RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 NDUFS5O43920 106 aa3.25□□□□□ -1.89
USP40-213ENST00000483216 LY6HO94772 140 aa3.25□□□□□ -1.89
USP40-213ENST00000483216 TLX1NBP0CAT3 122 aa3.25□□□□□ -1.89
USP40-213ENST00000483216 UBE2BP63146 152 aa3.25□□□□□ -1.89
USP40-213ENST00000483216 IGFL1Q6UW32 110 aa3.25□□□□□ -1.89
USP40-213ENST00000483216 NTM-AS1Q6ZSK4 140 aa3.25□□□□□ -1.89
USP40-213ENST00000483216 C15orf56Q8N910 161 aa3.25□□□□□ -1.89
USP40-213ENST00000483216 BPESC1Q9GZL8 116 aa3.25□□□□□ -1.89
USP40-213ENST00000483216 PKIGQ9Y2B9 76 aa3.25□□□□□ -1.89
USP40-213ENST00000483216 CRYBG3Q68DQ2 2970 aa3.25□□□□□ -1.89
USP40-213ENST00000483216 HIVEP3Q5T1R4 2406 aa3.24□□□□□ -1.89
USP40-213ENST00000483216 USP9XQ93008 2570 aaPredicted RBP3.24□□□□□ -1.89
USP40-213ENST00000483216 SPTBN1Q01082 2364 aaKnown RBP3.24□□□□□ -1.89
USP40-213ENST00000483216 A0A087WVE0 104 aa3.24□□□□□ -1.89
USP40-213ENST00000483216 BPY2O14599 106 aa3.24□□□□□ -1.89
USP40-213ENST00000483216 CCL18P55774 89 aa3.24□□□□□ -1.89
USP40-213ENST00000483216 NREPQ16612 68 aa3.24□□□□□ -1.89
USP40-213ENST00000483216 SPINK13Q1W4C9 94 aa3.24□□□□□ -1.89
USP40-213ENST00000483216 Q6ZQT0 140 aa3.24□□□□□ -1.89
USP40-213ENST00000483216 LINC00337Q8N6G1 96 aa3.24□□□□□ -1.89
USP40-213ENST00000483216 UBE2E2Q96LR5 201 aa3.24□□□□□ -1.89
USP40-213ENST00000483216 LIMD2Q9BT23 127 aa3.24□□□□□ -1.89
USP40-213ENST00000483216 CYP4F30PQ9H0H9 118 aa3.24□□□□□ -1.89
USP40-213ENST00000483216 ABCA1O95477 2261 aa3.24□□□□□ -1.89
USP40-213ENST00000483216 HECTD1Q9ULT8 2610 aa3.23□□□□□ -1.89
USP40-213ENST00000483216 DOPEY2Q9Y3R5 2298 aa3.23□□□□□ -1.89
USP40-213ENST00000483216 TRBV7-4A0A0J9YYF1 115 aa3.23□□□□□ -1.89
USP40-213ENST00000483216 H3BPC8 53 aa3.23□□□□□ -1.89
USP40-213ENST00000483216 ELOF1P60002 83 aaKnown RBP3.23□□□□□ -1.89
USP40-213ENST00000483216 UNQ9165/PRO28630Q6UXU0 137 aa3.23□□□□□ -1.89
USP40-213ENST00000483216 CENPEQ02224 2701 aa3.23□□□□□ -1.89
USP40-213ENST00000483216 WNK2Q9Y3S1 2297 aa3.23□□□□□ -1.89
USP40-213ENST00000483216 SPTAN1Q13813 2472 aaKnown RBP3.22□□□□□ -1.89
USP40-213ENST00000483216 DOPEY1Q5JWR5 2465 aa3.22□□□□□ -1.89
USP40-213ENST00000483216 HRNRQ86YZ3 2850 aaPredicted RBP3.22□□□□□ -1.89
USP40-213ENST00000483216 IGHV3-11P01762 117 aa3.22□□□□□ -1.89
USP40-213ENST00000483216 COX7BP24311 80 aa3.22□□□□□ -1.89
USP40-213ENST00000483216 LINC00575Q6W349 94 aa3.22□□□□□ -1.89
USP40-213ENST00000483216 SOSTDC1Q6X4U4 206 aa3.22□□□□□ -1.89
USP40-213ENST00000483216 C16orf95Q9H693 158 aa3.22□□□□□ -1.89
USP40-213ENST00000483216 TOMM7Q9P0U1 55 aa3.22□□□□□ -1.89
USP40-213ENST00000483216 C22orf24Q9Y442 160 aa3.22□□□□□ -1.89
USP40-213ENST00000483216 LRBAP50851 2863 aa3.22□□□□□ -1.89
USP40-213ENST00000483216 DCHS2Q6V1P9 2916 aa3.22□□□□□ -1.89
USP40-213ENST00000483216 PTPN13Q12923 2485 aa3.21□□□□□ -1.89
USP40-213ENST00000483216 IGKV3-7A0A075B6H7 116 aa3.21□□□□□ -1.9
USP40-213ENST00000483216 IGHV3OR16-9A0A0B4J2B5 98 aa3.21□□□□□ -1.9
USP40-213ENST00000483216 C19orf84I3L1E1 186 aa3.21□□□□□ -1.9
USP40-213ENST00000483216 MP68P56378 58 aa3.21□□□□□ -1.9
USP40-213ENST00000483216 WFDC11Q8NEX6 87 aa3.21□□□□□ -1.9
USP40-213ENST00000483216 DIRC1Q969H9 104 aa3.21□□□□□ -1.9
USP40-213ENST00000483216 ITPR2Q14571 2701 aa3.21□□□□□ -1.9
USP40-213ENST00000483216 TEX15Q9BXT5 2789 aa3.21□□□□□ -1.9
USP40-213ENST00000483216 TACC2O95359 2948 aa3.2□□□□□ -1.9
USP40-213ENST00000483216 UNC79Q9P2D8 2635 aa3.2□□□□□ -1.9
USP40-213ENST00000483216 TRGV2A0A075B6R0 118 aa3.2□□□□□ -1.9
USP40-213ENST00000483216 OXTP01178 125 aa3.2□□□□□ -1.9
USP40-213ENST00000483216 HTN1P15515 57 aa3.2□□□□□ -1.9
USP40-213ENST00000483216 COX6A2Q02221 97 aa3.2□□□□□ -1.9
USP40-213ENST00000483216 FP248Q71RG6 208 aaPredicted RBP3.2□□□□□ -1.9
USP40-213ENST00000483216 FAM19A1Q7Z5A9 133 aa3.2□□□□□ -1.9
USP40-213ENST00000483216 MED13LQ71F56 2210 aa3.2□□□□□ -1.9
USP40-213ENST00000483216 APCP25054 2843 aa3.2□□□□□ -1.9
USP40-213ENST00000483216 NAV2Q8IVL1 2488 aa3.19□□□□□ -1.9
USP40-213ENST00000483216 MAST4O15021 2626 aa3.19□□□□□ -1.9
USP40-213ENST00000483216 TRGV1A0A0A0MS02 117 aa3.19□□□□□ -1.9
USP40-213ENST00000483216 TRBV6-8A0A0A6YYG3 113 aa3.19□□□□□ -1.9
USP40-213ENST00000483216 IGHV3-73A0A0B4J1V6 119 aa3.19□□□□□ -1.9
USP40-213ENST00000483216 TRGV4A0A0C4DH28 118 aa3.19□□□□□ -1.9
USP40-213ENST00000483216 A0A1B0GVX0 72 aa3.19□□□□□ -1.9
USP40-213ENST00000483216 hDV103S1A0JD37 113 aa3.19□□□□□ -1.9
USP40-213ENST00000483216 B4DSR2 109 aa3.19□□□□□ -1.9
USP40-213ENST00000483216 RNASE13Q5GAN3 156 aaKnown RBP3.19□□□□□ -1.9
USP40-213ENST00000483216 ATP11AUNQ6ZP68 121 aa3.19□□□□□ -1.9
USP40-213ENST00000483216 C11orf72Q8NBR9 251 aa3.19□□□□□ -1.9
USP40-213ENST00000483216 CCL19Q99731 98 aa3.19□□□□□ -1.9
USP40-213ENST00000483216 AKAP6Q13023 2319 aa3.19□□□□□ -1.9
USP40-213ENST00000483216 CREBBPQ92793 2442 aa3.18□□□□□ -1.9
USP40-213ENST00000483216 H3BUX3 64 aa3.18□□□□□ -1.9
USP40-213ENST00000483216 PRB4P10163 310 aaPredicted RBP3.18□□□□□ -1.9
USP40-213ENST00000483216 DEFB131AP59861 70 aa3.18□□□□□ -1.9
USP40-213ENST00000483216 C6orf99Q4VX62 202 aa3.18□□□□□ -1.9
USP40-213ENST00000483216 Q5W150 140 aa3.18□□□□□ -1.9
USP40-213ENST00000483216 SPANXA2-OT1Q8N9U9 137 aa3.18□□□□□ -1.9
USP40-213ENST00000483216 RMI2Q96E14 147 aa3.18□□□□□ -1.9
USP40-213ENST00000483216 CYSTM1Q9H1C7 97 aa3.18□□□□□ -1.9
USP40-213ENST00000483216 SNURFQ9Y675 71 aa3.18□□□□□ -1.9
USP40-213ENST00000483216 ABCA2Q9BZC7 2435 aa3.17□□□□□ -1.9
USP40-213ENST00000483216 GVQW2A0A096LPI5 108 aaPredicted RBP3.17□□□□□ -1.9
USP40-213ENST00000483216 LINC00959A0A1B0GUT2 108 aa3.17□□□□□ -1.9
USP40-213ENST00000483216 ETDCA0A1B0GVM5 59 aa3.17□□□□□ -1.9
USP40-213ENST00000483216 KTN1-AS1Q86SY8 53 aa3.17□□□□□ -1.9
USP40-213ENST00000483216 PDZD2O15018 2839 aa3.17□□□□□ -1.9
USP40-213ENST00000483216 NBPF19A0A087WUL8 3843 aa3.17□□□□□ -1.9
USP40-213ENST00000483216 HCG22E2RYF7 251 aa3.16□□□□□ -1.9
USP40-213ENST00000483216 IGLV6-57P01721 117 aa3.16□□□□□ -1.9
USP40-213ENST00000483216 MSMBP08118 114 aa3.16□□□□□ -1.9
USP40-213ENST00000483216 C4orf3Q8WVX3 66 aa3.16□□□□□ -1.9
USP40-213ENST00000483216 FBN2P35556 2912 aa3.16□□□□□ -1.9
USP40-213ENST00000483216 OTOGQ6ZRI0 2925 aa3.15□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms