RNA–Protein interactions for RNA: ENST00000488896.1

PTPN4-212, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 575 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-212ENST00000488896 TENM2Q9NT68 2774 aa-0.35□□□□□ -2.47
PTPN4-212ENST00000488896 A0A087WXM4 84 aa-0.35□□□□□ -2.47
PTPN4-212ENST00000488896 PVALEFA0A1B0GWK0 134 aa-0.35□□□□□ -2.47
PTPN4-212ENST00000488896 UMAD1C9J7I0 102 aa-0.35□□□□□ -2.47
PTPN4-212ENST00000488896 SPRR2EP22531 72 aa-0.35□□□□□ -2.47
PTPN4-212ENST00000488896 RABAC1Q9UI14 185 aa-0.35□□□□□ -2.47
PTPN4-212ENST00000488896 AKAP12Q02952 1782 aa-0.35□□□□□ -2.47
PTPN4-212ENST00000488896 NBEAL1Q6ZS30 2694 aa-0.35□□□□□ -2.47
PTPN4-212ENST00000488896 CICQ96RK0 1608 aaPredicted RBP-0.35□□□□□ -2.47
PTPN4-212ENST00000488896 SPTBN4Q9H254 2564 aa-0.36□□□□□ -2.47
PTPN4-212ENST00000488896 TROQ12816 1431 aaPredicted RBP-0.36□□□□□ -2.47
PTPN4-212ENST00000488896 VPS8Q8N3P4 1428 aa-0.36□□□□□ -2.47
PTPN4-212ENST00000488896 RGPD4Q7Z3J3 1758 aa-0.36□□□□□ -2.47
PTPN4-212ENST00000488896 FAT2Q9NYQ8 4349 aa-0.36□□□□□ -2.47
PTPN4-212ENST00000488896 KRTAP20-2Q3LI61 65 aa-0.36□□□□□ -2.47
PTPN4-212ENST00000488896 STAB2Q8WWQ8 2551 aa-0.36□□□□□ -2.47
PTPN4-212ENST00000488896 SETD2Q9BYW2 2564 aaPredicted RBP-0.36□□□□□ -2.47
PTPN4-212ENST00000488896 SONP18583 2426 aaKnown RBP-0.36□□□□□ -2.47
PTPN4-212ENST00000488896 FANCAO15360 1455 aa-0.36□□□□□ -2.47
PTPN4-212ENST00000488896 ATP7BP35670 1465 aa-0.36□□□□□ -2.47
PTPN4-212ENST00000488896 RGPD3A6NKT7 1758 aaPredicted RBP-0.37□□□□□ -2.47
PTPN4-212ENST00000488896 CREBBPQ92793 2442 aa-0.37□□□□□ -2.47
PTPN4-212ENST00000488896 IFI6P09912 130 aa-0.37□□□□□ -2.47
PTPN4-212ENST00000488896 RGPD8O14715 1765 aaPredicted RBP-0.37□□□□□ -2.47
PTPN4-212ENST00000488896 RGPD5Q99666 1765 aa-0.37□□□□□ -2.47
PTPN4-212ENST00000488896 SVEP1Q4LDE5 3571 aa-0.37□□□□□ -2.47
PTPN4-212ENST00000488896 RGPD1P0DJD0 1748 aa-0.38□□□□□ -2.47
PTPN4-212ENST00000488896 TDRG1Q3Y452 100 aa-0.38□□□□□ -2.47
PTPN4-212ENST00000488896 ALMS1Q8TCU4 4167 aa-0.39□□□□□ -2.47
PTPN4-212ENST00000488896 HECTD4Q9Y4D8 3996 aa-0.39□□□□□ -2.47
PTPN4-212ENST00000488896 NCOA2Q15596 1464 aa-0.39□□□□□ -2.47
PTPN4-212ENST00000488896 COL6A3P12111 3177 aa-0.39□□□□□ -2.47
PTPN4-212ENST00000488896 C9orf92A6NGG3 77 aa-0.39□□□□□ -2.47
PTPN4-212ENST00000488896 NDUFA4O00483 81 aa-0.39□□□□□ -2.47
PTPN4-212ENST00000488896 ADIRFQ15847 76 aa-0.39□□□□□ -2.47
PTPN4-212ENST00000488896 ZFHX3Q15911 3703 aa-0.39□□□□□ -2.47
PTPN4-212ENST00000488896 QSER1Q2KHR3 1735 aa-0.39□□□□□ -2.47
PTPN4-212ENST00000488896 PREX1Q8TCU6 1659 aa-0.4□□□□□ -2.47
PTPN4-212ENST00000488896 C4AP0C0L4 1744 aa-0.4□□□□□ -2.47
PTPN4-212ENST00000488896 C4BP0C0L5 1744 aa-0.4□□□□□ -2.47
PTPN4-212ENST00000488896 MUC2Q02817 5179 aa-0.4□□□□□ -2.47
PTPN4-212ENST00000488896 ANKRD26Q9UPS8 1709 aa-0.4□□□□□ -2.47
PTPN4-212ENST00000488896 PTPN23Q9H3S7 1636 aa-0.4□□□□□ -2.47
PTPN4-212ENST00000488896 LTN1O94822 1766 aa-0.41□□□□□ -2.47
PTPN4-212ENST00000488896 SMIM13P0DJ93 91 aa-0.41□□□□□ -2.48
PTPN4-212ENST00000488896 DEFB130BP0DP73 79 aa-0.41□□□□□ -2.48
PTPN4-212ENST00000488896 DEFB130AP0DP74 79 aa-0.41□□□□□ -2.48
PTPN4-212ENST00000488896 NREPQ16612 68 aa-0.41□□□□□ -2.48
PTPN4-212ENST00000488896 S100A13Q99584 98 aa-0.41□□□□□ -2.48
PTPN4-212ENST00000488896 ST20Q9HBF5 79 aa-0.41□□□□□ -2.48
PTPN4-212ENST00000488896 TNRC6CQ9HCJ0 1690 aaKnown RBP-0.41□□□□□ -2.48
PTPN4-212ENST00000488896 ACACAQ13085 2346 aa-0.41□□□□□ -2.48
PTPN4-212ENST00000488896 ANKRD50Q9ULJ7 1429 aa-0.41□□□□□ -2.48
PTPN4-212ENST00000488896 ADAMTS12P58397 1594 aa-0.41□□□□□ -2.48
PTPN4-212ENST00000488896 DSTQ03001 7570 aaKnown RBP-0.42□□□□□ -2.48
PTPN4-212ENST00000488896 H3BUT2 72 aa-0.42□□□□□ -2.48
PTPN4-212ENST00000488896 GNG2P59768 71 aa-0.42□□□□□ -2.48
PTPN4-212ENST00000488896 CEP162Q5TB80 1403 aa-0.42□□□□□ -2.48
PTPN4-212ENST00000488896 LRP1BQ9NZR2 4599 aa-0.42□□□□□ -2.48
PTPN4-212ENST00000488896 SUPT6HQ7KZ85 1726 aaKnown RBP-0.42□□□□□ -2.48
PTPN4-212ENST00000488896 UBR1Q8IWV7 1749 aa-0.42□□□□□ -2.48
PTPN4-212ENST00000488896 MYO3AQ8NEV4 1616 aa-0.42□□□□□ -2.48
PTPN4-212ENST00000488896 IAPPP10997 89 aa-0.43□□□□□ -2.48
PTPN4-212ENST00000488896 S4R3F8 94 aa-0.43□□□□□ -2.48
PTPN4-212ENST00000488896 SCN11AQ9UI33 1791 aa-0.43□□□□□ -2.48
PTPN4-212ENST00000488896 ALKQ9UM73 1620 aa-0.43□□□□□ -2.48
PTPN4-212ENST00000488896 DOT1LQ8TEK3 1739 aa-0.44□□□□□ -2.48
PTPN4-212ENST00000488896 UACAQ9BZF9 1416 aa-0.44□□□□□ -2.48
PTPN4-212ENST00000488896 MT1AP04731 61 aa-0.44□□□□□ -2.48
PTPN4-212ENST00000488896 MT4P47944 62 aa-0.44□□□□□ -2.48
PTPN4-212ENST00000488896 PRLHP81277 87 aa-0.44□□□□□ -2.48
PTPN4-212ENST00000488896 SPRR2FQ96RM1 72 aa-0.44□□□□□ -2.48
PTPN4-212ENST00000488896 URB2Q14146 1524 aaKnown RBP-0.44□□□□□ -2.48
PTPN4-212ENST00000488896 H0YAA0 97 aa-0.45□□□□□ -2.48
PTPN4-212ENST00000488896 DEFB110Q30KQ9 67 aa-0.45□□□□□ -2.48
PTPN4-212ENST00000488896 DEFB106AQ8N104 65 aa-0.45□□□□□ -2.48
PTPN4-212ENST00000488896 HECTD1Q9ULT8 2610 aa-0.45□□□□□ -2.48
PTPN4-212ENST00000488896 NWD1Q149M9 1564 aa-0.45□□□□□ -2.48
PTPN4-212ENST00000488896 USP32Q8NFA0 1604 aa-0.46□□□□□ -2.48
PTPN4-212ENST00000488896 POLR1AO95602 1720 aaPredicted RBP-0.46□□□□□ -2.48
PTPN4-212ENST00000488896 FASNP49327 2511 aaKnown RBP-0.46□□□□□ -2.48
PTPN4-212ENST00000488896 H3BVH4 76 aa-0.46□□□□□ -2.48
PTPN4-212ENST00000488896 ATP5EP2Q5VTU8 51 aa-0.46□□□□□ -2.48
PTPN4-212ENST00000488896 MUC12Q9UKN1 5478 aa-0.46□□□□□ -2.48
PTPN4-212ENST00000488896 MTORP42345 2549 aa-0.46□□□□□ -2.48
PTPN4-212ENST00000488896 MXRA5Q9NR99 2828 aa-0.46□□□□□ -2.48
PTPN4-212ENST00000488896 EPG5Q9HCE0 2579 aa-0.47□□□□□ -2.48
PTPN4-212ENST00000488896 PDZD2O15018 2839 aa-0.47□□□□□ -2.48
PTPN4-212ENST00000488896 MRPL33O75394 65 aaKnown RBP-0.47□□□□□ -2.48
PTPN4-212ENST00000488896 NF1P21359 2839 aa-0.48□□□□□ -2.49
PTPN4-212ENST00000488896 KIF14Q15058 1648 aa-0.48□□□□□ -2.49
PTPN4-212ENST00000488896 ZNF831Q5JPB2 1677 aa-0.48□□□□□ -2.49
PTPN4-212ENST00000488896 LYNX1G3V0Z9 82 aa-0.48□□□□□ -2.49
PTPN4-212ENST00000488896 CRIP1P50238 77 aa-0.48□□□□□ -2.49
PTPN4-212ENST00000488896 DEFB121Q5J5C9 76 aa-0.48□□□□□ -2.49
PTPN4-212ENST00000488896 TIAM2Q8IVF5 1701 aa-0.48□□□□□ -2.49
PTPN4-212ENST00000488896 ARFGEF2Q9Y6D5 1785 aa-0.48□□□□□ -2.49
PTPN4-212ENST00000488896 MAP1AP78559 2803 aaPredicted RBP-0.48□□□□□ -2.49
PTPN4-212ENST00000488896 CCDC168Q8NDH2 2452 aa-0.48□□□□□ -2.49
PTPN4-212ENST00000488896 ABCC3O15438 1527 aa-0.48□□□□□ -2.49
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms