RNA–Protein interactions for RNA: ENST00000613788.1

CD48-203, Transcript of CD48 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD48, Length 1,500 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD48-203ENST00000613788 SNHG12Q9BXW3 62 aa9.07□□□□□ -0.96
CD48-203ENST00000613788 PRO1854Q9UHT4 67 aa9.07□□□□□ -0.96
CD48-203ENST00000613788 RPL13AP40429 203 aaKnown RBP9.06□□□□□ -0.96
CD48-203ENST00000613788 A0A1B0GWB2 263 aa9.05□□□□□ -0.96
CD48-203ENST00000613788 ZNF73O43830 326 aaPredicted RBP9.05□□□□□ -0.96
CD48-203ENST00000613788 SPRR1AP35321 89 aa9.05□□□□□ -0.96
CD48-203ENST00000613788 Q5VSD8 79 aa9.05□□□□□ -0.96
CD48-203ENST00000613788 ETDCA0A1B0GVM5 59 aa9.05□□□□□ -0.96
CD48-203ENST00000613788 VPS13BQ7Z7G8 4022 aa9.04□□□□□ -0.96
CD48-203ENST00000613788 IGLV7-43P04211 117 aa9.04□□□□□ -0.96
CD48-203ENST00000613788 FAM19A1Q7Z5A9 133 aa9.04□□□□□ -0.96
CD48-203ENST00000613788 SMIM11BQ8TCY0 68 aa9.04□□□□□ -0.96
CD48-203ENST00000613788 DIRC1Q969H9 104 aa9.04□□□□□ -0.96
CD48-203ENST00000613788 FAT1Q14517 4588 aa9.03□□□□□ -0.96
CD48-203ENST00000613788 A0A1B0GV90 55 aa9.03□□□□□ -0.96
CD48-203ENST00000613788 H7C2G1 150 aa9.03□□□□□ -0.96
CD48-203ENST00000613788 UBE2AP49459 152 aa9.03□□□□□ -0.96
CD48-203ENST00000613788 KRTAP4-16G5E9R7 235 aaPredicted RBP9.02□□□□□ -0.97
CD48-203ENST00000613788 C6orf99Q4VX62 202 aa9.02□□□□□ -0.97
CD48-203ENST00000613788 K7ERJ3 54 aa9.01□□□□□ -0.97
CD48-203ENST00000613788 RPL28P46779 137 aaKnown RBP9.01□□□□□ -0.97
CD48-203ENST00000613788 BATFQ16520 125 aa9.01□□□□□ -0.97
CD48-203ENST00000613788 Q1RN00 199 aa9.01□□□□□ -0.97
CD48-203ENST00000613788 TRBV7-6A0A0J9YX20 115 aa9□□□□□ -0.97
CD48-203ENST00000613788 H0Y9J4 135 aa9□□□□□ -0.97
CD48-203ENST00000613788 ZNF861PO60384 105 aa9□□□□□ -0.97
CD48-203ENST00000613788 KRTAP10-4P60372 401 aaPredicted RBP9□□□□□ -0.97
CD48-203ENST00000613788 VAMP3Q15836 100 aa9□□□□□ -0.97
CD48-203ENST00000613788 B5MCH6 92 aa9□□□□□ -0.97
CD48-203ENST00000613788 COX7BP24311 80 aa8.99□□□□□ -0.97
CD48-203ENST00000613788 PRLHP81277 87 aa8.99□□□□□ -0.97
CD48-203ENST00000613788 KRTAP17-1Q9BYP8 105 aa8.99□□□□□ -0.97
CD48-203ENST00000613788 Q6ZRX8 168 aa8.98□□□□□ -0.97
CD48-203ENST00000613788 KRTAP13-1Q8IUC0 172 aa8.98□□□□□ -0.97
CD48-203ENST00000613788 ELOF1P60002 83 aaKnown RBP8.97□□□□□ -0.97
CD48-203ENST00000613788 SPINK6Q6UWN8 80 aa8.97□□□□□ -0.97
CD48-203ENST00000613788 TSPAN13O95857 204 aa8.95□□□□□ -0.98
CD48-203ENST00000613788 PSMB2P49721 201 aa8.95□□□□□ -0.98
CD48-203ENST00000613788 HERC2O95714 4834 aa8.95□□□□□ -0.98
CD48-203ENST00000613788 INAFM2P0DMQ5 153 aa8.95□□□□□ -0.98
CD48-203ENST00000613788 COL5A1-AS1Q5SY13 56 aa8.95□□□□□ -0.98
CD48-203ENST00000613788 HIGD2AQ9BW72 106 aa8.95□□□□□ -0.98
CD48-203ENST00000613788 DHRS4-AS1Q9P1J3 65 aa8.95□□□□□ -0.98
CD48-203ENST00000613788 H0YGX0 51 aa8.94□□□□□ -0.98
CD48-203ENST00000613788 COX6CP09669 75 aa8.94□□□□□ -0.98
CD48-203ENST00000613788 Q9BRP9 147 aa8.93□□□□□ -0.98
CD48-203ENST00000613788 TRIAP1O43715 76 aa8.92□□□□□ -0.98
CD48-203ENST00000613788 SLC25A20O43772 301 aa8.92□□□□□ -0.98
CD48-203ENST00000613788 SMCR5Q8TEV8 140 aa8.92□□□□□ -0.98
CD48-203ENST00000613788 SNCGO76070 127 aa8.9□□□□□ -0.98
CD48-203ENST00000613788 LINC00575Q6W349 94 aa8.9□□□□□ -0.98
CD48-203ENST00000613788 SRRM2Q9UQ35 2752 aaKnown RBP8.9□□□□□ -0.98
CD48-203ENST00000613788 SCGB1C2P0DMR2 95 aa8.9□□□□□ -0.99
CD48-203ENST00000613788 KRTAP4-5Q9BYR2 181 aa8.89□□□□□ -0.99
CD48-203ENST00000613788 hADV29S1A0JD25 119 aa8.88□□□□□ -0.99
CD48-203ENST00000613788 ERC2-IT1O76042 136 aa8.88□□□□□ -0.99
CD48-203ENST00000613788 ZNF706Q9Y5V0 76 aaPredicted RBP8.88□□□□□ -0.99
CD48-203ENST00000613788 TAX1BP3O14907 124 aa8.86□□□□□ -0.99
CD48-203ENST00000613788 A0A1B0GX51 115 aa8.85□□□□□ -0.99
CD48-203ENST00000613788 C9orf118A6NHY6 69 aa8.85□□□□□ -0.99
CD48-203ENST00000613788 NAA38Q9BRA0 125 aaKnown RBP8.85□□□□□ -0.99
CD48-203ENST00000613788 PKHD1L1Q86WI1 4243 aa8.85□□□□□ -0.99
CD48-203ENST00000613788 H3BUT2 72 aa8.85□□□□□ -0.99
CD48-203ENST00000613788 LYRM7Q5U5X0 104 aa8.85□□□□□ -0.99
CD48-203ENST00000613788 CLEC2BQ92478 149 aa8.84□□□□□ -0.99
CD48-203ENST00000613788 FAM218AQ96MZ4 157 aa8.84□□□□□ -0.99
CD48-203ENST00000613788 SPRR4Q96PI1 79 aa8.84□□□□□ -0.99
CD48-203ENST00000613788 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP8.82□□□□□ -1
CD48-203ENST00000613788 ST20-AS1Q8NBB2 130 aa8.82□□□□□ -1
CD48-203ENST00000613788 GAGE2AQ6NT46 116 aa8.81□□□□□ -1
CD48-203ENST00000613788 Q6ZQY7 126 aa8.8□□□□□ -1
CD48-203ENST00000613788 A0A1W2PPM0 123 aa8.8□□□□□ -1
CD48-203ENST00000613788 DNAL4O96015 105 aa8.8□□□□□ -1
CD48-203ENST00000613788 KRTAP1-4P0C5Y4 121 aa8.8□□□□□ -1
CD48-203ENST00000613788 DEFB105AQ8NG35 78 aa8.8□□□□□ -1
CD48-203ENST00000613788 TRBV20-1A0A075B6N2 111 aa8.79□□□□□ -1
CD48-203ENST00000613788 TEX49A0A1B0GTD5 131 aa8.79□□□□□ -1
CD48-203ENST00000613788 LST1O00453 97 aa8.79□□□□□ -1
CD48-203ENST00000613788 GHRHP01286 108 aa8.79□□□□□ -1
CD48-203ENST00000613788 FABP2P12104 132 aa8.79□□□□□ -1
CD48-203ENST00000613788 LINC00483Q53H64 154 aa8.79□□□□□ -1
CD48-203ENST00000613788 OCIAD2Q56VL3 154 aa8.79□□□□□ -1
CD48-203ENST00000613788 IGLV5-48A0A075B6I7 105 aa8.78□□□□□ -1
CD48-203ENST00000613788 TRACP01848 142 aa8.78□□□□□ -1
CD48-203ENST00000613788 ATXN8Q156A1 80 aa8.78□□□□□ -1
CD48-203ENST00000613788 FAM229BQ4G0N7 80 aa8.78□□□□□ -1
CD48-203ENST00000613788 ANAPC11Q9NYG5 84 aa8.78□□□□□ -1
CD48-203ENST00000613788 TCL1BO95988 128 aa8.77□□□□□ -1.01
CD48-203ENST00000613788 SPRR1BP22528 89 aa8.77□□□□□ -1.01
CD48-203ENST00000613788 CRYGAP11844 174 aa8.76□□□□□ -1.01
CD48-203ENST00000613788 LINC01600Q96MT4 127 aa8.76□□□□□ -1.01
CD48-203ENST00000613788 OXTP01178 125 aa8.75□□□□□ -1.01
CD48-203ENST00000613788 LINC01547P58512 204 aaPredicted RBP8.75□□□□□ -1.01
CD48-203ENST00000613788 PPDPFLQ8WWR9 84 aa8.75□□□□□ -1.01
CD48-203ENST00000613788 ABCA13Q86UQ4 5058 aa8.75□□□□□ -1.01
CD48-203ENST00000613788 H3BQ85 93 aa8.75□□□□□ -1.01
CD48-203ENST00000613788 UBE2V1Q13404 147 aa8.75□□□□□ -1.01
CD48-203ENST00000613788 Q8N377 158 aa8.75□□□□□ -1.01
CD48-203ENST00000613788 ORMDL1Q9P0S3 153 aa8.74□□□□□ -1.01
CD48-203ENST00000613788 LAMTOR3Q9UHA4 124 aa8.74□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms