RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 TRIAP1O43715 76 aa9.15□□□□□ -0.94
CCDC28A-201ENST00000332797 SMIM29Q86T20 159 aa9.15□□□□□ -0.94
CCDC28A-201ENST00000332797 PRR4Q16378 134 aa9.15□□□□□ -0.95
CCDC28A-201ENST00000332797 KRTAP3-3Q9BYR6 98 aa9.15□□□□□ -0.95
CCDC28A-201ENST00000332797 KRTAP3-2Q9BYR7 98 aa9.15□□□□□ -0.95
CCDC28A-201ENST00000332797 H3BUT2 72 aa9.14□□□□□ -0.95
CCDC28A-201ENST00000332797 COX6CP09669 75 aa9.14□□□□□ -0.95
CCDC28A-201ENST00000332797 PSMB2P49721 201 aa9.14□□□□□ -0.95
CCDC28A-201ENST00000332797 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP9.14□□□□□ -0.95
CCDC28A-201ENST00000332797 FAM218AQ96MZ4 157 aa9.14□□□□□ -0.95
CCDC28A-201ENST00000332797 RETNLBQ9BQ08 111 aa9.14□□□□□ -0.95
CCDC28A-201ENST00000332797 SNCGO76070 127 aa9.13□□□□□ -0.95
CCDC28A-201ENST00000332797 SPINK1P00995 79 aa9.13□□□□□ -0.95
CCDC28A-201ENST00000332797 LYRM7Q5U5X0 104 aa9.13□□□□□ -0.95
CCDC28A-201ENST00000332797 A0A1W2PPM0 123 aa9.1□□□□□ -0.95
CCDC28A-201ENST00000332797 F8WEM9 126 aa9.09□□□□□ -0.95
CCDC28A-201ENST00000332797 SCGB1C2P0DMR2 95 aa9.09□□□□□ -0.95
CCDC28A-201ENST00000332797 FABP2P12104 132 aa9.09□□□□□ -0.95
CCDC28A-201ENST00000332797 CLEC2BQ92478 149 aa9.09□□□□□ -0.95
CCDC28A-201ENST00000332797 HRCT1Q6UXD1 115 aa9.08□□□□□ -0.96
CCDC28A-201ENST00000332797 NAA38Q9BRA0 125 aaKnown RBP9.08□□□□□ -0.96
CCDC28A-201ENST00000332797 A0A1B0GX51 115 aa9.08□□□□□ -0.96
CCDC28A-201ENST00000332797 PPDPFLQ8WWR9 84 aa9.08□□□□□ -0.96
CCDC28A-201ENST00000332797 RPS29P62273 56 aaKnown RBP9.07□□□□□ -0.96
CCDC28A-201ENST00000332797 TRBV20-1A0A075B6N2 111 aa9.06□□□□□ -0.96
CCDC28A-201ENST00000332797 OCIAD2Q56VL3 154 aa9.06□□□□□ -0.96
CCDC28A-201ENST00000332797 LRP2P98164 4655 aa9.06□□□□□ -0.96
CCDC28A-201ENST00000332797 A0A0G2JQZ4 141 aa9.05□□□□□ -0.96
CCDC28A-201ENST00000332797 LPAP08519 4548 aa9.03□□□□□ -0.96
CCDC28A-201ENST00000332797 DNAL4O96015 105 aa9.02□□□□□ -0.96
CCDC28A-201ENST00000332797 SPCS1Q9Y6A9 102 aa9.02□□□□□ -0.96
CCDC28A-201ENST00000332797 CD164Q04900 197 aa9.02□□□□□ -0.97
CCDC28A-201ENST00000332797 ATXN8Q156A1 80 aa9.02□□□□□ -0.97
CCDC28A-201ENST00000332797 GTF2H5Q6ZYL4 71 aa9.02□□□□□ -0.97
CCDC28A-201ENST00000332797 IGLV7-46A0A075B6I9 117 aa9.01□□□□□ -0.97
CCDC28A-201ENST00000332797 TCL1BO95988 128 aa9.01□□□□□ -0.97
CCDC28A-201ENST00000332797 LIMD2Q9BT23 127 aa9.01□□□□□ -0.97
CCDC28A-201ENST00000332797 UBR4Q5T4S7 5183 aa9□□□□□ -0.97
CCDC28A-201ENST00000332797 IGLV8-61A0A075B6I0 122 aa9□□□□□ -0.97
CCDC28A-201ENST00000332797 A0A1B0GV90 55 aa9□□□□□ -0.97
CCDC28A-201ENST00000332797 K7EP34 96 aa9□□□□□ -0.97
CCDC28A-201ENST00000332797 LST1O00453 97 aa9□□□□□ -0.97
CCDC28A-201ENST00000332797 GHRHP01286 108 aa9□□□□□ -0.97
CCDC28A-201ENST00000332797 Q6JHZ5 121 aa9□□□□□ -0.97
CCDC28A-201ENST00000332797 TRACP01848 142 aa8.98□□□□□ -0.97
CCDC28A-201ENST00000332797 NDUFV3P56181 108 aaKnown RBP8.98□□□□□ -0.97
CCDC28A-201ENST00000332797 IGFL1Q6UW32 110 aa8.98□□□□□ -0.97
CCDC28A-201ENST00000332797 FP248Q71RG6 208 aaPredicted RBP8.98□□□□□ -0.97
CCDC28A-201ENST00000332797 ORMDL1Q9P0S3 153 aa8.98□□□□□ -0.97
CCDC28A-201ENST00000332797 H3BMG7 143 aa8.94□□□□□ -0.98
CCDC28A-201ENST00000332797 H3BQ85 93 aa8.94□□□□□ -0.98
CCDC28A-201ENST00000332797 TPRXLQ17RH7 258 aa8.94□□□□□ -0.98
CCDC28A-201ENST00000332797 UBE2V1Q13404 147 aa8.93□□□□□ -0.98
CCDC28A-201ENST00000332797 TMEM256-PLSCR3K7ERE1 68 aa8.91□□□□□ -0.98
CCDC28A-201ENST00000332797 Q5XG85 94 aa8.91□□□□□ -0.98
CCDC28A-201ENST00000332797 A0A1B0GV72 72 aa8.9□□□□□ -0.98
CCDC28A-201ENST00000332797 TRBV7-7A0A0K0K1E9 115 aa8.89□□□□□ -0.99
CCDC28A-201ENST00000332797 CDIP1Q9H305 208 aa8.89□□□□□ -0.99
CCDC28A-201ENST00000332797 C9JAW5 83 aa8.89□□□□□ -0.99
CCDC28A-201ENST00000332797 F8W1H4 67 aa8.88□□□□□ -0.99
CCDC28A-201ENST00000332797 H3BT86 120 aa8.87□□□□□ -0.99
CCDC28A-201ENST00000332797 KRTAP13-3Q3SY46 172 aa8.87□□□□□ -0.99
CCDC28A-201ENST00000332797 C1orf195Q5TG92 126 aa8.86□□□□□ -0.99
CCDC28A-201ENST00000332797 BAALC-AS2P0C853 105 aa8.85□□□□□ -0.99
CCDC28A-201ENST00000332797 Q6Q795 121 aa8.84□□□□□ -0.99
CCDC28A-201ENST00000332797 TEN1Q86WV5 123 aa8.84□□□□□ -0.99
CCDC28A-201ENST00000332797 PRO0461Q9UI25 63 aa8.84□□□□□ -0.99
CCDC28A-201ENST00000332797 ANKRD29Q8N6D5 301 aa8.83□□□□□ -1
CCDC28A-201ENST00000332797 ASB16-AS1Q495Z4 193 aa8.82□□□□□ -1
CCDC28A-201ENST00000332797 A0A1W2PNM2 257 aa8.81□□□□□ -1
CCDC28A-201ENST00000332797 MTURNQ8N3F0 131 aa8.81□□□□□ -1
CCDC28A-201ENST00000332797 RNF213Q63HN8 5207 aa8.81□□□□□ -1
CCDC28A-201ENST00000332797 A0A087WSZ3 146 aa8.79□□□□□ -1
CCDC28A-201ENST00000332797 SMCPP49901 116 aaPredicted RBP8.79□□□□□ -1
CCDC28A-201ENST00000332797 SS18L2Q9UHA2 77 aa8.79□□□□□ -1
CCDC28A-201ENST00000332797 RBM3P98179 157 aaKnown RBP8.78□□□□□ -1
CCDC28A-201ENST00000332797 C9orf92A6NGG3 77 aa8.77□□□□□ -1
CCDC28A-201ENST00000332797 TRBV7-4A0A0J9YYF1 115 aa8.77□□□□□ -1.01
CCDC28A-201ENST00000332797 CCKP06307 115 aa8.77□□□□□ -1.01
CCDC28A-201ENST00000332797 DSCR8Q96T75 97 aa8.76□□□□□ -1.01
CCDC28A-201ENST00000332797 JMJD7-PLA2G4BH0Y9G9 81 aa8.75□□□□□ -1.01
CCDC28A-201ENST00000332797 VPS25Q9BRG1 176 aa8.75□□□□□ -1.01
CCDC28A-201ENST00000332797 XP32Q5T750 250 aa8.73□□□□□ -1.01
CCDC28A-201ENST00000332797 MUC17Q685J3 4493 aa8.72□□□□□ -1.01
CCDC28A-201ENST00000332797 ETDBQ3ZM63 59 aa8.71□□□□□ -1.01
CCDC28A-201ENST00000332797 OBSCN-AS1Q96MR7 158 aa8.7□□□□□ -1.02
CCDC28A-201ENST00000332797 C21orf62-AS1Q17RA5 79 aa8.68□□□□□ -1.02
CCDC28A-201ENST00000332797 Q96NJ1 140 aa8.68□□□□□ -1.02
CCDC28A-201ENST00000332797 C14orf132Q9NPU4 83 aa8.67□□□□□ -1.02
CCDC28A-201ENST00000332797 LOC110117498A0A087WWA1 95 aa8.66□□□□□ -1.02
CCDC28A-201ENST00000332797 PDE6GP18545 87 aa8.66□□□□□ -1.02
CCDC28A-201ENST00000332797 Q6ZQT0 140 aa8.66□□□□□ -1.02
CCDC28A-201ENST00000332797 SEC61BP60468 96 aaKnown RBP8.65□□□□□ -1.02
CCDC28A-201ENST00000332797 SIGMAR1Q99720 223 aa8.64□□□□□ -1.03
CCDC28A-201ENST00000332797 MUC2Q02817 5179 aa8.63□□□□□ -1.03
CCDC28A-201ENST00000332797 IGKV4-1P06312 121 aa8.62□□□□□ -1.03
CCDC28A-201ENST00000332797 DEFB116Q30KQ4 102 aa8.61□□□□□ -1.03
CCDC28A-201ENST00000332797 LINC00472Q9H8W2 130 aa8.61□□□□□ -1.03
CCDC28A-201ENST00000332797 J3QR89 54 aa8.59□□□□□ -1.03
CCDC28A-201ENST00000332797 A0A1B0GW54 56 aa8.57□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 61.9 ms