RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 MKI67P46013 3256 aaKnown RBP8.17□□□□□ -1.1
LDLR-201ENST00000252444 TEP1Q99973 2627 aaKnown RBP8.17□□□□□ -1.1
LDLR-201ENST00000252444 LAMA3Q16787 3333 aa8.15□□□□□ -1.1
LDLR-201ENST00000252444 CHD6Q8TD26 2715 aa8.15□□□□□ -1.1
LDLR-201ENST00000252444 KRTAP13-1Q8IUC0 172 aa8.14□□□□□ -1.11
LDLR-201ENST00000252444 DSPP15924 2871 aaKnown RBP8.13□□□□□ -1.11
LDLR-201ENST00000252444 A0A0G2JQZ4 141 aa8.12□□□□□ -1.11
LDLR-201ENST00000252444 H7BZZ5 65 aa8.08□□□□□ -1.12
LDLR-201ENST00000252444 ITPR2Q14571 2701 aa8.08□□□□□ -1.12
LDLR-201ENST00000252444 MGAM2Q2M2H8 2515 aa8.07□□□□□ -1.12
LDLR-201ENST00000252444 PANO1I0J062 215 aa8.07□□□□□ -1.12
LDLR-201ENST00000252444 SETXQ7Z333 2677 aaKnown RBP8.06□□□□□ -1.12
LDLR-201ENST00000252444 BRCA2P51587 3418 aa8.06□□□□□ -1.12
LDLR-201ENST00000252444 Q8N1X5 172 aa8.05□□□□□ -1.12
LDLR-201ENST00000252444 TEX15Q9BXT5 2789 aa8.05□□□□□ -1.12
LDLR-201ENST00000252444 PCNTO95613 3336 aa8.04□□□□□ -1.12
LDLR-201ENST00000252444 UQCR11O14957 56 aa8.04□□□□□ -1.12
LDLR-201ENST00000252444 PSPHP1O15172 72 aa8.01□□□□□ -1.13
LDLR-201ENST00000252444 NSD1Q96L73 2696 aaPredicted RBP8□□□□□ -1.13
LDLR-201ENST00000252444 GCN1Q92616 2671 aaKnown RBP8□□□□□ -1.13
LDLR-201ENST00000252444 APCP25054 2843 aa8□□□□□ -1.13
LDLR-201ENST00000252444 KRTAP7-1Q8IUC3 87 aa7.99□□□□□ -1.13
LDLR-201ENST00000252444 COL6A5A8TX70 2615 aa7.99□□□□□ -1.13
LDLR-201ENST00000252444 CENPEQ02224 2701 aa7.97□□□□□ -1.13
LDLR-201ENST00000252444 FLNCQ14315 2725 aa7.97□□□□□ -1.13
LDLR-201ENST00000252444 HIVEP1P15822 2718 aa7.97□□□□□ -1.13
LDLR-201ENST00000252444 Q5W150 140 aa7.96□□□□□ -1.13
LDLR-201ENST00000252444 PRO0628Q9UI54 55 aa7.94□□□□□ -1.14
LDLR-201ENST00000252444 HRES1P13985 223 aa7.94□□□□□ -1.14
LDLR-201ENST00000252444 UTP20O75691 2785 aaKnown RBP7.94□□□□□ -1.14
LDLR-201ENST00000252444 PMAIP1Q13794 54 aa7.93□□□□□ -1.14
LDLR-201ENST00000252444 KRTAP29-1A8MX34 341 aaPredicted RBP7.92□□□□□ -1.14
LDLR-201ENST00000252444 Q75L30 129 aa7.91□□□□□ -1.14
LDLR-201ENST00000252444 A0A087X002 238 aa7.91□□□□□ -1.14
LDLR-201ENST00000252444 CSAG1Q6PB30 78 aa7.9□□□□□ -1.14
LDLR-201ENST00000252444 S4R3F8 94 aa7.89□□□□□ -1.15
LDLR-201ENST00000252444 CDH23Q9H251 3354 aa7.88□□□□□ -1.15
LDLR-201ENST00000252444 EYSQ5T1H1 3165 aa7.87□□□□□ -1.15
LDLR-201ENST00000252444 SPINK7P58062 85 aa7.87□□□□□ -1.15
LDLR-201ENST00000252444 Q1T7F1 81 aa7.87□□□□□ -1.15
LDLR-201ENST00000252444 KRTAP11-1Q8IUC1 163 aa7.87□□□□□ -1.15
LDLR-201ENST00000252444 PRUNE2Q8WUY3 3088 aa7.87□□□□□ -1.15
LDLR-201ENST00000252444 MIR22HGQ0VDD5 57 aa7.86□□□□□ -1.15
LDLR-201ENST00000252444 MAP1AP78559 2803 aaPredicted RBP7.86□□□□□ -1.15
LDLR-201ENST00000252444 TRIOO75962 3097 aa7.86□□□□□ -1.15
LDLR-201ENST00000252444 STAB1Q9NY15 2570 aa7.85□□□□□ -1.15
LDLR-201ENST00000252444 SZT2Q5T011 3432 aa7.85□□□□□ -1.15
LDLR-201ENST00000252444 KRTAP13-2Q52LG2 175 aa7.85□□□□□ -1.15
LDLR-201ENST00000252444 Q8N9P0 234 aaPredicted RBP7.83□□□□□ -1.16
LDLR-201ENST00000252444 DMAC1Q96GE9 116 aa7.82□□□□□ -1.16
LDLR-201ENST00000252444 WDFY4Q6ZS81 3184 aa7.81□□□□□ -1.16
LDLR-201ENST00000252444 LINC01558Q9Y6Z2 57 aa7.8□□□□□ -1.16
LDLR-201ENST00000252444 ITPR1Q14643 2758 aa7.8□□□□□ -1.16
LDLR-201ENST00000252444 HRNRQ86YZ3 2850 aaPredicted RBP7.79□□□□□ -1.16
LDLR-201ENST00000252444 RPL37P61927 97 aaKnown RBP7.78□□□□□ -1.16
LDLR-201ENST00000252444 SPTBN5Q9NRC6 3674 aaKnown RBP7.77□□□□□ -1.17
LDLR-201ENST00000252444 A0A1B0GVY2 172 aa7.76□□□□□ -1.17
LDLR-201ENST00000252444 C4orf26Q17RF5 130 aa7.76□□□□□ -1.17
LDLR-201ENST00000252444 CDC42SE1Q9NRR8 79 aa7.74□□□□□ -1.17
LDLR-201ENST00000252444 REV3LO60673 3130 aa7.73□□□□□ -1.17
LDLR-201ENST00000252444 CFAP54Q96N23 3096 aa7.71□□□□□ -1.17
LDLR-201ENST00000252444 DMXL2Q8TDJ6 3036 aa7.71□□□□□ -1.17
LDLR-201ENST00000252444 A8MUU9 505 aa7.71□□□□□ -1.18
LDLR-201ENST00000252444 C20orf166-AS1Q96NR2 134 aa7.71□□□□□ -1.18
LDLR-201ENST00000252444 KRTAP1-4P0C5Y4 121 aa7.71□□□□□ -1.18
LDLR-201ENST00000252444 A0A1B0GU33 70 aa7.7□□□□□ -1.18
LDLR-201ENST00000252444 PDZD2O15018 2839 aa7.68□□□□□ -1.18
LDLR-201ENST00000252444 UNC80Q8N2C7 3258 aa7.68□□□□□ -1.18
LDLR-201ENST00000252444 M0R2T5 61 aa7.67□□□□□ -1.18
LDLR-201ENST00000252444 NOTCH1P46531 2555 aa7.67□□□□□ -1.18
LDLR-201ENST00000252444 H1FX-AS1Q4G0G2 97 aa7.67□□□□□ -1.18
LDLR-201ENST00000252444 XIRP2A4UGR9 3374 aa7.64□□□□□ -1.19
LDLR-201ENST00000252444 LAMA1P25391 3075 aa7.63□□□□□ -1.19
LDLR-201ENST00000252444 TENM4Q6N022 2769 aa7.63□□□□□ -1.19
LDLR-201ENST00000252444 TPRXLQ17RH7 258 aa7.63□□□□□ -1.19
LDLR-201ENST00000252444 CRIPTQ9P021 101 aa7.63□□□□□ -1.19
LDLR-201ENST00000252444 ATMQ13315 3056 aa7.63□□□□□ -1.19
LDLR-201ENST00000252444 VPS13AQ96RL7 3174 aa7.63□□□□□ -1.19
LDLR-201ENST00000252444 DMXL1Q9Y485 3027 aa7.62□□□□□ -1.19
LDLR-201ENST00000252444 NOTCH2NLQ7Z3S9 236 aa7.62□□□□□ -1.19
LDLR-201ENST00000252444 FRYQ5TBA9 3013 aa7.61□□□□□ -1.19
LDLR-201ENST00000252444 NIPBLQ6KC79 2804 aaeCLIP7.61□□□□□ -1.19
LDLR-201ENST00000252444 FRYLO94915 3013 aa7.61□□□□□ -1.19
LDLR-201ENST00000252444 COL6A3P12111 3177 aa7.61□□□□□ -1.19
LDLR-201ENST00000252444 LRBAP50851 2863 aa7.56□□□□□ -1.2
LDLR-201ENST00000252444 COL12A1Q99715 3063 aa7.55□□□□□ -1.2
LDLR-201ENST00000252444 LAMA2P24043 3122 aaKnown RBP7.55□□□□□ -1.2
LDLR-201ENST00000252444 NBEAQ8NFP9 2946 aa7.55□□□□□ -1.2
LDLR-201ENST00000252444 A0A0C4DFX4 3053 aa7.54□□□□□ -1.2
LDLR-201ENST00000252444 KALRNO60229 2985 aa7.51□□□□□ -1.21
LDLR-201ENST00000252444 R4GN34 69 aa7.51□□□□□ -1.21
LDLR-201ENST00000252444 USP34Q70CQ2 3546 aa7.5□□□□□ -1.21
LDLR-201ENST00000252444 FBN2P35556 2912 aa7.49□□□□□ -1.21
LDLR-201ENST00000252444 KRTAP10-8P60410 259 aa7.48□□□□□ -1.21
LDLR-201ENST00000252444 SPINT4Q6UDR6 99 aa7.48□□□□□ -1.21
LDLR-201ENST00000252444 ASH1LQ9NR48 2969 aaKnown RBP7.48□□□□□ -1.21
LDLR-201ENST00000252444 CAMK2N1Q7Z7J9 78 aa7.47□□□□□ -1.21
LDLR-201ENST00000252444 ADGRG4Q8IZF6 3080 aa7.45□□□□□ -1.22
LDLR-201ENST00000252444 M0QZ58 72 aa7.44□□□□□ -1.22
LDLR-201ENST00000252444 NBEAL1Q6ZS30 2694 aa7.44□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 68.5 ms