RNA–Protein interactions for RNA: ENST00000496826.1

USF3-204, Transcript of upstream transcription factor family member 3, humanhuman

TSL 1 (best)

Gene USF3, Length 8,397 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-204ENST00000496826 SPRNQ5BIV9 151 aa3.93□□□□□ -1.78
USF3-204ENST00000496826 SPATA8Q6RVD6 105 aa3.93□□□□□ -1.78
USF3-204ENST00000496826 Q75L30 129 aa3.93□□□□□ -1.78
USF3-204ENST00000496826 Q8N9P0 234 aaPredicted RBP3.92□□□□□ -1.78
USF3-204ENST00000496826 PCSK5Q92824 1860 aa3.92□□□□□ -1.78
USF3-204ENST00000496826 PP632Q6XCG6 107 aa3.92□□□□□ -1.78
USF3-204ENST00000496826 BDP1A6H8Y1 2624 aa3.92□□□□□ -1.78
USF3-204ENST00000496826 DNAH10OSP0CZ25 163 aa3.91□□□□□ -1.78
USF3-204ENST00000496826 Q6ZS46 218 aa3.9□□□□□ -1.78
USF3-204ENST00000496826 RPL37P61927 97 aaKnown RBP3.9□□□□□ -1.79
USF3-204ENST00000496826 COL18A1P39060 1754 aa3.9□□□□□ -1.79
USF3-204ENST00000496826 DSCR10P59022 87 aa3.9□□□□□ -1.79
USF3-204ENST00000496826 CPAMD8Q8IZJ3 1885 aa3.9□□□□□ -1.79
USF3-204ENST00000496826 DMBT1Q9UGM3 2413 aaPredicted RBP3.89□□□□□ -1.79
USF3-204ENST00000496826 LTBP2Q14767 1821 aa3.89□□□□□ -1.79
USF3-204ENST00000496826 LINC00315P59091 139 aa3.89□□□□□ -1.79
USF3-204ENST00000496826 PRR3P79522 188 aaKnown RBP3.89□□□□□ -1.79
USF3-204ENST00000496826 OXTP01178 125 aa3.88□□□□□ -1.79
USF3-204ENST00000496826 KCNQ1DNQ9H478 68 aa3.88□□□□□ -1.79
USF3-204ENST00000496826 A8MTW9 85 aa3.88□□□□□ -1.79
USF3-204ENST00000496826 ADAMTSL4-AS1Q5T5F5 129 aa3.88□□□□□ -1.79
USF3-204ENST00000496826 FAM218AQ96MZ4 157 aa3.88□□□□□ -1.79
USF3-204ENST00000496826 PHF5AQ7RTV0 110 aaKnown RBP3.88□□□□□ -1.79
USF3-204ENST00000496826 LINC01558Q9Y6Z2 57 aa3.87□□□□□ -1.79
USF3-204ENST00000496826 IGFL1Q6UW32 110 aa3.87□□□□□ -1.79
USF3-204ENST00000496826 COL11A2P13942 1736 aaPredicted RBP3.87□□□□□ -1.79
USF3-204ENST00000496826 C9orf92A6NGG3 77 aa3.87□□□□□ -1.79
USF3-204ENST00000496826 LTBP1Q14766 1721 aa3.87□□□□□ -1.79
USF3-204ENST00000496826 COL4A6Q14031 1691 aa3.86□□□□□ -1.79
USF3-204ENST00000496826 FAM168BA1KXE4 195 aa3.86□□□□□ -1.79
USF3-204ENST00000496826 FP248Q71RG6 208 aaPredicted RBP3.86□□□□□ -1.79
USF3-204ENST00000496826 Q8N377 158 aa3.86□□□□□ -1.79
USF3-204ENST00000496826 WDR90Q96KV7 1748 aa3.86□□□□□ -1.79
USF3-204ENST00000496826 CR1P17927 2039 aa3.85□□□□□ -1.79
USF3-204ENST00000496826 PRR26Q8N8Z3 221 aa3.85□□□□□ -1.79
USF3-204ENST00000496826 C11orf21Q9P2W6 132 aa3.84□□□□□ -1.79
USF3-204ENST00000496826 DEFB1P60022 68 aa3.84□□□□□ -1.79
USF3-204ENST00000496826 CRIP1P50238 77 aa3.84□□□□□ -1.8
USF3-204ENST00000496826 C20orf166-AS1Q96NR2 134 aa3.84□□□□□ -1.8
USF3-204ENST00000496826 SMCPP49901 116 aaPredicted RBP3.83□□□□□ -1.8
USF3-204ENST00000496826 COL4A4P53420 1690 aaPredicted RBP3.82□□□□□ -1.8
USF3-204ENST00000496826 Q5XG85 94 aa3.82□□□□□ -1.8
USF3-204ENST00000496826 LINC00310P59036 64 aa3.82□□□□□ -1.8
USF3-204ENST00000496826 C19orf73Q9NVV2 129 aa3.81□□□□□ -1.8
USF3-204ENST00000496826 Q6ZR54 194 aa3.8□□□□□ -1.8
USF3-204ENST00000496826 Q8N1X5 172 aa3.8□□□□□ -1.8
USF3-204ENST00000496826 C10orf99Q6UWK7 81 aa3.8□□□□□ -1.8
USF3-204ENST00000496826 M0QZ58 72 aa3.79□□□□□ -1.8
USF3-204ENST00000496826 A0A1W2PNU3 283 aaPredicted RBP3.79□□□□□ -1.8
USF3-204ENST00000496826 COL27A1Q8IZC6 1860 aaPredicted RBP3.79□□□□□ -1.8
USF3-204ENST00000496826 SPRR4Q96PI1 79 aa3.79□□□□□ -1.8
USF3-204ENST00000496826 SPTBN4Q9H254 2564 aa3.78□□□□□ -1.8
USF3-204ENST00000496826 CNBPP62633 177 aaKnown RBP3.76□□□□□ -1.81
USF3-204ENST00000496826 ABCA12Q86UK0 2595 aa3.76□□□□□ -1.81
USF3-204ENST00000496826 A0A087WTM6 91 aa3.75□□□□□ -1.81
USF3-204ENST00000496826 LINC00612Q8N6U2 182 aa3.75□□□□□ -1.81
USF3-204ENST00000496826 U3KQA8 63 aa3.75□□□□□ -1.81
USF3-204ENST00000496826 TNP1P09430 55 aa3.74□□□□□ -1.81
USF3-204ENST00000496826 MMP24-AS1A0A0U1RRL7 71 aa3.74□□□□□ -1.81
USF3-204ENST00000496826 A0A087X002 238 aa3.73□□□□□ -1.81
USF3-204ENST00000496826 JMJD1CQ15652 2540 aa3.73□□□□□ -1.81
USF3-204ENST00000496826 URB1-AS1Q96HZ7 61 aa3.72□□□□□ -1.81
USF3-204ENST00000496826 Q5VSD8 79 aa3.7□□□□□ -1.82
USF3-204ENST00000496826 THSD7BQ9C0I4 1608 aa3.69□□□□□ -1.82
USF3-204ENST00000496826 FASNP49327 2511 aaKnown RBP3.68□□□□□ -1.82
USF3-204ENST00000496826 ADM2Q7Z4H4 148 aa3.68□□□□□ -1.82
USF3-204ENST00000496826 PRAC1Q96KF2 57 aa3.68□□□□□ -1.82
USF3-204ENST00000496826 PRO2289Q9P1D8 64 aa3.67□□□□□ -1.82
USF3-204ENST00000496826 SETD2Q9BYW2 2564 aaPredicted RBP3.66□□□□□ -1.82
USF3-204ENST00000496826 NOTCH2NLQ7Z3S9 236 aa3.66□□□□□ -1.82
USF3-204ENST00000496826 SPRR1BP22528 89 aa3.66□□□□□ -1.82
USF3-204ENST00000496826 A0A1W2PPR1 153 aa3.66□□□□□ -1.82
USF3-204ENST00000496826 COL4A5P29400 1685 aa3.65□□□□□ -1.82
USF3-204ENST00000496826 Q8NDZ9 215 aa3.64□□□□□ -1.83
USF3-204ENST00000496826 ANKRD17O75179 2603 aaKnown RBP3.64□□□□□ -1.83
USF3-204ENST00000496826 CHD8Q9HCK8 2581 aa3.64□□□□□ -1.83
USF3-204ENST00000496826 A0A096LNJ9 63 aa3.64□□□□□ -1.83
USF3-204ENST00000496826 PANO1I0J062 215 aa3.63□□□□□ -1.83
USF3-204ENST00000496826 USP9YO00507 2555 aaPredicted RBP3.63□□□□□ -1.83
USF3-204ENST00000496826 WISP2O76076 250 aa3.63□□□□□ -1.83
USF3-204ENST00000496826 Q5W150 140 aa3.63□□□□□ -1.83
USF3-204ENST00000496826 A8MU10 97 aa3.61□□□□□ -1.83
USF3-204ENST00000496826 SMR3BP02814 79 aaPredicted RBP3.61□□□□□ -1.83
USF3-204ENST00000496826 Q5VV11 94 aa3.6□□□□□ -1.83
USF3-204ENST00000496826 STAB1Q9NY15 2570 aa3.6□□□□□ -1.83
USF3-204ENST00000496826 KRTAP25-1Q3LHN0 102 aa3.6□□□□□ -1.83
USF3-204ENST00000496826 RPS29P62273 56 aaKnown RBP3.59□□□□□ -1.83
USF3-204ENST00000496826 ZFHX2Q9C0A1 2572 aaPredicted RBP3.59□□□□□ -1.84
USF3-204ENST00000496826 GAS8-AS1O95177 125 aa3.59□□□□□ -1.84
USF3-204ENST00000496826 COL4A3Q01955 1670 aa3.58□□□□□ -1.84
USF3-204ENST00000496826 KRTAP24-1Q3LI83 254 aa3.58□□□□□ -1.84
USF3-204ENST00000496826 COL4A1P02462 1669 aa3.57□□□□□ -1.84
USF3-204ENST00000496826 C10orf95Q9H7T3 257 aa3.57□□□□□ -1.84
USF3-204ENST00000496826 MUC22E2RYF6 1773 aaPredicted RBP3.56□□□□□ -1.84
USF3-204ENST00000496826 USP24Q9UPU5 2620 aa3.56□□□□□ -1.84
USF3-204ENST00000496826 IGF2RP11717 2491 aa3.56□□□□□ -1.84
USF3-204ENST00000496826 CYSTM1Q9H1C7 97 aa3.55□□□□□ -1.84
USF3-204ENST00000496826 PLAC8Q9NZF1 115 aa3.55□□□□□ -1.84
USF3-204ENST00000496826 A8MUU9 505 aa3.55□□□□□ -1.84
USF3-204ENST00000496826 KLK9Q2XQG4 91 aa3.54□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms