RNA–Protein interactions for RNA: ENST00000572665.1

CIITA-208, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 560 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-208ENST00000572665 ATP6V1G1O75348 118 aa5.59□□□□□ -1.51
CIITA-208ENST00000572665 HERV-K104P63124 156 aa5.59□□□□□ -1.51
CIITA-208ENST00000572665 VCX2Q9H322 139 aa5.59□□□□□ -1.51
CIITA-208ENST00000572665 LOC389332A0A1B0GUA5 103 aa5.58□□□□□ -1.52
CIITA-208ENST00000572665 NUPR1O60356 82 aa5.58□□□□□ -1.52
CIITA-208ENST00000572665 KIAA0087Q14695 138 aa5.58□□□□□ -1.52
CIITA-208ENST00000572665 C6orf226Q5I0X4 101 aa5.58□□□□□ -1.52
CIITA-208ENST00000572665 FAM104AQ969W3 186 aa5.58□□□□□ -1.52
CIITA-208ENST00000572665 NXT2Q9NPJ8 142 aaKnown RBP5.58□□□□□ -1.52
CIITA-208ENST00000572665 LINC01546A6NGU7 62 aa5.57□□□□□ -1.52
CIITA-208ENST00000572665 CXCL5P42830 114 aa5.57□□□□□ -1.52
CIITA-208ENST00000572665 HERVK_113P63121 156 aa5.57□□□□□ -1.52
CIITA-208ENST00000572665 FABP9Q0Z7S8 132 aa5.57□□□□□ -1.52
CIITA-208ENST00000572665 C2orf66Q6UXQ4 117 aa5.57□□□□□ -1.52
CIITA-208ENST00000572665 Q8IZM0 81 aa5.57□□□□□ -1.52
CIITA-208ENST00000572665 Q8N8P6 123 aa5.57□□□□□ -1.52
CIITA-208ENST00000572665 TOMM7Q9P0U1 55 aa5.57□□□□□ -1.52
CIITA-208ENST00000572665 TRAPPC1Q9Y5R8 145 aa5.57□□□□□ -1.52
CIITA-208ENST00000572665 LINC01549A6NIU2 74 aa5.56□□□□□ -1.52
CIITA-208ENST00000572665 NDUFV3P56181 108 aaKnown RBP5.56□□□□□ -1.52
CIITA-208ENST00000572665 C2orf82Q6UX34 121 aa5.56□□□□□ -1.52
CIITA-208ENST00000572665 GEMIN7Q9H840 131 aaKnown RBP5.56□□□□□ -1.52
CIITA-208ENST00000572665 COLCA2A8K830 154 aa5.55□□□□□ -1.52
CIITA-208ENST00000572665 ZNF861PO60384 105 aa5.55□□□□□ -1.52
CIITA-208ENST00000572665 FAM19A3Q7Z5A8 133 aa5.55□□□□□ -1.52
CIITA-208ENST00000572665 Q8N377 158 aa5.55□□□□□ -1.52
CIITA-208ENST00000572665 AMELXQ99217 191 aa5.55□□□□□ -1.52
CIITA-208ENST00000572665 OCR1Q9BZK8 76 aa5.55□□□□□ -1.52
CIITA-208ENST00000572665 F8VRH5 84 aa5.54□□□□□ -1.52
CIITA-208ENST00000572665 C9orf129Q5T035 196 aaKnown RBP5.54□□□□□ -1.52
CIITA-208ENST00000572665 C18orf32Q8TCD1 76 aa5.54□□□□□ -1.52
CIITA-208ENST00000572665 TP73-AS1Q9UF72 201 aa5.54□□□□□ -1.52
CIITA-208ENST00000572665 LRP2P98164 4655 aa5.53□□□□□ -1.52
CIITA-208ENST00000572665 A0A0U1RQV1 116 aa5.53□□□□□ -1.52
CIITA-208ENST00000572665 SCO1O75880 301 aa5.53□□□□□ -1.52
CIITA-208ENST00000572665 RPL28P46779 137 aaKnown RBP5.53□□□□□ -1.52
CIITA-208ENST00000572665 PRR4Q16378 134 aa5.53□□□□□ -1.52
CIITA-208ENST00000572665 TIMM17AQ99595 171 aa5.53□□□□□ -1.52
CIITA-208ENST00000572665 C22orf24Q9Y442 160 aa5.53□□□□□ -1.52
CIITA-208ENST00000572665 IGIPA6NJ69 53 aa5.52□□□□□ -1.53
CIITA-208ENST00000572665 KRTAP1-4P0C5Y4 121 aa5.52□□□□□ -1.53
CIITA-208ENST00000572665 S100A1P23297 94 aa5.52□□□□□ -1.53
CIITA-208ENST00000572665 LINC00173Q6ZV60 143 aa5.52□□□□□ -1.53
CIITA-208ENST00000572665 MRPL55Q7Z7F7 128 aaKnown RBP5.52□□□□□ -1.53
CIITA-208ENST00000572665 KRTAP11-1Q8IUC1 163 aa5.52□□□□□ -1.53
CIITA-208ENST00000572665 TOMM6Q96B49 74 aa5.52□□□□□ -1.53
CIITA-208ENST00000572665 TRGC2P03986 189 aa5.51□□□□□ -1.53
CIITA-208ENST00000572665 LINC00614P0C842 121 aa5.51□□□□□ -1.53
CIITA-208ENST00000572665 PDZD11Q5EBL8 140 aa5.51□□□□□ -1.53
CIITA-208ENST00000572665 ERASQ7Z444 233 aa5.51□□□□□ -1.53
CIITA-208ENST00000572665 LINC00469Q8N7U9 141 aa5.51□□□□□ -1.53
CIITA-208ENST00000572665 XAGE1AQ9HD64 81 aa5.51□□□□□ -1.53
CIITA-208ENST00000572665 CDKN2A-AS1Q9UH64 79 aa5.51□□□□□ -1.53
CIITA-208ENST00000572665 A0A096LNJ9 63 aa5.5□□□□□ -1.53
CIITA-208ENST00000572665 BCE1O60756 84 aa5.5□□□□□ -1.53
CIITA-208ENST00000572665 CRYGAP11844 174 aa5.5□□□□□ -1.53
CIITA-208ENST00000572665 FA2HQ7L5A8 372 aa5.5□□□□□ -1.53
CIITA-208ENST00000572665 SCGB3A1Q96QR1 104 aa5.5□□□□□ -1.53
CIITA-208ENST00000572665 TINCRA0A1B0GVN0 87 aa5.49□□□□□ -1.53
CIITA-208ENST00000572665 RAB5BP61020 215 aa5.49□□□□□ -1.53
CIITA-208ENST00000572665 NKAPP1Q8N9T2 125 aa5.49□□□□□ -1.53
CIITA-208ENST00000572665 COX7B2Q8TF08 81 aa5.49□□□□□ -1.53
CIITA-208ENST00000572665 A0A0U1RRA0 63 aa5.48□□□□□ -1.53
CIITA-208ENST00000572665 H3BRM9 83 aa5.48□□□□□ -1.53
CIITA-208ENST00000572665 ATP5LO75964 103 aa5.48□□□□□ -1.53
CIITA-208ENST00000572665 TYMSOSQ8TAI1 123 aa5.48□□□□□ -1.53
CIITA-208ENST00000572665 CHCHD1Q96BP2 118 aaKnown RBP5.48□□□□□ -1.53
CIITA-208ENST00000572665 UBE2AP49459 152 aa5.47□□□□□ -1.53
CIITA-208ENST00000572665 LINC00518Q8N0U6 118 aa5.47□□□□□ -1.53
CIITA-208ENST00000572665 RNF213Q63HN8 5207 aa5.47□□□□□ -1.53
CIITA-208ENST00000572665 HBDP02042 147 aa5.46□□□□□ -1.54
CIITA-208ENST00000572665 PMVKQ15126 192 aa5.46□□□□□ -1.54
CIITA-208ENST00000572665 LINC00167Q96N53 147 aa5.46□□□□□ -1.54
CIITA-208ENST00000572665 RPL37AP8A6NKH3 93 aa5.45□□□□□ -1.54
CIITA-208ENST00000572665 HIST1H2BKO60814 126 aa5.45□□□□□ -1.54
CIITA-208ENST00000572665 SERF1AO75920 110 aa5.45□□□□□ -1.54
CIITA-208ENST00000572665 TSPAN13O95857 204 aa5.45□□□□□ -1.54
CIITA-208ENST00000572665 HIST1H2BJP06899 126 aa5.45□□□□□ -1.54
CIITA-208ENST00000572665 HIST1H2BOP23527 126 aa5.45□□□□□ -1.54
CIITA-208ENST00000572665 HIST1H2BBP33778 126 aa5.45□□□□□ -1.54
CIITA-208ENST00000572665 HIST1H2BDP58876 126 aa5.45□□□□□ -1.54
CIITA-208ENST00000572665 HIST1H2BCP62807 126 aa5.45□□□□□ -1.54
CIITA-208ENST00000572665 CTAG1AP78358 180 aa5.45□□□□□ -1.54
CIITA-208ENST00000572665 PMCHL1Q16048 86 aa5.45□□□□□ -1.54
CIITA-208ENST00000572665 HIST2H2BEQ16778 126 aa5.45□□□□□ -1.54
CIITA-208ENST00000572665 FAM229BQ4G0N7 80 aa5.45□□□□□ -1.54
CIITA-208ENST00000572665 HIST2H2BFQ5QNW6 126 aaPredicted RBP5.45□□□□□ -1.54
CIITA-208ENST00000572665 SFTA2Q6UW10 78 aa5.45□□□□□ -1.54
CIITA-208ENST00000572665 HIST1H2BHQ93079 126 aa5.45□□□□□ -1.54
CIITA-208ENST00000572665 HIST1H2BNQ99877 126 aa5.45□□□□□ -1.54
CIITA-208ENST00000572665 HIST1H2BMQ99879 126 aa5.45□□□□□ -1.54
CIITA-208ENST00000572665 CST9LQ9H4G1 147 aa5.45□□□□□ -1.54
CIITA-208ENST00000572665 BAGE3Q86Y29 109 aa5.44□□□□□ -1.54
CIITA-208ENST00000572665 IGKV2D-26A0A0A0MRZ7 120 aa5.43□□□□□ -1.54
CIITA-208ENST00000572665 HSBP1O75506 76 aa5.43□□□□□ -1.54
CIITA-208ENST00000572665 SPINK8P0C7L1 97 aa5.43□□□□□ -1.54
CIITA-208ENST00000572665 COX17Q14061 63 aa5.43□□□□□ -1.54
CIITA-208ENST00000572665 FAM19A2Q8N3H0 131 aa5.42□□□□□ -1.54
CIITA-208ENST00000572665 PFN2P35080 140 aa5.41□□□□□ -1.54
CIITA-208ENST00000572665 NDUFA6P56556 154 aa5.41□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms