RNA–Protein interactions for RNA: ENST00000367256.9

SYNE1-208, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,742 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-208ENST00000367256 ZNF292O60281 2723 aa4.64□□□□□ -1.67
SYNE1-208ENST00000367256 CASC10Q5T4H9 136 aa4.63□□□□□ -1.67
SYNE1-208ENST00000367256 HRES1P13985 223 aa4.63□□□□□ -1.67
SYNE1-208ENST00000367256 M0R2T5 61 aa4.62□□□□□ -1.67
SYNE1-208ENST00000367256 NOTCH2NLQ7Z3S9 236 aa4.62□□□□□ -1.67
SYNE1-208ENST00000367256 ITPR1Q14643 2758 aa4.62□□□□□ -1.67
SYNE1-208ENST00000367256 FP248Q71RG6 208 aaPredicted RBP4.61□□□□□ -1.67
SYNE1-208ENST00000367256 A0A096LNT2 108 aa4.6□□□□□ -1.67
SYNE1-208ENST00000367256 FAM229BQ4G0N7 80 aa4.6□□□□□ -1.67
SYNE1-208ENST00000367256 PRAC1Q96KF2 57 aa4.6□□□□□ -1.67
SYNE1-208ENST00000367256 CSAG1Q6PB30 78 aa4.58□□□□□ -1.68
SYNE1-208ENST00000367256 MGAQ8IWI9 3026 aa4.58□□□□□ -1.68
SYNE1-208ENST00000367256 Q5VV11 94 aa4.58□□□□□ -1.68
SYNE1-208ENST00000367256 KRTAP10-3P60369 221 aa4.58□□□□□ -1.68
SYNE1-208ENST00000367256 SETXQ7Z333 2677 aaKnown RBP4.58□□□□□ -1.68
SYNE1-208ENST00000367256 ZCCHC13Q8WW36 166 aaKnown RBP4.57□□□□□ -1.68
SYNE1-208ENST00000367256 SPINK7P58062 85 aa4.57□□□□□ -1.68
SYNE1-208ENST00000367256 NSD1Q96L73 2696 aaPredicted RBP4.56□□□□□ -1.68
SYNE1-208ENST00000367256 MMP24-AS1A0A0U1RRL7 71 aa4.55□□□□□ -1.68
SYNE1-208ENST00000367256 EP400Q96L91 3159 aa4.55□□□□□ -1.68
SYNE1-208ENST00000367256 SPRR1AP35321 89 aa4.55□□□□□ -1.68
SYNE1-208ENST00000367256 APCP25054 2843 aa4.54□□□□□ -1.68
SYNE1-208ENST00000367256 ITPR2Q14571 2701 aa4.54□□□□□ -1.68
SYNE1-208ENST00000367256 SPRR1BP22528 89 aa4.53□□□□□ -1.68
SYNE1-208ENST00000367256 SRCAPQ6ZRS2 3230 aa4.53□□□□□ -1.68
SYNE1-208ENST00000367256 TNP2Q05952 138 aa4.53□□□□□ -1.68
SYNE1-208ENST00000367256 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP4.53□□□□□ -1.68
SYNE1-208ENST00000367256 Q5W150 140 aa4.52□□□□□ -1.69
SYNE1-208ENST00000367256 R4GN34 69 aa4.52□□□□□ -1.69
SYNE1-208ENST00000367256 ROMO1P60602 79 aa4.51□□□□□ -1.69
SYNE1-208ENST00000367256 LINC00472Q9H8W2 130 aa4.51□□□□□ -1.69
SYNE1-208ENST00000367256 CYSTM1Q9H1C7 97 aa4.51□□□□□ -1.69
SYNE1-208ENST00000367256 NBEAL2Q6ZNJ1 2754 aa4.5□□□□□ -1.69
SYNE1-208ENST00000367256 CHD9Q3L8U1 2897 aa4.49□□□□□ -1.69
SYNE1-208ENST00000367256 A0A0C4DFX4 3053 aa4.49□□□□□ -1.69
SYNE1-208ENST00000367256 UTRNP46939 3433 aa4.48□□□□□ -1.69
SYNE1-208ENST00000367256 SRRM2Q9UQ35 2752 aaKnown RBP4.47□□□□□ -1.69
SYNE1-208ENST00000367256 LRBAP50851 2863 aa4.46□□□□□ -1.7
SYNE1-208ENST00000367256 Q6ZR54 194 aa4.46□□□□□ -1.7
SYNE1-208ENST00000367256 M0QZ58 72 aa4.45□□□□□ -1.7
SYNE1-208ENST00000367256 RPL37P61927 97 aaKnown RBP4.45□□□□□ -1.7
SYNE1-208ENST00000367256 PLAC8Q9NZF1 115 aa4.45□□□□□ -1.7
SYNE1-208ENST00000367256 DSPP15924 2871 aaKnown RBP4.45□□□□□ -1.7
SYNE1-208ENST00000367256 PCNTO95613 3336 aa4.45□□□□□ -1.7
SYNE1-208ENST00000367256 OXTP01178 125 aa4.44□□□□□ -1.7
SYNE1-208ENST00000367256 H1FX-AS1Q4G0G2 97 aa4.44□□□□□ -1.7
SYNE1-208ENST00000367256 GOLGB1Q14789 3259 aaKnown RBP4.43□□□□□ -1.7
SYNE1-208ENST00000367256 IGSF10Q6WRI0 2623 aa4.42□□□□□ -1.7
SYNE1-208ENST00000367256 Q8NDZ9 215 aa4.41□□□□□ -1.7
SYNE1-208ENST00000367256 KRTAP1-3Q8IUG1 177 aa4.4□□□□□ -1.7
SYNE1-208ENST00000367256 KRTAP1-1Q07627 177 aa4.4□□□□□ -1.71
SYNE1-208ENST00000367256 PLAC4Q8WY50 150 aa4.4□□□□□ -1.71
SYNE1-208ENST00000367256 ADM2Q7Z4H4 148 aa4.39□□□□□ -1.71
SYNE1-208ENST00000367256 A6NN06 94 aa4.38□□□□□ -1.71
SYNE1-208ENST00000367256 Q5VSD8 79 aa4.38□□□□□ -1.71
SYNE1-208ENST00000367256 SPATA8Q6RVD6 105 aa4.38□□□□□ -1.71
SYNE1-208ENST00000367256 CEP350Q5VT06 3117 aa4.38□□□□□ -1.71
SYNE1-208ENST00000367256 ZFHX3Q15911 3703 aa4.38□□□□□ -1.71
SYNE1-208ENST00000367256 KRTAP29-1A8MX34 341 aaPredicted RBP4.37□□□□□ -1.71
SYNE1-208ENST00000367256 KRTAP26-1Q6PEX3 210 aa4.37□□□□□ -1.71
SYNE1-208ENST00000367256 DNAH12Q6ZR08 3092 aa4.37□□□□□ -1.71
SYNE1-208ENST00000367256 CHD7Q9P2D1 2997 aa4.36□□□□□ -1.71
SYNE1-208ENST00000367256 LCE6AA0A183 80 aa4.35□□□□□ -1.71
SYNE1-208ENST00000367256 TRANK1O15050 2925 aa4.35□□□□□ -1.71
SYNE1-208ENST00000367256 PANO1I0J062 215 aa4.35□□□□□ -1.71
SYNE1-208ENST00000367256 FLNCQ14315 2725 aa4.34□□□□□ -1.71
SYNE1-208ENST00000367256 KRTAP4-16G5E9R7 235 aaPredicted RBP4.34□□□□□ -1.71
SYNE1-208ENST00000367256 NIPBLQ6KC79 2804 aaeCLIP4.32□□□□□ -1.72
SYNE1-208ENST00000367256 KRTAP1-5Q9BYS1 174 aa4.3□□□□□ -1.72
SYNE1-208ENST00000367256 FRYLO94915 3013 aa4.29□□□□□ -1.72
SYNE1-208ENST00000367256 C20orf166-AS1Q96NR2 134 aa4.28□□□□□ -1.72
SYNE1-208ENST00000367256 HIVEP1P15822 2718 aa4.28□□□□□ -1.72
SYNE1-208ENST00000367256 KRTAP25-1Q3LHN0 102 aa4.28□□□□□ -1.72
SYNE1-208ENST00000367256 RPS29P62273 56 aaKnown RBP4.27□□□□□ -1.73
SYNE1-208ENST00000367256 CFAP54Q96N23 3096 aa4.26□□□□□ -1.73
SYNE1-208ENST00000367256 KRTAP10-1P60331 282 aa4.26□□□□□ -1.73
SYNE1-208ENST00000367256 C5orf42Q9H799 3197 aa4.26□□□□□ -1.73
SYNE1-208ENST00000367256 KRTAP10-2P60368 255 aa4.25□□□□□ -1.73
SYNE1-208ENST00000367256 NDUFAF8A1L188 74 aa4.24□□□□□ -1.73
SYNE1-208ENST00000367256 LAMA2P24043 3122 aaKnown RBP4.21□□□□□ -1.74
SYNE1-208ENST00000367256 A8MUU9 505 aa4.21□□□□□ -1.74
SYNE1-208ENST00000367256 A8MU10 97 aa4.2□□□□□ -1.74
SYNE1-208ENST00000367256 XIRP2A4UGR9 3374 aa4.2□□□□□ -1.74
SYNE1-208ENST00000367256 PDZD2O15018 2839 aa4.2□□□□□ -1.74
SYNE1-208ENST00000367256 REV3LO60673 3130 aa4.19□□□□□ -1.74
SYNE1-208ENST00000367256 TENM3Q9P273 2699 aa4.19□□□□□ -1.74
SYNE1-208ENST00000367256 KALRNO60229 2985 aa4.19□□□□□ -1.74
SYNE1-208ENST00000367256 C10orf95Q9H7T3 257 aa4.18□□□□□ -1.74
SYNE1-208ENST00000367256 TACC2O95359 2948 aa4.17□□□□□ -1.74
SYNE1-208ENST00000367256 FRYQ5TBA9 3013 aa4.16□□□□□ -1.74
SYNE1-208ENST00000367256 USP34Q70CQ2 3546 aa4.15□□□□□ -1.75
SYNE1-208ENST00000367256 NF1P21359 2839 aa4.13□□□□□ -1.75
SYNE1-208ENST00000367256 TENM1Q9UKZ4 2725 aa4.13□□□□□ -1.75
SYNE1-208ENST00000367256 CELSR2Q9HCU4 2923 aa4.12□□□□□ -1.75
SYNE1-208ENST00000367256 PP632Q6XCG6 107 aa4.11□□□□□ -1.75
SYNE1-208ENST00000367256 KRTAP13-1Q8IUC0 172 aa4.1□□□□□ -1.75
SYNE1-208ENST00000367256 TNP1P09430 55 aa4.1□□□□□ -1.75
SYNE1-208ENST00000367256 ASH1LQ9NR48 2969 aaKnown RBP4.1□□□□□ -1.75
SYNE1-208ENST00000367256 DNAH14Q0VDD8 3507 aa4.09□□□□□ -1.75
SYNE1-208ENST00000367256 KRTAP11-1Q8IUC1 163 aa4.09□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 63.9 ms