RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 PCLOQ9Y6V0 5065 aa-0.72□□□□□ -2.52
USP40-209ENST00000452724 BAZ1AQ9NRL2 1556 aaPredicted RBP-0.72□□□□□ -2.52
USP40-209ENST00000452724 CRYBG1Q9Y4K1 1723 aa-0.72□□□□□ -2.53
USP40-209ENST00000452724 CEP162Q5TB80 1403 aa-0.72□□□□□ -2.53
USP40-209ENST00000452724 MXRA5Q9NR99 2828 aa-0.73□□□□□ -2.53
USP40-209ENST00000452724 NEXMIFQ5QGS0 1516 aa-0.73□□□□□ -2.53
USP40-209ENST00000452724 MYMXA0A1B0GTQ4 84 aa-0.73□□□□□ -2.53
USP40-209ENST00000452724 MT1AP04731 61 aa-0.73□□□□□ -2.53
USP40-209ENST00000452724 KRTAP20-2Q3LI61 65 aa-0.73□□□□□ -2.53
USP40-209ENST00000452724 SPTBN4Q9H254 2564 aa-0.74□□□□□ -2.53
USP40-209ENST00000452724 REV3LO60673 3130 aa-0.74□□□□□ -2.53
USP40-209ENST00000452724 BCORQ6W2J9 1755 aa-0.74□□□□□ -2.53
USP40-209ENST00000452724 C3orf79P0CE67 100 aa-0.74□□□□□ -2.53
USP40-209ENST00000452724 PLIN4Q96Q06 1357 aa-0.74□□□□□ -2.53
USP40-209ENST00000452724 HECTD1Q9ULT8 2610 aa-0.74□□□□□ -2.53
USP40-209ENST00000452724 LRRC7Q96NW7 1537 aa-0.74□□□□□ -2.53
USP40-209ENST00000452724 RGPD8O14715 1765 aaPredicted RBP-0.75□□□□□ -2.53
USP40-209ENST00000452724 RGPD5Q99666 1765 aa-0.75□□□□□ -2.53
USP40-209ENST00000452724 EPG5Q9HCE0 2579 aa-0.75□□□□□ -2.53
USP40-209ENST00000452724 AKAP13Q12802 2813 aa-0.75□□□□□ -2.53
USP40-209ENST00000452724 TRAV21A0A0B4J279 112 aa-0.75□□□□□ -2.53
USP40-209ENST00000452724 SNRPFP62306 86 aaKnown RBP-0.75□□□□□ -2.53
USP40-209ENST00000452724 NEBP20929 6669 aa-0.75□□□□□ -2.53
USP40-209ENST00000452724 NBASA2RRP1 2371 aa-0.75□□□□□ -2.53
USP40-209ENST00000452724 COL14A1Q05707 1796 aaKnown RBP-0.75□□□□□ -2.53
USP40-209ENST00000452724 KIF20BQ96Q89 1820 aa-0.75□□□□□ -2.53
USP40-209ENST00000452724 NDUFB1O75438 58 aa-0.76□□□□□ -2.53
USP40-209ENST00000452724 LINC00643Q86TS7 51 aa-0.76□□□□□ -2.53
USP40-209ENST00000452724 SPRR2FQ96RM1 72 aa-0.76□□□□□ -2.53
USP40-209ENST00000452724 Q9H521 79 aa-0.76□□□□□ -2.53
USP40-209ENST00000452724 CCNB3Q8WWL7 1395 aa-0.76□□□□□ -2.53
USP40-209ENST00000452724 ALKQ9UM73 1620 aa-0.76□□□□□ -2.53
USP40-209ENST00000452724 PREX1Q8TCU6 1659 aa-0.76□□□□□ -2.53
USP40-209ENST00000452724 UBR3Q6ZT12 1888 aa-0.76□□□□□ -2.53
USP40-209ENST00000452724 PDE4DIPQ5VU43 2346 aa-0.76□□□□□ -2.53
USP40-209ENST00000452724 PKD1P98161 4303 aa-0.77□□□□□ -2.53
USP40-209ENST00000452724 SPG11Q96JI7 2443 aa-0.77□□□□□ -2.53
USP40-209ENST00000452724 C9orf92A6NGG3 77 aa-0.77□□□□□ -2.53
USP40-209ENST00000452724 RABAC1Q9UI14 185 aa-0.77□□□□□ -2.53
USP40-209ENST00000452724 V9GYS6 101 aa-0.77□□□□□ -2.53
USP40-209ENST00000452724 TRANK1O15050 2925 aa-0.78□□□□□ -2.53
USP40-209ENST00000452724 QSER1Q2KHR3 1735 aa-0.78□□□□□ -2.53
USP40-209ENST00000452724 PVALEFA0A1B0GWK0 134 aa-0.78□□□□□ -2.53
USP40-209ENST00000452724 CEBPZOSA8MTT3 80 aa-0.78□□□□□ -2.53
USP40-209ENST00000452724 ACYP1P07311 99 aa-0.78□□□□□ -2.53
USP40-209ENST00000452724 WFDC9Q8NEX5 89 aa-0.78□□□□□ -2.53
USP40-209ENST00000452724 S100A16Q96FQ6 103 aaKnown RBP-0.78□□□□□ -2.53
USP40-209ENST00000452724 PRO3102Q9H379 93 aa-0.78□□□□□ -2.53
USP40-209ENST00000452724 K7EP34 96 aa-0.79□□□□□ -2.54
USP40-209ENST00000452724 PKD1L3Q7Z443 1732 aa-0.79□□□□□ -2.54
USP40-209ENST00000452724 MT4P47944 62 aa-0.8□□□□□ -2.54
USP40-209ENST00000452724 MYH4Q9Y623 1939 aa-0.8□□□□□ -2.54
USP40-209ENST00000452724 RGPD2P0DJD1 1756 aa-0.8□□□□□ -2.54
USP40-209ENST00000452724 MYO3AQ8NEV4 1616 aa-0.81□□□□□ -2.54
USP40-209ENST00000452724 H3BNG1 76 aa-0.81□□□□□ -2.54
USP40-209ENST00000452724 LINC00158P58513 81 aa-0.81□□□□□ -2.54
USP40-209ENST00000452724 NBPF19A0A087WUL8 3843 aa-0.82□□□□□ -2.54
USP40-209ENST00000452724 ANKRD26Q9UPS8 1709 aa-0.82□□□□□ -2.54
USP40-209ENST00000452724 PRRC2CQ9Y520 2896 aaKnown RBP-0.82□□□□□ -2.54
USP40-209ENST00000452724 LYSTQ99698 3801 aa-0.82□□□□□ -2.54
USP40-209ENST00000452724 TACC2O95359 2948 aa-0.82□□□□□ -2.54
USP40-209ENST00000452724 DNAH6Q9C0G6 4158 aa-0.82□□□□□ -2.54
USP40-209ENST00000452724 RGPD1P0DJD0 1748 aa-0.83□□□□□ -2.54
USP40-209ENST00000452724 TNRC18O15417 2968 aaPredicted RBP-0.83□□□□□ -2.54
USP40-209ENST00000452724 USP32Q8NFA0 1604 aa-0.83□□□□□ -2.54
USP40-209ENST00000452724 FAT3Q8TDW7 4589 aa-0.84□□□□□ -2.54
USP40-209ENST00000452724 LCE6AA0A183 80 aa-0.84□□□□□ -2.54
USP40-209ENST00000452724 DNAH9Q9NYC9 4486 aa-0.84□□□□□ -2.54
USP40-209ENST00000452724 CEP170BQ9Y4F5 1589 aaPredicted RBP-0.84□□□□□ -2.54
USP40-209ENST00000452724 HIVEP1P15822 2718 aa-0.84□□□□□ -2.54
USP40-209ENST00000452724 HERC2O95714 4834 aa-0.85□□□□□ -2.55
USP40-209ENST00000452724 IFI27P40305 119 aaPredicted RBP-0.85□□□□□ -2.55
USP40-209ENST00000452724 STARD9Q9P2P6 4700 aa-0.85□□□□□ -2.55
USP40-209ENST00000452724 ABCC3O15438 1527 aa-0.85□□□□□ -2.55
USP40-209ENST00000452724 URB2Q14146 1524 aaKnown RBP-0.85□□□□□ -2.55
USP40-209ENST00000452724 FASNP49327 2511 aaKnown RBP-0.85□□□□□ -2.55
USP40-209ENST00000452724 NCOA2Q15596 1464 aa-0.86□□□□□ -2.55
USP40-209ENST00000452724 KANTRA0A1W2PQU2 76 aa-0.86□□□□□ -2.55
USP40-209ENST00000452724 UMAD1C9J7I0 102 aa-0.86□□□□□ -2.55
USP40-209ENST00000452724 HMGA1P17096 107 aaKnown RBP-0.86□□□□□ -2.55
USP40-209ENST00000452724 WIZO95785 1651 aa-0.87□□□□□ -2.55
USP40-209ENST00000452724 TNRC6CQ9HCJ0 1690 aaKnown RBP-0.87□□□□□ -2.55
USP40-209ENST00000452724 TEP1Q99973 2627 aaKnown RBP-0.87□□□□□ -2.55
USP40-209ENST00000452724 LYNX1G3V0Z9 82 aa-0.87□□□□□ -2.55
USP40-209ENST00000452724 PLXNC1O60486 1568 aa-0.87□□□□□ -2.55
USP40-209ENST00000452724 NWD1Q149M9 1564 aa-0.87□□□□□ -2.55
USP40-209ENST00000452724 CUBNO60494 3623 aa-0.88□□□□□ -2.55
USP40-209ENST00000452724 PRLHP81277 87 aa-0.88□□□□□ -2.55
USP40-209ENST00000452724 H0YAA0 97 aa-0.89□□□□□ -2.55
USP40-209ENST00000452724 CCDC88BA6NC98 1476 aa-0.89□□□□□ -2.55
USP40-209ENST00000452724 AKAP12Q02952 1782 aa-0.89□□□□□ -2.55
USP40-209ENST00000452724 C4AP0C0L4 1744 aa-0.89□□□□□ -2.55
USP40-209ENST00000452724 C4BP0C0L5 1744 aa-0.89□□□□□ -2.55
USP40-209ENST00000452724 UBR1Q8IWV7 1749 aa-0.89□□□□□ -2.55
USP40-209ENST00000452724 IFI6P09912 130 aa-0.9□□□□□ -2.55
USP40-209ENST00000452724 TDRG1Q3Y452 100 aa-0.9□□□□□ -2.55
USP40-209ENST00000452724 UBR4Q5T4S7 5183 aa-0.9□□□□□ -2.55
USP40-209ENST00000452724 ANKRD50Q9ULJ7 1429 aa-0.9□□□□□ -2.55
USP40-209ENST00000452724 TTC37Q6PGP7 1564 aa-0.91□□□□□ -2.55
USP40-209ENST00000452724 DNAH3Q8TD57 4116 aa-0.91□□□□□ -2.55
Retrieved 100 of 20,778 RNA–protein pairs in 59.8 ms