RNA–Protein interactions for RNA: ENST00000553280.1

SCFD1-209, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 574 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-209ENST00000553280 TDRG1Q3Y452 100 aa-0.25□□□□□ -2.45
SCFD1-209ENST00000553280 USP32Q8NFA0 1604 aa-0.25□□□□□ -2.45
SCFD1-209ENST00000553280 SUPT6HQ7KZ85 1726 aaKnown RBP-0.25□□□□□ -2.45
SCFD1-209ENST00000553280 HECTD4Q9Y4D8 3996 aa-0.26□□□□□ -2.45
SCFD1-209ENST00000553280 UBR3Q6ZT12 1888 aa-0.26□□□□□ -2.45
SCFD1-209ENST00000553280 TRAV21A0A0B4J279 112 aa-0.26□□□□□ -2.45
SCFD1-209ENST00000553280 DEFB135Q30KP9 77 aa-0.27□□□□□ -2.45
SCFD1-209ENST00000553280 COX6B2Q6YFQ2 88 aa-0.28□□□□□ -2.45
SCFD1-209ENST00000553280 WFDC13Q8IUB5 93 aa-0.28□□□□□ -2.45
SCFD1-209ENST00000553280 COL6A3P12111 3177 aa-0.28□□□□□ -2.45
SCFD1-209ENST00000553280 MED14O60244 1454 aa-0.29□□□□□ -2.46
SCFD1-209ENST00000553280 RGPD8O14715 1765 aaPredicted RBP-0.29□□□□□ -2.46
SCFD1-209ENST00000553280 RGPD5Q99666 1765 aa-0.29□□□□□ -2.46
SCFD1-209ENST00000553280 ACANP16112 2415 aa-0.29□□□□□ -2.46
SCFD1-209ENST00000553280 WFDC9Q8NEX5 89 aa-0.29□□□□□ -2.46
SCFD1-209ENST00000553280 POLR1AO95602 1720 aaPredicted RBP-0.3□□□□□ -2.46
SCFD1-209ENST00000553280 STAB1Q9NY15 2570 aa-0.3□□□□□ -2.46
SCFD1-209ENST00000553280 CEP170BQ9Y4F5 1589 aaPredicted RBP-0.3□□□□□ -2.46
SCFD1-209ENST00000553280 URB2Q14146 1524 aaKnown RBP-0.3□□□□□ -2.46
SCFD1-209ENST00000553280 FLNBO75369 2602 aaKnown RBP-0.3□□□□□ -2.46
SCFD1-209ENST00000553280 TENM2Q9NT68 2774 aa-0.31□□□□□ -2.46
SCFD1-209ENST00000553280 KANTRA0A1W2PQU2 76 aa-0.31□□□□□ -2.46
SCFD1-209ENST00000553280 NDUFB1O75438 58 aa-0.31□□□□□ -2.46
SCFD1-209ENST00000553280 REV3LO60673 3130 aa-0.31□□□□□ -2.46
SCFD1-209ENST00000553280 ZANQ9Y493 2812 aa-0.32□□□□□ -2.46
SCFD1-209ENST00000553280 TIAM2Q8IVF5 1701 aa-0.33□□□□□ -2.46
SCFD1-209ENST00000553280 MUC12Q9UKN1 5478 aa-0.33□□□□□ -2.46
SCFD1-209ENST00000553280 MUC2Q02817 5179 aa-0.33□□□□□ -2.46
SCFD1-209ENST00000553280 NCOA2Q15596 1464 aa-0.34□□□□□ -2.46
SCFD1-209ENST00000553280 MAGI3Q5TCQ9 1506 aa-0.34□□□□□ -2.46
SCFD1-209ENST00000553280 LTN1O94822 1766 aa-0.34□□□□□ -2.46
SCFD1-209ENST00000553280 ZNF831Q5JPB2 1677 aa-0.35□□□□□ -2.47
SCFD1-209ENST00000553280 TNRC6CQ9HCJ0 1690 aaKnown RBP-0.35□□□□□ -2.47
SCFD1-209ENST00000553280 PCNX1Q96RV3 2341 aa-0.36□□□□□ -2.47
SCFD1-209ENST00000553280 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP-0.36□□□□□ -2.47
SCFD1-209ENST00000553280 CNOT1A5YKK6 2376 aaKnown RBP-0.37□□□□□ -2.47
SCFD1-209ENST00000553280 NDUFA3O95167 84 aa-0.37□□□□□ -2.47
SCFD1-209ENST00000553280 DSTQ03001 7570 aaKnown RBP-0.37□□□□□ -2.47
SCFD1-209ENST00000553280 NWD1Q149M9 1564 aa-0.37□□□□□ -2.47
SCFD1-209ENST00000553280 KNL1Q8NG31 2342 aa-0.37□□□□□ -2.47
SCFD1-209ENST00000553280 CICQ96RK0 1608 aaPredicted RBP-0.38□□□□□ -2.47
SCFD1-209ENST00000553280 PTPN23Q9H3S7 1636 aa-0.38□□□□□ -2.47
SCFD1-209ENST00000553280 ST20Q9HBF5 79 aa-0.38□□□□□ -2.47
SCFD1-209ENST00000553280 CCDC18Q5T9S5 1454 aa-0.38□□□□□ -2.47
SCFD1-209ENST00000553280 ADAMTS12P58397 1594 aa-0.38□□□□□ -2.47
SCFD1-209ENST00000553280 DOT1LQ8TEK3 1739 aa-0.38□□□□□ -2.47
SCFD1-209ENST00000553280 PIK3C2BO00750 1634 aa-0.38□□□□□ -2.47
SCFD1-209ENST00000553280 LRP1BQ9NZR2 4599 aa-0.38□□□□□ -2.47
SCFD1-209ENST00000553280 DIP2BQ9P265 1576 aa-0.39□□□□□ -2.47
SCFD1-209ENST00000553280 S100A13Q99584 98 aa-0.4□□□□□ -2.47
SCFD1-209ENST00000553280 SRRM2Q9UQ35 2752 aaKnown RBP-0.4□□□□□ -2.47
SCFD1-209ENST00000553280 ADIRFQ15847 76 aa-0.41□□□□□ -2.48
SCFD1-209ENST00000553280 ATP5EP2Q5VTU8 51 aa-0.41□□□□□ -2.48
SCFD1-209ENST00000553280 C4AP0C0L4 1744 aa-0.41□□□□□ -2.48
SCFD1-209ENST00000553280 C4BP0C0L5 1744 aa-0.41□□□□□ -2.48
SCFD1-209ENST00000553280 CCDC88BA6NC98 1476 aa-0.41□□□□□ -2.48
SCFD1-209ENST00000553280 NESP48681 1621 aa-0.42□□□□□ -2.48
SCFD1-209ENST00000553280 DCAF1Q9Y4B6 1507 aa-0.42□□□□□ -2.48
SCFD1-209ENST00000553280 KRTAP19-7Q3SYF9 63 aa-0.42□□□□□ -2.48
SCFD1-209ENST00000553280 UMAD1C9J7I0 102 aa-0.44□□□□□ -2.48
SCFD1-209ENST00000553280 ERVK-7P63135 1459 aa-0.44□□□□□ -2.48
SCFD1-209ENST00000553280 TRANK1O15050 2925 aa-0.45□□□□□ -2.48
SCFD1-209ENST00000553280 ARFGEF2Q9Y6D5 1785 aa-0.46□□□□□ -2.48
SCFD1-209ENST00000553280 KDM5DQ9BY66 1539 aa-0.46□□□□□ -2.48
SCFD1-209ENST00000553280 IFI6P09912 130 aa-0.46□□□□□ -2.48
SCFD1-209ENST00000553280 IFI27P40305 119 aaPredicted RBP-0.46□□□□□ -2.48
SCFD1-209ENST00000553280 DEFB121Q5J5C9 76 aa-0.46□□□□□ -2.48
SCFD1-209ENST00000553280 PDZD2O15018 2839 aa-0.46□□□□□ -2.48
SCFD1-209ENST00000553280 MAP1AP78559 2803 aaPredicted RBP-0.46□□□□□ -2.48
SCFD1-209ENST00000553280 HERC1Q15751 4861 aa-0.47□□□□□ -2.48
SCFD1-209ENST00000553280 SPRR2AP35326 72 aa-0.47□□□□□ -2.48
SCFD1-209ENST00000553280 AKAP13Q12802 2813 aa-0.48□□□□□ -2.49
SCFD1-209ENST00000553280 ARHGAP35Q9NRY4 1499 aa-0.48□□□□□ -2.49
SCFD1-209ENST00000553280 PLXNC1O60486 1568 aa-0.49□□□□□ -2.49
SCFD1-209ENST00000553280 LCE6AA0A183 80 aa-0.49□□□□□ -2.49
SCFD1-209ENST00000553280 H3BUT2 72 aa-0.49□□□□□ -2.49
SCFD1-209ENST00000553280 C3orf79P0CE67 100 aa-0.49□□□□□ -2.49
SCFD1-209ENST00000553280 PRO3102Q9H379 93 aa-0.49□□□□□ -2.49
SCFD1-209ENST00000553280 ABCC1P33527 1531 aa-0.49□□□□□ -2.49
SCFD1-209ENST00000553280 H0YGG7 62 aa-0.5□□□□□ -2.49
SCFD1-209ENST00000553280 PKHD1P08F94 4074 aa-0.5□□□□□ -2.49
SCFD1-209ENST00000553280 STAB2Q8WWQ8 2551 aa-0.51□□□□□ -2.49
SCFD1-209ENST00000553280 KMT2CQ8NEZ4 4911 aaKnown RBP-0.51□□□□□ -2.49
SCFD1-209ENST00000553280 WIZO95785 1651 aa-0.51□□□□□ -2.49
SCFD1-209ENST00000553280 KRTAP6-2Q3LI66 62 aa-0.51□□□□□ -2.49
SCFD1-209ENST00000553280 CFAP74Q9C0B2 1584 aa-0.51□□□□□ -2.49
SCFD1-209ENST00000553280 CREBBPQ92793 2442 aa-0.52□□□□□ -2.49
SCFD1-209ENST00000553280 PDE4DIPQ5VU43 2346 aa-0.52□□□□□ -2.49
SCFD1-209ENST00000553280 NREPQ16612 68 aa-0.52□□□□□ -2.49
SCFD1-209ENST00000553280 BVES-AS1Q5T3Y7 98 aa-0.52□□□□□ -2.49
SCFD1-209ENST00000553280 HECTD1Q9ULT8 2610 aa-0.53□□□□□ -2.49
SCFD1-209ENST00000553280 LINC00158P58513 81 aa-0.53□□□□□ -2.49
SCFD1-209ENST00000553280 NBEAL1Q6ZS30 2694 aa-0.54□□□□□ -2.5
SCFD1-209ENST00000553280 SETD2Q9BYW2 2564 aaPredicted RBP-0.54□□□□□ -2.5
SCFD1-209ENST00000553280 A0A087WXM4 84 aa-0.54□□□□□ -2.5
SCFD1-209ENST00000553280 NDUFA4O00483 81 aa-0.54□□□□□ -2.5
SCFD1-209ENST00000553280 KRTAP19-8Q3LI54 63 aa-0.54□□□□□ -2.5
SCFD1-209ENST00000553280 FAT1Q14517 4588 aa-0.54□□□□□ -2.5
SCFD1-209ENST00000553280 CFAP43Q8NDM7 1665 aa-0.55□□□□□ -2.5
SCFD1-209ENST00000553280 SMIM13P0DJ93 91 aa-0.55□□□□□ -2.5
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms