RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 A0A087WTM6 91 aa4.62□□□□□ -1.67
LIMCH1-201ENST00000313860 ZZEF1O43149 2961 aa4.61□□□□□ -1.67
LIMCH1-201ENST00000313860 WWC2-AS2Q96NR7 200 aa4.61□□□□□ -1.67
LIMCH1-201ENST00000313860 MGAQ8IWI9 3026 aa4.61□□□□□ -1.67
LIMCH1-201ENST00000313860 TTC28Q96AY4 2481 aa4.61□□□□□ -1.67
LIMCH1-201ENST00000313860 PANO1I0J062 215 aa4.59□□□□□ -1.67
LIMCH1-201ENST00000313860 TACC2O95359 2948 aa4.59□□□□□ -1.68
LIMCH1-201ENST00000313860 MUC3AQ02505 3323 aa4.59□□□□□ -1.68
LIMCH1-201ENST00000313860 SPG11Q96JI7 2443 aa4.56□□□□□ -1.68
LIMCH1-201ENST00000313860 KRTAP4-16G5E9R7 235 aaPredicted RBP4.56□□□□□ -1.68
LIMCH1-201ENST00000313860 SPRR1BP22528 89 aa4.56□□□□□ -1.68
LIMCH1-201ENST00000313860 WDFY4Q6ZS81 3184 aa4.56□□□□□ -1.68
LIMCH1-201ENST00000313860 HIVEP2P31629 2446 aa4.56□□□□□ -1.68
LIMCH1-201ENST00000313860 K7EIL1 84 aa4.55□□□□□ -1.68
LIMCH1-201ENST00000313860 C2CD3Q4AC94 2353 aa4.54□□□□□ -1.68
LIMCH1-201ENST00000313860 A0A1W2PPR1 153 aa4.54□□□□□ -1.68
LIMCH1-201ENST00000313860 DCHS1Q96JQ0 3298 aa4.52□□□□□ -1.69
LIMCH1-201ENST00000313860 DMXL2Q8TDJ6 3036 aa4.52□□□□□ -1.69
LIMCH1-201ENST00000313860 COL27A1Q8IZC6 1860 aaPredicted RBP4.52□□□□□ -1.69
LIMCH1-201ENST00000313860 GIG44P09565 113 aaPredicted RBP4.51□□□□□ -1.69
LIMCH1-201ENST00000313860 KRTAP10-8P60410 259 aa4.51□□□□□ -1.69
LIMCH1-201ENST00000313860 ABCA2Q9BZC7 2435 aa4.51□□□□□ -1.69
LIMCH1-201ENST00000313860 KRTAP11-1Q8IUC1 163 aa4.48□□□□□ -1.69
LIMCH1-201ENST00000313860 ADGRG4Q8IZF6 3080 aa4.48□□□□□ -1.69
LIMCH1-201ENST00000313860 LOC400499M0QZD8 3231 aa4.48□□□□□ -1.69
LIMCH1-201ENST00000313860 KRTAP26-1Q6PEX3 210 aa4.48□□□□□ -1.69
LIMCH1-201ENST00000313860 MYO9AB2RTY4 2548 aa4.47□□□□□ -1.69
LIMCH1-201ENST00000313860 SONP18583 2426 aaKnown RBP4.47□□□□□ -1.69
LIMCH1-201ENST00000313860 NAV2Q8IVL1 2488 aa4.46□□□□□ -1.69
LIMCH1-201ENST00000313860 RIF1Q5UIP0 2472 aaKnown RBP4.46□□□□□ -1.7
LIMCH1-201ENST00000313860 PIEZO2Q9H5I5 2752 aa4.46□□□□□ -1.7
LIMCH1-201ENST00000313860 PTPN13Q12923 2485 aa4.45□□□□□ -1.7
LIMCH1-201ENST00000313860 HIVEP3Q5T1R4 2406 aa4.44□□□□□ -1.7
LIMCH1-201ENST00000313860 CR1P17927 2039 aa4.44□□□□□ -1.7
LIMCH1-201ENST00000313860 PKD1L2Q7Z442 2459 aa4.43□□□□□ -1.7
LIMCH1-201ENST00000313860 SMG1Q96Q15 3661 aaKnown RBP4.43□□□□□ -1.7
LIMCH1-201ENST00000313860 ANKHD1Q8IWZ3 2542 aaKnown RBP4.42□□□□□ -1.7
LIMCH1-201ENST00000313860 BOD1L1Q8NFC6 3051 aa4.42□□□□□ -1.7
LIMCH1-201ENST00000313860 DMDP11532 3685 aa4.42□□□□□ -1.7
LIMCH1-201ENST00000313860 A0A096LNT2 108 aa4.42□□□□□ -1.7
LIMCH1-201ENST00000313860 SPENQ96T58 3664 aaKnown RBP4.42□□□□□ -1.7
LIMCH1-201ENST00000313860 ZFHX4Q86UP3 3567 aa4.41□□□□□ -1.7
LIMCH1-201ENST00000313860 ANKRD17O75179 2603 aaKnown RBP4.41□□□□□ -1.7
LIMCH1-201ENST00000313860 DCHS2Q6V1P9 2916 aa4.4□□□□□ -1.71
LIMCH1-201ENST00000313860 NCOR2Q9Y618 2525 aa4.4□□□□□ -1.71
LIMCH1-201ENST00000313860 CSMD1Q96PZ7 3565 aa4.38□□□□□ -1.71
LIMCH1-201ENST00000313860 AKAP13Q12802 2813 aa4.38□□□□□ -1.71
LIMCH1-201ENST00000313860 LINC00472Q9H8W2 130 aa4.38□□□□□ -1.71
LIMCH1-201ENST00000313860 ACANP16112 2415 aa4.38□□□□□ -1.71
LIMCH1-201ENST00000313860 PIEZO1Q92508 2521 aa4.37□□□□□ -1.71
LIMCH1-201ENST00000313860 ASPMQ8IZT6 3477 aa4.37□□□□□ -1.71
LIMCH1-201ENST00000313860 KRTAP10-11P60412 298 aa4.37□□□□□ -1.71
LIMCH1-201ENST00000313860 ASH1LQ9NR48 2969 aaKnown RBP4.36□□□□□ -1.71
LIMCH1-201ENST00000313860 DMXL1Q9Y485 3027 aa4.36□□□□□ -1.71
LIMCH1-201ENST00000313860 ZFHX2Q9C0A1 2572 aaPredicted RBP4.35□□□□□ -1.71
LIMCH1-201ENST00000313860 LRBAP50851 2863 aa4.34□□□□□ -1.71
LIMCH1-201ENST00000313860 PLAC8Q9NZF1 115 aa4.34□□□□□ -1.71
LIMCH1-201ENST00000313860 ANKRD11Q6UB99 2663 aaPredicted RBP4.34□□□□□ -1.72
LIMCH1-201ENST00000313860 ATMQ13315 3056 aa4.33□□□□□ -1.72
LIMCH1-201ENST00000313860 TLN1Q9Y490 2541 aaKnown RBP4.32□□□□□ -1.72
LIMCH1-201ENST00000313860 FN1P02751 2386 aaKnown RBP4.3□□□□□ -1.72
LIMCH1-201ENST00000313860 SPRR1AP35321 89 aa4.3□□□□□ -1.72
LIMCH1-201ENST00000313860 HRNRQ86YZ3 2850 aaPredicted RBP4.29□□□□□ -1.72
LIMCH1-201ENST00000313860 RELNP78509 3460 aa4.28□□□□□ -1.72
LIMCH1-201ENST00000313860 CCDC168Q8NDH2 2452 aa4.26□□□□□ -1.73
LIMCH1-201ENST00000313860 A0A1B0GVY2 172 aa4.26□□□□□ -1.73
LIMCH1-201ENST00000313860 KRTAP10-3P60369 221 aa4.24□□□□□ -1.73
LIMCH1-201ENST00000313860 LAMA5O15230 3695 aa4.24□□□□□ -1.73
LIMCH1-201ENST00000313860 A0A087X002 238 aa4.23□□□□□ -1.73
LIMCH1-201ENST00000313860 NOTCH2NLQ7Z3S9 236 aa4.23□□□□□ -1.73
LIMCH1-201ENST00000313860 MAP1AP78559 2803 aaPredicted RBP4.23□□□□□ -1.73
LIMCH1-201ENST00000313860 BDP1A6H8Y1 2624 aa4.23□□□□□ -1.73
LIMCH1-201ENST00000313860 SVEP1Q4LDE5 3571 aa4.22□□□□□ -1.73
LIMCH1-201ENST00000313860 CELSR1Q9NYQ6 3014 aa4.22□□□□□ -1.73
LIMCH1-201ENST00000313860 COL12A1Q99715 3063 aa4.21□□□□□ -1.74
LIMCH1-201ENST00000313860 ZFHX3Q15911 3703 aa4.21□□□□□ -1.74
LIMCH1-201ENST00000313860 ACACBO00763 2458 aa4.21□□□□□ -1.74
LIMCH1-201ENST00000313860 ITPR1Q14643 2758 aa4.21□□□□□ -1.74
LIMCH1-201ENST00000313860 KRTAP12-2P59991 146 aa4.2□□□□□ -1.74
LIMCH1-201ENST00000313860 LCE6AA0A183 80 aa4.19□□□□□ -1.74
LIMCH1-201ENST00000313860 NOTCH2Q04721 2471 aa4.19□□□□□ -1.74
LIMCH1-201ENST00000313860 TLN2Q9Y4G6 2542 aa4.19□□□□□ -1.74
LIMCH1-201ENST00000313860 Q6ZRN7 208 aaPredicted RBP4.17□□□□□ -1.74
LIMCH1-201ENST00000313860 JMJD1CQ15652 2540 aa4.17□□□□□ -1.74
LIMCH1-201ENST00000313860 KRTAP29-1A8MX34 341 aaPredicted RBP4.16□□□□□ -1.74
LIMCH1-201ENST00000313860 CRYBG3Q68DQ2 2970 aa4.15□□□□□ -1.75
LIMCH1-201ENST00000313860 APCP25054 2843 aa4.15□□□□□ -1.75
LIMCH1-201ENST00000313860 ZNF292O60281 2723 aa4.15□□□□□ -1.75
LIMCH1-201ENST00000313860 CEP295Q9C0D2 2601 aa4.14□□□□□ -1.75
LIMCH1-201ENST00000313860 MUC6Q6W4X9 2439 aa4.13□□□□□ -1.75
LIMCH1-201ENST00000313860 USP9YO00507 2555 aaPredicted RBP4.13□□□□□ -1.75
LIMCH1-201ENST00000313860 ZFYVE26Q68DK2 2539 aa4.13□□□□□ -1.75
LIMCH1-201ENST00000313860 CACNA1AO00555 2505 aa4.12□□□□□ -1.75
LIMCH1-201ENST00000313860 MYO18BQ8IUG5 2567 aa4.12□□□□□ -1.75
LIMCH1-201ENST00000313860 MXRA5Q9NR99 2828 aa4.11□□□□□ -1.75
LIMCH1-201ENST00000313860 PRO2289Q9P1D8 64 aa4.1□□□□□ -1.75
LIMCH1-201ENST00000313860 CHD6Q8TD26 2715 aa4.1□□□□□ -1.75
LIMCH1-201ENST00000313860 H0YAA0 97 aa4.1□□□□□ -1.75
LIMCH1-201ENST00000313860 USP9XQ93008 2570 aaPredicted RBP4.09□□□□□ -1.75
LIMCH1-201ENST00000313860 CRCT1Q9UGL9 99 aa4.09□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 128.8 ms