RNA–Protein interactions for RNA: ENST00000476413.1

VPS50-212, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 381 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-212ENST00000476413 TNRC18O15417 2968 aaPredicted RBP0.1□□□□□ -2.39
VPS50-212ENST00000476413 HTTP42858 3142 aa0.1□□□□□ -2.39
VPS50-212ENST00000476413 ACACBO00763 2458 aa0.1□□□□□ -2.39
VPS50-212ENST00000476413 BSNQ9UPA5 3926 aa0.1□□□□□ -2.39
VPS50-212ENST00000476413 CEP295Q9C0D2 2601 aa0.1□□□□□ -2.39
VPS50-212ENST00000476413 THOC2Q8NI27 1593 aaKnown RBP0.1□□□□□ -2.39
VPS50-212ENST00000476413 SRRM2Q9UQ35 2752 aaKnown RBP0.1□□□□□ -2.39
VPS50-212ENST00000476413 A0A0G2JMZ2 1700 aa0.1□□□□□ -2.39
VPS50-212ENST00000476413 KIAA1551Q9HCM1 1747 aa0.1□□□□□ -2.39
VPS50-212ENST00000476413 ANKRD26Q9UPS8 1709 aa0.1□□□□□ -2.39
VPS50-212ENST00000476413 CCDC18Q5T9S5 1454 aa0.1□□□□□ -2.39
VPS50-212ENST00000476413 ALKQ9UM73 1620 aa0.09□□□□□ -2.39
VPS50-212ENST00000476413 SHPRHQ149N8 1683 aa0.09□□□□□ -2.39
VPS50-212ENST00000476413 CFAP43Q8NDM7 1665 aa0.09□□□□□ -2.39
VPS50-212ENST00000476413 SNHG12Q9BXW3 62 aa0.09□□□□□ -2.4
VPS50-212ENST00000476413 REV3LO60673 3130 aa0.09□□□□□ -2.4
VPS50-212ENST00000476413 DSPP15924 2871 aaKnown RBP0.09□□□□□ -2.4
VPS50-212ENST00000476413 UBR1Q8IWV7 1749 aa0.09□□□□□ -2.4
VPS50-212ENST00000476413 RALGAPBQ86X10 1494 aa0.09□□□□□ -2.4
VPS50-212ENST00000476413 SHROOM2Q13796 1616 aa0.09□□□□□ -2.4
VPS50-212ENST00000476413 KALRNO60229 2985 aa0.09□□□□□ -2.4
VPS50-212ENST00000476413 AKAP9Q99996 3911 aa0.08□□□□□ -2.4
VPS50-212ENST00000476413 COL6A3P12111 3177 aa0.08□□□□□ -2.4
VPS50-212ENST00000476413 WDR87Q6ZQQ6 2873 aa0.08□□□□□ -2.4
VPS50-212ENST00000476413 PLCH1Q4KWH8 1693 aa0.08□□□□□ -2.4
VPS50-212ENST00000476413 TNRC6CQ9HCJ0 1690 aaKnown RBP0.08□□□□□ -2.4
VPS50-212ENST00000476413 CUX1P39880 1505 aa0.08□□□□□ -2.4
VPS50-212ENST00000476413 PLIN4Q96Q06 1357 aa0.08□□□□□ -2.4
VPS50-212ENST00000476413 HECTD4Q9Y4D8 3996 aa0.08□□□□□ -2.4
VPS50-212ENST00000476413 A0A0C4DFX4 3053 aa0.08□□□□□ -2.4
VPS50-212ENST00000476413 ITPR1Q14643 2758 aa0.08□□□□□ -2.4
VPS50-212ENST00000476413 LRRC37AA6NMS7 1700 aa0.08□□□□□ -2.4
VPS50-212ENST00000476413 POLR1AO95602 1720 aaPredicted RBP0.08□□□□□ -2.4
VPS50-212ENST00000476413 ITSN1Q15811 1721 aa0.08□□□□□ -2.4
VPS50-212ENST00000476413 PDZD2O15018 2839 aa0.08□□□□□ -2.4
VPS50-212ENST00000476413 PEG3Q9GZU2 1588 aa0.08□□□□□ -2.4
VPS50-212ENST00000476413 ANKARQ7Z5J8 1434 aa0.08□□□□□ -2.4
VPS50-212ENST00000476413 RRBP1Q9P2E9 1410 aaKnown RBP0.08□□□□□ -2.4
VPS50-212ENST00000476413 KANTRA0A1W2PQU2 76 aa0.08□□□□□ -2.4
VPS50-212ENST00000476413 M0R2T5 61 aa0.08□□□□□ -2.4
VPS50-212ENST00000476413 MRPL33O75394 65 aaKnown RBP0.08□□□□□ -2.4
VPS50-212ENST00000476413 C3orf79P0CE67 100 aa0.08□□□□□ -2.4
VPS50-212ENST00000476413 SNRPFP62306 86 aaKnown RBP0.08□□□□□ -2.4
VPS50-212ENST00000476413 SERF2P84101 59 aa0.08□□□□□ -2.4
VPS50-212ENST00000476413 DEFB114Q30KQ6 69 aa0.08□□□□□ -2.4
VPS50-212ENST00000476413 S100A16Q96FQ6 103 aaKnown RBP0.08□□□□□ -2.4
VPS50-212ENST00000476413 MRPL34Q9BQ48 92 aaKnown RBP0.08□□□□□ -2.4
VPS50-212ENST00000476413 HIGD1BQ9P298 99 aa0.08□□□□□ -2.4
VPS50-212ENST00000476413 UBE2D4Q9Y2X8 147 aa0.08□□□□□ -2.4
VPS50-212ENST00000476413 TACC2O95359 2948 aa0.08□□□□□ -2.4
VPS50-212ENST00000476413 NESP48681 1621 aa0.08□□□□□ -2.4
VPS50-212ENST00000476413 TARBP1Q13395 1621 aaKnown RBP0.08□□□□□ -2.4
VPS50-212ENST00000476413 NBEAQ8NFP9 2946 aa0.08□□□□□ -2.4
VPS50-212ENST00000476413 NKTRP30414 1462 aaKnown RBP0.08□□□□□ -2.4
VPS50-212ENST00000476413 PREX1Q8TCU6 1659 aa0.08□□□□□ -2.4
VPS50-212ENST00000476413 LRBAP50851 2863 aa0.08□□□□□ -2.4
VPS50-212ENST00000476413 ABCC3O15438 1527 aa0.08□□□□□ -2.4
VPS50-212ENST00000476413 RICTORQ6R327 1708 aa0.07□□□□□ -2.4
VPS50-212ENST00000476413 NRAPQ86VF7 1730 aa0.07□□□□□ -2.4
VPS50-212ENST00000476413 PARP4Q9UKK3 1724 aaKnown RBP0.07□□□□□ -2.4
VPS50-212ENST00000476413 ARHGEF5Q12774 1597 aa0.07□□□□□ -2.4
VPS50-212ENST00000476413 BAZ1AQ9NRL2 1556 aaPredicted RBP0.07□□□□□ -2.4
VPS50-212ENST00000476413 UACAQ9BZF9 1416 aa0.07□□□□□ -2.4
VPS50-212ENST00000476413 ANKRD50Q9ULJ7 1429 aa0.07□□□□□ -2.4
VPS50-212ENST00000476413 LAMC1P11047 1609 aa0.07□□□□□ -2.4
VPS50-212ENST00000476413 MYO3AQ8NEV4 1616 aa0.07□□□□□ -2.4
VPS50-212ENST00000476413 C9orf92A6NGG3 77 aa0.07□□□□□ -2.4
VPS50-212ENST00000476413 LINC01549A6NIU2 74 aa0.07□□□□□ -2.4
VPS50-212ENST00000476413 IQCF6A8MYZ5 107 aa0.07□□□□□ -2.4
VPS50-212ENST00000476413 H0YGG7 62 aa0.07□□□□□ -2.4
VPS50-212ENST00000476413 K7EMI3 77 aa0.07□□□□□ -2.4
VPS50-212ENST00000476413 DEFB121Q5J5C9 76 aa0.07□□□□□ -2.4
VPS50-212ENST00000476413 BVES-AS1Q5T3Y7 98 aa0.07□□□□□ -2.4
VPS50-212ENST00000476413 ATP5EP2Q5VTU8 51 aa0.07□□□□□ -2.4
VPS50-212ENST00000476413 GAFA1Q96PS6 74 aa0.07□□□□□ -2.4
VPS50-212ENST00000476413 ATP10BO94823 1461 aa0.07□□□□□ -2.4
VPS50-212ENST00000476413 NCOA2Q15596 1464 aa0.07□□□□□ -2.4
VPS50-212ENST00000476413 ZNF831Q5JPB2 1677 aa0.07□□□□□ -2.4
VPS50-212ENST00000476413 ZFHX3Q15911 3703 aa0.07□□□□□ -2.4
VPS50-212ENST00000476413 DMXL1Q9Y485 3027 aa0.07□□□□□ -2.4
VPS50-212ENST00000476413 ABCC1P33527 1531 aa0.07□□□□□ -2.4
VPS50-212ENST00000476413 MAP3K1Q13233 1512 aa0.07□□□□□ -2.4
VPS50-212ENST00000476413 DUOX2Q9NRD8 1548 aa0.07□□□□□ -2.4
VPS50-212ENST00000476413 TNXBP22105 4242 aa0.07□□□□□ -2.4
VPS50-212ENST00000476413 COL12A1Q99715 3063 aa0.07□□□□□ -2.4
VPS50-212ENST00000476413 CSMD3Q7Z407 3707 aa0.07□□□□□ -2.4
VPS50-212ENST00000476413 RB1CC1Q8TDY2 1594 aa0.06□□□□□ -2.4
VPS50-212ENST00000476413 ARFGEF2Q9Y6D5 1785 aa0.06□□□□□ -2.4
VPS50-212ENST00000476413 C5orf42Q9H799 3197 aa0.06□□□□□ -2.4
VPS50-212ENST00000476413 PTPN23Q9H3S7 1636 aa0.06□□□□□ -2.4
VPS50-212ENST00000476413 COL4A6Q14031 1691 aa0.06□□□□□ -2.4
VPS50-212ENST00000476413 ERVK-7P63135 1459 aa0.06□□□□□ -2.4
VPS50-212ENST00000476413 ABCC10Q5T3U5 1492 aa0.06□□□□□ -2.4
VPS50-212ENST00000476413 DEFB131BA0A096LNP1 70 aa0.06□□□□□ -2.4
VPS50-212ENST00000476413 LCE6AA0A183 80 aa0.06□□□□□ -2.4
VPS50-212ENST00000476413 A8MTW9 85 aa0.06□□□□□ -2.4
VPS50-212ENST00000476413 UMAD1C9J7I0 102 aa0.06□□□□□ -2.4
VPS50-212ENST00000476413 LYNX1G3V0Z9 82 aa0.06□□□□□ -2.4
VPS50-212ENST00000476413 H3BUA1 57 aa0.06□□□□□ -2.4
VPS50-212ENST00000476413 COX7BP24311 80 aa0.06□□□□□ -2.4
Retrieved 100 of 20,778 RNA–protein pairs in 59.3 ms