1.79
USP40-202ENST00000409945 PSMB2P49721 201 aa3.88□□□□□ -1.79
USP40-202ENST00000409945 UNQ6190/PRO20217Q6UXQ8 127 aa3.88□□□□□ -1.79
USP40-202ENST00000409945 PRO0461Q9UI25 63 aa3.88□□□□□ -1.79
USP40-202ENST00000409945 KRTAP4-16G5E9R7 235 aaPredicted RBP3.87□□□□□ -1.79
USP40-202ENST00000409945 C9orf116Q5BN46 136 aaPredicted RBP3.87□□□□□ -1.79
USP40-202ENST00000409945 MEIG1Q5JSS6 88 aa3.87□□□□□ -1.79
USP40-202ENST00000409945 COX7B2Q8TF08 81 aa3.87□□□□□ -1.79
USP40-202ENST00000409945 TCL1BO95988 128 aa3.87□□□□□ -1.79
USP40-202ENST00000409945 LINC00337Q8N6G1 96 aa3.87□□□□□ -1.79
USP40-202ENST00000409945 LINC00308Q8TCZ7 52 aa3.87□□□□□ -1.79
USP40-202ENST00000409945 ANAPC13Q9BS18 74 aa3.87□□□□□ -1.79
USP40-202ENST00000409945 C6orf48Q9UBA6 75 aa3.87□□□□□ -1.79
USP40-202ENST00000409945 FLG2Q5D862 2391 aaPredicted RBP3.86□□□□□ -1.79
USP40-202ENST00000409945 SMIM26A0A096LP01 95 aa3.86□□□□□ -1.79
USP40-202ENST00000409945 UBE2BP63146 152 aa3.86□□□□□ -1.79
USP40-202ENST00000409945 KIAA0087Q14695 138 aa3.86□□□□□ -1.79
USP40-202ENST00000409945 ATXN8Q156A1 80 aa3.86□□□□□ -1.79
USP40-202ENST00000409945 ETDBQ3ZM63 59 aa3.86□□□□□ -1.79
USP40-202ENST00000409945 C2orf82Q6UX34 121 aa3.86□□□□□ -1.79
USP40-202ENST00000409945 H7C2G1 150 aa3.85□□□□□ -1.79
USP40-202ENST00000409945 NPC2P61916 151 aa3.85□□□□□ -1.79
USP40-202ENST00000409945 SPINK6Q6UWN8 80 aa3.85□□□□□ -1.79
USP40-202ENST00000409945 DAND5Q8N907 189 aa3.85□□□□□ -1.79
USP40-202ENST00000409945 C6orf99Q4VX62 202 aa3.84□□□□□ -1.79
USP40-202ENST00000409945 Q5XG85 94 aa3.84□□□□□ -1.79
USP40-202ENST00000409945 TEN1Q86WV5 123 aa3.84□□□□□ -1.79
USP40-202ENST00000409945 LINC01600Q96MT4 127 aa3.84□□□□□ -1.79
USP40-202ENST00000409945 TRAV13-2A0A0B4J235 113 aa3.83□□□□□ -1.8
USP40-202ENST00000409945 A0A1W2PNN7 141 aa3.83□□□□□ -1.8
USP40-202ENST00000409945 SLC25A20O43772 301 aa3.83□□□□□ -1.8
USP40-202ENST00000409945 C1orf137Q5JT78 98 aa3.83□□□□□ -1.8
USP40-202ENST00000409945 PPDPFLQ8WWR9 84 aa3.83□□□□□ -1.8
USP40-202ENST00000409945 MYCBP2O75592 4640 aa3.83□□□□□ -1.8
USP40-202ENST00000409945 LINC00158P58513 81 aa3.83□□□□□ -1.8
USP40-202ENST00000409945 KRTAP10-4P60372 401 aaPredicted RBP3.83□□□□□ -1.8
USP40-202ENST00000409945 COX17Q14061 63 aa3.83□□□□□ -1.8
USP40-202ENST00000409945 SOSTDC1Q6X4U4 206 aa3.83□□□□□ -1.8
USP40-202ENST00000409945 PHF5AQ7RTV0 110 aaKnown RBP3.83□□□□□ -1.8
USP40-202ENST00000409945 MIR7-3HGQ8N6C7 128 aa3.83□□□□□ -1.8
USP40-202ENST00000409945 TRBV10-2A0A0K0K1G8 114 aa3.82□□□□□ -1.8
USP40-202ENST00000409945 A8MU10 97 aa3.82□□□□□ -1.8
USP40-202ENST00000409945 H3BT86 120 aa3.82□□□□□ -1.8
USP40-202ENST00000409945 LST1O00453 97 aa3.82□□□□□ -1.8
USP40-202ENST00000409945 DIRC1Q969H9 104 aa3.82□□□□□ -1.8
USP40-202ENST00000409945 SND1-IT1Q9HBX3 110 aa3.82□□□□□ -1.8
USP40-202ENST00000409945 PSORS1C2Q9UIG4 136 aa3.82□□□□□ -1.8
USP40-202ENST00000409945 XAGE1AQ9HD64 81 aa3.82□□□□□ -1.8
USP40-202ENST00000409945 MP68P56378 58 aa3.81□□□□□ -1.8
USP40-202ENST00000409945 RPL28P46779 137 aaKnown RBP3.8□□□□□ -1.8
USP40-202ENST00000409945 C22orf24Q9Y442 160 aa3.8□□□□□ -1.8
USP40-202ENST00000409945 IGHV6-1A0A0B4J1U7 121 aa3.8□□□□□ -1.8
USP40-202ENST00000409945 PSPHP1O15172 72 aa3.8□□□□□ -1.8
USP40-202ENST00000409945 TRACP01848 142 aa3.8□□□□□ -1.8
USP40-202ENST00000409945 IGLV7-43P04211 117 aa3.8□□□□□ -1.8
USP40-202ENST00000409945 CLEC2BQ92478 149 aa3.8□□□□□ -1.8
USP40-202ENST00000409945 PKHD1L1Q86WI1 4243 aa3.79□□□□□ -1.8
USP40-202ENST00000409945 IGKV2-28A0A075B6P5 120 aa3.79□□□□□ -1.8
USP40-202ENST00000409945 IGKV2D-28P01615 120 aa3.79□□□□□ -1.8
USP40-202ENST00000409945 H0YGX0 51 aa3.78□□□□□ -1.8
USP40-202ENST00000409945 CCDC179H3BU77 68 aa3.78□□□□□ -1.8
USP40-202ENST00000409945 Q6Q795 121 aa3.78□□□□□ -1.8
USP40-202ENST00000409945 HERC1Q15751 4861 aa3.78□□□□□ -1.8
USP40-202ENST00000409945 UBE2AP49459 152 aa3.77□□□□□ -1.81
USP40-202ENST00000409945 SMIM11BQ8TCY0 68 aa3.77□□□□□ -1.81
USP40-202ENST00000409945 ANAPC11Q9NYG5 84 aa3.77□□□□□ -1.81
USP40-202ENST00000409945 LAMTOR3Q9UHA4 124 aa3.77□□□□□ -1.81
USP40-202ENST00000409945 ZNF706Q9Y5V0 76 aaPredicted RBP3.77□□□□□ -1.81
USP40-202ENST00000409945 TEX49A0A1B0GTD5 131 aa3.76□□□□□ -1.81
USP40-202ENST00000409945 BCE1O60756 84 aa3.76□□□□□ -1.81
USP40-202ENST00000409945 DNAL4O96015 105 aa3.76□□□□□ -1.81
USP40-202ENST00000409945 LINC00167Q96N53 147 aa3.76□□□□□ -1.81
USP40-202ENST00000409945 FAT3Q8TDW7 4589 aa3.76□□□□□ -1.81
USP40-202ENST00000409945 IGLV1-50A0A075B6I6 118 aa3.76□□□□□ -1.81
USP40-202ENST00000409945 LINC00313P59037 77 aa3.76□□□□□ -1.81
USP40-202ENST00000409945 FAM236AA0A1B0GUQ0 79 aa3.75□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 58.8 ms