RNA–Protein interactions for RNA: ENST00000555953.1

SCFD1-217, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 497 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-217ENST00000555953 DEFB135Q30KP9 77 aa-0.2□□□□□ -2.44
SCFD1-217ENST00000555953 CDKN2A-AS1Q9UH64 79 aa-0.2□□□□□ -2.44
SCFD1-217ENST00000555953 PREX1Q8TCU6 1659 aa-0.21□□□□□ -2.44
SCFD1-217ENST00000555953 UACAQ9BZF9 1416 aa-0.21□□□□□ -2.44
SCFD1-217ENST00000555953 QSER1Q2KHR3 1735 aa-0.21□□□□□ -2.44
SCFD1-217ENST00000555953 AKAP13Q12802 2813 aa-0.21□□□□□ -2.44
SCFD1-217ENST00000555953 PKHD1P08F94 4074 aa-0.21□□□□□ -2.44
SCFD1-217ENST00000555953 H3BUT2 72 aa-0.21□□□□□ -2.44
SCFD1-217ENST00000555953 CCL22O00626 93 aa-0.21□□□□□ -2.44
SCFD1-217ENST00000555953 TENM2Q9NT68 2774 aa-0.21□□□□□ -2.44
SCFD1-217ENST00000555953 SVEP1Q4LDE5 3571 aa-0.21□□□□□ -2.44
SCFD1-217ENST00000555953 POLR1AO95602 1720 aaPredicted RBP-0.21□□□□□ -2.44
SCFD1-217ENST00000555953 LRRC9Q6ZRR7 1453 aa-0.22□□□□□ -2.44
SCFD1-217ENST00000555953 DEFA5Q01523 94 aa-0.22□□□□□ -2.44
SCFD1-217ENST00000555953 ST20Q9HBF5 79 aa-0.22□□□□□ -2.44
SCFD1-217ENST00000555953 MAP1BP46821 2468 aaKnown RBP-0.22□□□□□ -2.44
SCFD1-217ENST00000555953 SUPT6HQ7KZ85 1726 aaKnown RBP-0.22□□□□□ -2.44
SCFD1-217ENST00000555953 CHD8Q9HCK8 2581 aa-0.22□□□□□ -2.45
SCFD1-217ENST00000555953 ERVK-7P63135 1459 aa-0.22□□□□□ -2.45
SCFD1-217ENST00000555953 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP-0.23□□□□□ -2.45
SCFD1-217ENST00000555953 BCORQ6W2J9 1755 aa-0.23□□□□□ -2.45
SCFD1-217ENST00000555953 KRTAP6-1Q3LI64 71 aa-0.23□□□□□ -2.45
SCFD1-217ENST00000555953 BVES-AS1Q5T3Y7 98 aa-0.23□□□□□ -2.45
SCFD1-217ENST00000555953 MAP3K4Q9Y6R4 1608 aa-0.24□□□□□ -2.45
SCFD1-217ENST00000555953 KIF20BQ96Q89 1820 aa-0.24□□□□□ -2.45
SCFD1-217ENST00000555953 MAP1AP78559 2803 aaPredicted RBP-0.24□□□□□ -2.45
SCFD1-217ENST00000555953 ACYP1P07311 99 aa-0.24□□□□□ -2.45
SCFD1-217ENST00000555953 HMGA1P17096 107 aaKnown RBP-0.24□□□□□ -2.45
SCFD1-217ENST00000555953 FLGP20930 4061 aaPredicted RBP-0.24□□□□□ -2.45
SCFD1-217ENST00000555953 WNK1Q9H4A3 2382 aa-0.24□□□□□ -2.45
SCFD1-217ENST00000555953 RB1CC1Q8TDY2 1594 aa-0.24□□□□□ -2.45
SCFD1-217ENST00000555953 PIK3C2BO00750 1634 aa-0.24□□□□□ -2.45
SCFD1-217ENST00000555953 SCN11AQ9UI33 1791 aa-0.24□□□□□ -2.45
SCFD1-217ENST00000555953 KANTRA0A1W2PQU2 76 aa-0.25□□□□□ -2.45
SCFD1-217ENST00000555953 H0YAA0 97 aa-0.25□□□□□ -2.45
SCFD1-217ENST00000555953 SMIM13P0DJ93 91 aa-0.25□□□□□ -2.45
SCFD1-217ENST00000555953 ADIRFQ15847 76 aa-0.25□□□□□ -2.45
SCFD1-217ENST00000555953 KRTAP19-7Q3SYF9 63 aa-0.25□□□□□ -2.45
SCFD1-217ENST00000555953 DEFB121Q5J5C9 76 aa-0.25□□□□□ -2.45
SCFD1-217ENST00000555953 ARHGAP35Q9NRY4 1499 aa-0.25□□□□□ -2.45
SCFD1-217ENST00000555953 ADAMTS12P58397 1594 aa-0.25□□□□□ -2.45
SCFD1-217ENST00000555953 CICQ96RK0 1608 aaPredicted RBP-0.25□□□□□ -2.45
SCFD1-217ENST00000555953 TNRC6CQ9HCJ0 1690 aaKnown RBP-0.25□□□□□ -2.45
SCFD1-217ENST00000555953 C4AP0C0L4 1744 aa-0.25□□□□□ -2.45
SCFD1-217ENST00000555953 C4BP0C0L5 1744 aa-0.25□□□□□ -2.45
SCFD1-217ENST00000555953 PPLO60437 1756 aa-0.25□□□□□ -2.45
SCFD1-217ENST00000555953 COL14A1Q05707 1796 aaKnown RBP-0.25□□□□□ -2.45
SCFD1-217ENST00000555953 NWD1Q149M9 1564 aa-0.26□□□□□ -2.45
SCFD1-217ENST00000555953 URB2Q14146 1524 aaKnown RBP-0.26□□□□□ -2.45
SCFD1-217ENST00000555953 CCDC18Q5T9S5 1454 aa-0.26□□□□□ -2.45
SCFD1-217ENST00000555953 PKD1P98161 4303 aa-0.26□□□□□ -2.45
SCFD1-217ENST00000555953 UMAD1C9J7I0 102 aa-0.26□□□□□ -2.45
SCFD1-217ENST00000555953 NREPQ16612 68 aa-0.26□□□□□ -2.45
SCFD1-217ENST00000555953 S100A13Q99584 98 aa-0.26□□□□□ -2.45
SCFD1-217ENST00000555953 TRANK1O15050 2925 aa-0.26□□□□□ -2.45
SCFD1-217ENST00000555953 UBR3Q6ZT12 1888 aa-0.27□□□□□ -2.45
SCFD1-217ENST00000555953 ZANQ9Y493 2812 aa-0.27□□□□□ -2.45
SCFD1-217ENST00000555953 ACANP16112 2415 aa-0.27□□□□□ -2.45
SCFD1-217ENST00000555953 APC2O95996 2303 aa-0.27□□□□□ -2.45
SCFD1-217ENST00000555953 LCE6AA0A183 80 aa-0.27□□□□□ -2.45
SCFD1-217ENST00000555953 TNRC18O15417 2968 aaPredicted RBP-0.27□□□□□ -2.45
SCFD1-217ENST00000555953 FLNBO75369 2602 aaKnown RBP-0.27□□□□□ -2.45
SCFD1-217ENST00000555953 PTPN23Q9H3S7 1636 aa-0.27□□□□□ -2.45
SCFD1-217ENST00000555953 MACF1Q9UPN3 7388 aaKnown RBP-0.27□□□□□ -2.45
SCFD1-217ENST00000555953 DCAF1Q9Y4B6 1507 aa-0.28□□□□□ -2.45
SCFD1-217ENST00000555953 NDUFA4O00483 81 aa-0.28□□□□□ -2.45
SCFD1-217ENST00000555953 LINC00158P58513 81 aa-0.28□□□□□ -2.45
SCFD1-217ENST00000555953 RPL38P63173 70 aaKnown RBP-0.28□□□□□ -2.45
SCFD1-217ENST00000555953 SRRM2Q9UQ35 2752 aaKnown RBP-0.28□□□□□ -2.45
SCFD1-217ENST00000555953 PRRC2CQ9Y520 2896 aaKnown RBP-0.28□□□□□ -2.45
SCFD1-217ENST00000555953 MUC12Q9UKN1 5478 aa-0.28□□□□□ -2.45
SCFD1-217ENST00000555953 MAGI3Q5TCQ9 1506 aa-0.28□□□□□ -2.45
SCFD1-217ENST00000555953 PCNX1Q96RV3 2341 aa-0.29□□□□□ -2.46
SCFD1-217ENST00000555953 LYSTQ99698 3801 aa-0.29□□□□□ -2.46
SCFD1-217ENST00000555953 LTN1O94822 1766 aa-0.29□□□□□ -2.46
SCFD1-217ENST00000555953 A0A087WXM4 84 aa-0.29□□□□□ -2.46
SCFD1-217ENST00000555953 NDUFB1O75438 58 aa-0.29□□□□□ -2.46
SCFD1-217ENST00000555953 COX6B2Q6YFQ2 88 aa-0.29□□□□□ -2.46
SCFD1-217ENST00000555953 PRO3102Q9H379 93 aa-0.29□□□□□ -2.46
SCFD1-217ENST00000555953 KNL1Q8NG31 2342 aa-0.29□□□□□ -2.46
SCFD1-217ENST00000555953 KDM5DQ9BY66 1539 aa-0.29□□□□□ -2.46
SCFD1-217ENST00000555953 CD163L1Q9NR16 1453 aa-0.29□□□□□ -2.46
SCFD1-217ENST00000555953 ARFGEF2Q9Y6D5 1785 aa-0.29□□□□□ -2.46
SCFD1-217ENST00000555953 NESP48681 1621 aa-0.3□□□□□ -2.46
SCFD1-217ENST00000555953 SPRR2AP35326 72 aa-0.3□□□□□ -2.46
SCFD1-217ENST00000555953 IFI27P40305 119 aaPredicted RBP-0.3□□□□□ -2.46
SCFD1-217ENST00000555953 C18orf32Q8TCD1 76 aa-0.3□□□□□ -2.46
SCFD1-217ENST00000555953 RICTORQ6R327 1708 aa-0.31□□□□□ -2.46
SCFD1-217ENST00000555953 DNAH9Q9NYC9 4486 aa-0.31□□□□□ -2.46
SCFD1-217ENST00000555953 CNOT1A5YKK6 2376 aaKnown RBP-0.31□□□□□ -2.46
SCFD1-217ENST00000555953 PDZD2O15018 2839 aa-0.31□□□□□ -2.46
SCFD1-217ENST00000555953 SETD2Q9BYW2 2564 aaPredicted RBP-0.31□□□□□ -2.46
SCFD1-217ENST00000555953 CUBNO60494 3623 aa-0.31□□□□□ -2.46
SCFD1-217ENST00000555953 RGPD8O14715 1765 aaPredicted RBP-0.32□□□□□ -2.46
SCFD1-217ENST00000555953 RGPD5Q99666 1765 aa-0.32□□□□□ -2.46
SCFD1-217ENST00000555953 FAT3Q8TDW7 4589 aa-0.32□□□□□ -2.46
SCFD1-217ENST00000555953 WIZO95785 1651 aa-0.32□□□□□ -2.46
SCFD1-217ENST00000555953 PLCH1Q4KWH8 1693 aa-0.32□□□□□ -2.46
SCFD1-217ENST00000555953 DEFB130BP0DP73 79 aa-0.32□□□□□ -2.46
SCFD1-217ENST00000555953 DEFB130AP0DP74 79 aa-0.32□□□□□ -2.46
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms