RNA–Protein interactions for RNA: ENST00000396625.3

COL4A4-201, Transcript of collagen type IV alpha 4 chain, humanhuman

APPRIS P1 TSL 5 BASIC

Gene COL4A4, Length 9,895 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4-201ENST00000396625 KRTAP24-1Q3LI83 254 aa6.59□□□□□ -1.35
COL4A4-201ENST00000396625 LINC01558Q9Y6Z2 57 aa6.57□□□□□ -1.36
COL4A4-201ENST00000396625 ITPR1Q14643 2758 aa6.57□□□□□ -1.36
COL4A4-201ENST00000396625 KRTAP10-11P60412 298 aa6.57□□□□□ -1.36
COL4A4-201ENST00000396625 CNBPP62633 177 aaKnown RBP6.56□□□□□ -1.36
COL4A4-201ENST00000396625 Q5VV11 94 aa6.56□□□□□ -1.36
COL4A4-201ENST00000396625 GIG44P09565 113 aaPredicted RBP6.55□□□□□ -1.36
COL4A4-201ENST00000396625 Q8N9P0 234 aaPredicted RBP6.55□□□□□ -1.36
COL4A4-201ENST00000396625 ZNF292O60281 2723 aa6.53□□□□□ -1.36
COL4A4-201ENST00000396625 ROMO1P60602 79 aa6.53□□□□□ -1.36
COL4A4-201ENST00000396625 K7EIL1 84 aa6.52□□□□□ -1.37
COL4A4-201ENST00000396625 R4GN34 69 aa6.51□□□□□ -1.37
COL4A4-201ENST00000396625 FP248Q71RG6 208 aaPredicted RBP6.51□□□□□ -1.37
COL4A4-201ENST00000396625 LINC00612Q8N6U2 182 aa6.51□□□□□ -1.37
COL4A4-201ENST00000396625 C19orf73Q9NVV2 129 aa6.5□□□□□ -1.37
COL4A4-201ENST00000396625 H1FX-AS1Q4G0G2 97 aa6.5□□□□□ -1.37
COL4A4-201ENST00000396625 SETXQ7Z333 2677 aaKnown RBP6.5□□□□□ -1.37
COL4A4-201ENST00000396625 KRTAP16-1A8MUX0 517 aa6.49□□□□□ -1.37
COL4A4-201ENST00000396625 ZCCHC13Q8WW36 166 aaKnown RBP6.49□□□□□ -1.37
COL4A4-201ENST00000396625 C5orf42Q9H799 3197 aa6.49□□□□□ -1.37
COL4A4-201ENST00000396625 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.48□□□□□ -1.37
COL4A4-201ENST00000396625 CASC10Q5T4H9 136 aa6.48□□□□□ -1.37
COL4A4-201ENST00000396625 PCNTO95613 3336 aa6.46□□□□□ -1.38
COL4A4-201ENST00000396625 TNP2Q05952 138 aa6.45□□□□□ -1.38
COL4A4-201ENST00000396625 IGSF10Q6WRI0 2623 aa6.44□□□□□ -1.38
COL4A4-201ENST00000396625 CFAP54Q96N23 3096 aa6.44□□□□□ -1.38
COL4A4-201ENST00000396625 NBEAL2Q6ZNJ1 2754 aa6.44□□□□□ -1.38
COL4A4-201ENST00000396625 Q5W150 140 aa6.44□□□□□ -1.38
COL4A4-201ENST00000396625 RPL37P61927 97 aaKnown RBP6.43□□□□□ -1.38
COL4A4-201ENST00000396625 MMP24-AS1A0A0U1RRL7 71 aa6.42□□□□□ -1.38
COL4A4-201ENST00000396625 CYSTM1Q9H1C7 97 aa6.42□□□□□ -1.38
COL4A4-201ENST00000396625 TRANK1O15050 2925 aa6.4□□□□□ -1.39
COL4A4-201ENST00000396625 UBR5O95071 2799 aaPredicted RBP6.39□□□□□ -1.39
COL4A4-201ENST00000396625 A0A0C4DFX4 3053 aa6.39□□□□□ -1.39
COL4A4-201ENST00000396625 M0QZ58 72 aa6.39□□□□□ -1.39
COL4A4-201ENST00000396625 UTRNP46939 3433 aa6.39□□□□□ -1.39
COL4A4-201ENST00000396625 PLAC4Q8WY50 150 aa6.38□□□□□ -1.39
COL4A4-201ENST00000396625 LRBAP50851 2863 aa6.34□□□□□ -1.4
COL4A4-201ENST00000396625 A0A096LNT2 108 aa6.33□□□□□ -1.4
COL4A4-201ENST00000396625 DSPP15924 2871 aaKnown RBP6.31□□□□□ -1.4
COL4A4-201ENST00000396625 SEC61BP60468 96 aaKnown RBP6.3□□□□□ -1.4
COL4A4-201ENST00000396625 KRTAP10-3P60369 221 aa6.3□□□□□ -1.4
COL4A4-201ENST00000396625 A0A087X002 238 aa6.3□□□□□ -1.4
COL4A4-201ENST00000396625 ADM2Q7Z4H4 148 aa6.29□□□□□ -1.4
COL4A4-201ENST00000396625 SPATA8Q6RVD6 105 aa6.29□□□□□ -1.4
COL4A4-201ENST00000396625 CHD9Q3L8U1 2897 aa6.28□□□□□ -1.4
COL4A4-201ENST00000396625 LAMA2P24043 3122 aaKnown RBP6.28□□□□□ -1.4
COL4A4-201ENST00000396625 LINC00472Q9H8W2 130 aa6.28□□□□□ -1.4
COL4A4-201ENST00000396625 FLNCQ14315 2725 aa6.27□□□□□ -1.41
COL4A4-201ENST00000396625 C20orf166-AS1Q96NR2 134 aa6.26□□□□□ -1.41
COL4A4-201ENST00000396625 Q8NDZ9 215 aa6.25□□□□□ -1.41
COL4A4-201ENST00000396625 OXTP01178 125 aa6.25□□□□□ -1.41
COL4A4-201ENST00000396625 PLAC8Q9NZF1 115 aa6.22□□□□□ -1.41
COL4A4-201ENST00000396625 NDUFAF8A1L188 74 aa6.22□□□□□ -1.41
COL4A4-201ENST00000396625 KRTAP25-1Q3LHN0 102 aa6.21□□□□□ -1.42
COL4A4-201ENST00000396625 CHD7Q9P2D1 2997 aa6.2□□□□□ -1.42
COL4A4-201ENST00000396625 A6NN06 94 aa6.2□□□□□ -1.42
COL4A4-201ENST00000396625 PANO1I0J062 215 aa6.2□□□□□ -1.42
COL4A4-201ENST00000396625 Q6ZR54 194 aa6.18□□□□□ -1.42
COL4A4-201ENST00000396625 KRTAP26-1Q6PEX3 210 aa6.17□□□□□ -1.42
COL4A4-201ENST00000396625 MGAQ8IWI9 3026 aa6.17□□□□□ -1.42
COL4A4-201ENST00000396625 SPRR1AP35321 89 aa6.17□□□□□ -1.42
COL4A4-201ENST00000396625 HTTP42858 3142 aa6.17□□□□□ -1.42
COL4A4-201ENST00000396625 Q5VSD8 79 aa6.12□□□□□ -1.43
COL4A4-201ENST00000396625 SPRR1BP22528 89 aa6.12□□□□□ -1.43
COL4A4-201ENST00000396625 FRYQ5TBA9 3013 aa6.11□□□□□ -1.43
COL4A4-201ENST00000396625 TRIOO75962 3097 aa6.09□□□□□ -1.43
COL4A4-201ENST00000396625 C10orf95Q9H7T3 257 aa6.09□□□□□ -1.44
COL4A4-201ENST00000396625 TENM3Q9P273 2699 aa6.09□□□□□ -1.44
COL4A4-201ENST00000396625 VPS13AQ96RL7 3174 aa6.08□□□□□ -1.44
COL4A4-201ENST00000396625 KALRNO60229 2985 aa6.07□□□□□ -1.44
COL4A4-201ENST00000396625 HIVEP1P15822 2718 aa6.07□□□□□ -1.44
COL4A4-201ENST00000396625 ASH1LQ9NR48 2969 aaKnown RBP6.06□□□□□ -1.44
COL4A4-201ENST00000396625 NF1P21359 2839 aa6.06□□□□□ -1.44
COL4A4-201ENST00000396625 FRYLO94915 3013 aa6.06□□□□□ -1.44
COL4A4-201ENST00000396625 NIPBLQ6KC79 2804 aaeCLIP6.05□□□□□ -1.44
COL4A4-201ENST00000396625 A8MU10 97 aa6.05□□□□□ -1.44
COL4A4-201ENST00000396625 A8MUU9 505 aa6.03□□□□□ -1.44
COL4A4-201ENST00000396625 TENM1Q9UKZ4 2725 aa6.02□□□□□ -1.45
COL4A4-201ENST00000396625 MKI67P46013 3256 aaKnown RBP6□□□□□ -1.45
COL4A4-201ENST00000396625 KRTAP1-3Q8IUG1 177 aa6□□□□□ -1.45
COL4A4-201ENST00000396625 LCE6AA0A183 80 aa6□□□□□ -1.45
COL4A4-201ENST00000396625 KRTAP29-1A8MX34 341 aaPredicted RBP5.98□□□□□ -1.45
COL4A4-201ENST00000396625 FREM2Q5SZK8 3169 aa5.98□□□□□ -1.45
COL4A4-201ENST00000396625 PDZD2O15018 2839 aa5.98□□□□□ -1.45
COL4A4-201ENST00000396625 KRTAP1-1Q07627 177 aa5.98□□□□□ -1.45
COL4A4-201ENST00000396625 SRRM2Q9UQ35 2752 aaKnown RBP5.98□□□□□ -1.45
COL4A4-201ENST00000396625 NBEAQ8NFP9 2946 aa5.98□□□□□ -1.45
COL4A4-201ENST00000396625 RANBP2P49792 3224 aaKnown RBP5.97□□□□□ -1.45
COL4A4-201ENST00000396625 KRTAP1-5Q9BYS1 174 aa5.97□□□□□ -1.45
COL4A4-201ENST00000396625 TGP01266 2768 aa5.95□□□□□ -1.46
COL4A4-201ENST00000396625 CRYBG3Q68DQ2 2970 aa5.95□□□□□ -1.46
COL4A4-201ENST00000396625 XIRP2A4UGR9 3374 aa5.94□□□□□ -1.46
COL4A4-201ENST00000396625 KRTAP10-1P60331 282 aa5.94□□□□□ -1.46
COL4A4-201ENST00000396625 WDFY4Q6ZS81 3184 aa5.93□□□□□ -1.46
COL4A4-201ENST00000396625 TNP1P09430 55 aa5.93□□□□□ -1.46
COL4A4-201ENST00000396625 TACC2O95359 2948 aa5.92□□□□□ -1.46
COL4A4-201ENST00000396625 KRTAP10-2P60368 255 aa5.92□□□□□ -1.46
COL4A4-201ENST00000396625 CELSR2Q9HCU4 2923 aa5.92□□□□□ -1.46
COL4A4-201ENST00000396625 COL12A1Q99715 3063 aa5.91□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms