RNA–Protein interactions for RNA: ENST00000373887.7

TRAF1-201, Transcript of TNF receptor associated factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRAF1, Length 6,324 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF1-201ENST00000373887 MGAQ8IWI9 3026 aa8.9□□□□□ -0.99
TRAF1-201ENST00000373887 UNC80Q8N2C7 3258 aa8.89□□□□□ -0.99
TRAF1-201ENST00000373887 CDH23Q9H251 3354 aa8.89□□□□□ -0.99
TRAF1-201ENST00000373887 A0A0A0MQY5 61 aa8.88□□□□□ -0.99
TRAF1-201ENST00000373887 CSAG1Q6PB30 78 aa8.88□□□□□ -0.99
TRAF1-201ENST00000373887 Q8N9P0 234 aaPredicted RBP8.88□□□□□ -0.99
TRAF1-201ENST00000373887 DMAC1Q96GE9 116 aa8.86□□□□□ -0.99
TRAF1-201ENST00000373887 SPINK7P58062 85 aa8.85□□□□□ -0.99
TRAF1-201ENST00000373887 ZCCHC13Q8WW36 166 aaKnown RBP8.84□□□□□ -1
TRAF1-201ENST00000373887 LAMA2P24043 3122 aaKnown RBP8.83□□□□□ -1
TRAF1-201ENST00000373887 CENPEQ02224 2701 aa8.82□□□□□ -1
TRAF1-201ENST00000373887 WDFY4Q6ZS81 3184 aa8.82□□□□□ -1
TRAF1-201ENST00000373887 LINC01558Q9Y6Z2 57 aa8.81□□□□□ -1
TRAF1-201ENST00000373887 MMP24-AS1A0A0U1RRL7 71 aa8.8□□□□□ -1
TRAF1-201ENST00000373887 Q5VSD8 79 aa8.79□□□□□ -1
TRAF1-201ENST00000373887 R4GN34 69 aa8.78□□□□□ -1
TRAF1-201ENST00000373887 KRTAP1-5Q9BYS1 174 aa8.77□□□□□ -1
TRAF1-201ENST00000373887 A0A0C4DFX4 3053 aa8.77□□□□□ -1.01
TRAF1-201ENST00000373887 Q5XG85 94 aa8.77□□□□□ -1.01
TRAF1-201ENST00000373887 Q5W150 140 aa8.75□□□□□ -1.01
TRAF1-201ENST00000373887 TEP1Q99973 2627 aaKnown RBP8.75□□□□□ -1.01
TRAF1-201ENST00000373887 TRANK1O15050 2925 aa8.74□□□□□ -1.01
TRAF1-201ENST00000373887 PLAC8Q9NZF1 115 aa8.74□□□□□ -1.01
TRAF1-201ENST00000373887 TRIOO75962 3097 aa8.74□□□□□ -1.01
TRAF1-201ENST00000373887 AKAP13Q12802 2813 aa8.74□□□□□ -1.01
TRAF1-201ENST00000373887 Q5VV11 94 aa8.74□□□□□ -1.01
TRAF1-201ENST00000373887 KRTAP10-2P60368 255 aa8.74□□□□□ -1.01
TRAF1-201ENST00000373887 CYSTM1Q9H1C7 97 aa8.73□□□□□ -1.01
TRAF1-201ENST00000373887 LCE6AA0A183 80 aa8.72□□□□□ -1.01
TRAF1-201ENST00000373887 FP248Q71RG6 208 aaPredicted RBP8.71□□□□□ -1.02
TRAF1-201ENST00000373887 KRTAP10-1P60331 282 aa8.71□□□□□ -1.02
TRAF1-201ENST00000373887 Q8NDZ9 215 aa8.7□□□□□ -1.02
TRAF1-201ENST00000373887 CELSR3Q9NYQ7 3312 aa8.69□□□□□ -1.02
TRAF1-201ENST00000373887 TEX15Q9BXT5 2789 aa8.68□□□□□ -1.02
TRAF1-201ENST00000373887 ROMO1P60602 79 aa8.67□□□□□ -1.02
TRAF1-201ENST00000373887 SZT2Q5T011 3432 aa8.65□□□□□ -1.02
TRAF1-201ENST00000373887 M0QZ58 72 aa8.65□□□□□ -1.03
TRAF1-201ENST00000373887 H1FX-AS1Q4G0G2 97 aa8.64□□□□□ -1.03
TRAF1-201ENST00000373887 RPL37P61927 97 aaKnown RBP8.62□□□□□ -1.03
TRAF1-201ENST00000373887 ZNF292O60281 2723 aa8.61□□□□□ -1.03
TRAF1-201ENST00000373887 DSPP15924 2871 aaKnown RBP8.61□□□□□ -1.03
TRAF1-201ENST00000373887 SETXQ7Z333 2677 aaKnown RBP8.6□□□□□ -1.03
TRAF1-201ENST00000373887 CHD6Q8TD26 2715 aa8.59□□□□□ -1.03
TRAF1-201ENST00000373887 BAHCC1Q9P281 2608 aa8.59□□□□□ -1.03
TRAF1-201ENST00000373887 DNAH14Q0VDD8 3507 aa8.58□□□□□ -1.04
TRAF1-201ENST00000373887 LINC00472Q9H8W2 130 aa8.58□□□□□ -1.04
TRAF1-201ENST00000373887 SPATA8Q6RVD6 105 aa8.58□□□□□ -1.04
TRAF1-201ENST00000373887 SEC61BP60468 96 aaKnown RBP8.56□□□□□ -1.04
TRAF1-201ENST00000373887 ADM2Q7Z4H4 148 aa8.54□□□□□ -1.04
TRAF1-201ENST00000373887 VPS13AQ96RL7 3174 aa8.54□□□□□ -1.04
TRAF1-201ENST00000373887 PLAC4Q8WY50 150 aa8.54□□□□□ -1.04
TRAF1-201ENST00000373887 PANO1I0J062 215 aa8.53□□□□□ -1.04
TRAF1-201ENST00000373887 SPRR1AP35321 89 aa8.53□□□□□ -1.04
TRAF1-201ENST00000373887 KRTAP26-1Q6PEX3 210 aa8.51□□□□□ -1.05
TRAF1-201ENST00000373887 COL6A5A8TX70 2615 aa8.48□□□□□ -1.05
TRAF1-201ENST00000373887 STAB1Q9NY15 2570 aa8.48□□□□□ -1.05
TRAF1-201ENST00000373887 IGSF10Q6WRI0 2623 aa8.48□□□□□ -1.05
TRAF1-201ENST00000373887 OXTP01178 125 aa8.47□□□□□ -1.05
TRAF1-201ENST00000373887 VCANP13611 3396 aa8.46□□□□□ -1.05
TRAF1-201ENST00000373887 SPRR1BP22528 89 aa8.44□□□□□ -1.06
TRAF1-201ENST00000373887 FRYQ5TBA9 3013 aa8.44□□□□□ -1.06
TRAF1-201ENST00000373887 COL6A3P12111 3177 aa8.44□□□□□ -1.06
TRAF1-201ENST00000373887 MAP1AP78559 2803 aaPredicted RBP8.43□□□□□ -1.06
TRAF1-201ENST00000373887 Q6ZR54 194 aa8.41□□□□□ -1.06
TRAF1-201ENST00000373887 FREM2Q5SZK8 3169 aa8.39□□□□□ -1.07
TRAF1-201ENST00000373887 LAMA1P25391 3075 aa8.39□□□□□ -1.07
TRAF1-201ENST00000373887 KRTAP16-1A8MUX0 517 aa8.37□□□□□ -1.07
TRAF1-201ENST00000373887 C20orf166-AS1Q96NR2 134 aa8.37□□□□□ -1.07
TRAF1-201ENST00000373887 GCN1Q92616 2671 aaKnown RBP8.37□□□□□ -1.07
TRAF1-201ENST00000373887 A0A087X002 238 aa8.37□□□□□ -1.07
TRAF1-201ENST00000373887 UNC79Q9P2D8 2635 aa8.36□□□□□ -1.07
TRAF1-201ENST00000373887 SPTBN5Q9NRC6 3674 aaKnown RBP8.35□□□□□ -1.07
TRAF1-201ENST00000373887 NBEAL1Q6ZS30 2694 aa8.34□□□□□ -1.07
TRAF1-201ENST00000373887 NOTCH1P46531 2555 aa8.33□□□□□ -1.08
TRAF1-201ENST00000373887 NBEAL2Q6ZNJ1 2754 aa8.31□□□□□ -1.08
TRAF1-201ENST00000373887 A8MU10 97 aa8.3□□□□□ -1.08
TRAF1-201ENST00000373887 KRTAP11-1Q8IUC1 163 aa8.26□□□□□ -1.09
TRAF1-201ENST00000373887 BOD1L1Q8NFC6 3051 aa8.26□□□□□ -1.09
TRAF1-201ENST00000373887 ITPR2Q14571 2701 aa8.26□□□□□ -1.09
TRAF1-201ENST00000373887 REV3LO60673 3130 aa8.25□□□□□ -1.09
TRAF1-201ENST00000373887 ATMQ13315 3056 aa8.25□□□□□ -1.09
TRAF1-201ENST00000373887 FLG2Q5D862 2391 aaPredicted RBP8.25□□□□□ -1.09
TRAF1-201ENST00000373887 CRYBG3Q68DQ2 2970 aa8.24□□□□□ -1.09
TRAF1-201ENST00000373887 FRYLO94915 3013 aa8.24□□□□□ -1.09
TRAF1-201ENST00000373887 NOTCH2NLQ7Z3S9 236 aa8.24□□□□□ -1.09
TRAF1-201ENST00000373887 KRTAP25-1Q3LHN0 102 aa8.24□□□□□ -1.09
TRAF1-201ENST00000373887 UBR5O95071 2799 aaPredicted RBP8.24□□□□□ -1.09
TRAF1-201ENST00000373887 CFAP47Q6ZTR5 3102 aa8.23□□□□□ -1.09
TRAF1-201ENST00000373887 TACC2O95359 2948 aa8.21□□□□□ -1.09
TRAF1-201ENST00000373887 ASB16-AS1Q495Z4 193 aa8.21□□□□□ -1.1
TRAF1-201ENST00000373887 COL12A1Q99715 3063 aa8.21□□□□□ -1.1
TRAF1-201ENST00000373887 Q6ZRN7 208 aaPredicted RBP8.2□□□□□ -1.1
TRAF1-201ENST00000373887 KRTAP29-1A8MX34 341 aaPredicted RBP8.2□□□□□ -1.1
TRAF1-201ENST00000373887 A8MUU9 505 aa8.2□□□□□ -1.1
TRAF1-201ENST00000373887 LRBAP50851 2863 aa8.2□□□□□ -1.1
TRAF1-201ENST00000373887 KALRNO60229 2985 aa8.19□□□□□ -1.1
TRAF1-201ENST00000373887 NDUFAF8A1L188 74 aa8.19□□□□□ -1.1
TRAF1-201ENST00000373887 KRTAP4-16G5E9R7 235 aaPredicted RBP8.18□□□□□ -1.1
TRAF1-201ENST00000373887 EYSQ5T1H1 3165 aa8.17□□□□□ -1.1
TRAF1-201ENST00000373887 DMXL2Q8TDJ6 3036 aa8.17□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms