RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 KRTAP26-1Q6PEX3 210 aa5.33□□□□□ -1.56
VPS39-213ENST00000570062 MIR7-3HGQ8N6C7 128 aa5.33□□□□□ -1.56
VPS39-213ENST00000570062 PKIGQ9Y2B9 76 aa5.33□□□□□ -1.56
VPS39-213ENST00000570062 RYR1P21817 5038 aa5.33□□□□□ -1.56
VPS39-213ENST00000570062 RYR2Q92736 4967 aa5.32□□□□□ -1.56
VPS39-213ENST00000570062 CAMK2N2Q96S95 79 aa5.32□□□□□ -1.56
VPS39-213ENST00000570062 PFN2P35080 140 aa5.31□□□□□ -1.56
VPS39-213ENST00000570062 Q1RN00 199 aa5.31□□□□□ -1.56
VPS39-213ENST00000570062 SND1-IT1Q9HBX3 110 aa5.31□□□□□ -1.56
VPS39-213ENST00000570062 PSCAO43653 123 aa5.3□□□□□ -1.56
VPS39-213ENST00000570062 SCGB1C2P0DMR2 95 aa5.3□□□□□ -1.56
VPS39-213ENST00000570062 PSMB2P49721 201 aa5.3□□□□□ -1.56
VPS39-213ENST00000570062 SYCNQ0VAF6 134 aa5.3□□□□□ -1.56
VPS39-213ENST00000570062 C2orf82Q6UX34 121 aa5.3□□□□□ -1.56
VPS39-213ENST00000570062 WWC2-AS2Q96NR7 200 aa5.3□□□□□ -1.56
VPS39-213ENST00000570062 Q9HAA7 133 aa5.3□□□□□ -1.56
VPS39-213ENST00000570062 SPCS1Q9Y6A9 102 aa5.3□□□□□ -1.56
VPS39-213ENST00000570062 A0A0U1RRA0 63 aa5.29□□□□□ -1.56
VPS39-213ENST00000570062 NDUFC2-KCTD14E9PQ53 114 aa5.29□□□□□ -1.56
VPS39-213ENST00000570062 K7EP34 96 aa5.29□□□□□ -1.56
VPS39-213ENST00000570062 K7ERJ3 54 aa5.29□□□□□ -1.56
VPS39-213ENST00000570062 SNCGO76070 127 aa5.29□□□□□ -1.56
VPS39-213ENST00000570062 TSPAN13O95857 204 aa5.29□□□□□ -1.56
VPS39-213ENST00000570062 UNQ6190/PRO20217Q6UXQ8 127 aa5.29□□□□□ -1.56
VPS39-213ENST00000570062 TRBV10-2A0A0K0K1G8 114 aa5.28□□□□□ -1.56
VPS39-213ENST00000570062 NBDYA0A0U1RRE5 68 aa5.28□□□□□ -1.56
VPS39-213ENST00000570062 C3orf84H3BNL1 204 aa5.28□□□□□ -1.56
VPS39-213ENST00000570062 TLX1NBP0CAT3 122 aa5.28□□□□□ -1.56
VPS39-213ENST00000570062 DAND5Q8N907 189 aa5.28□□□□□ -1.56
VPS39-213ENST00000570062 C15orf56Q8N910 161 aa5.28□□□□□ -1.56
VPS39-213ENST00000570062 TMEM126AQ9H061 195 aa5.28□□□□□ -1.56
VPS39-213ENST00000570062 USP17L23D6RBM5 183 aa5.27□□□□□ -1.57
VPS39-213ENST00000570062 F8W1H4 67 aa5.27□□□□□ -1.57
VPS39-213ENST00000570062 H0YGX0 51 aa5.27□□□□□ -1.57
VPS39-213ENST00000570062 RPL13AP40429 203 aaKnown RBP5.27□□□□□ -1.57
VPS39-213ENST00000570062 NPC2P61916 151 aa5.27□□□□□ -1.57
VPS39-213ENST00000570062 C6orf48Q9UBA6 75 aa5.27□□□□□ -1.57
VPS39-213ENST00000570062 RPL28P46779 137 aaKnown RBP5.26□□□□□ -1.57
VPS39-213ENST00000570062 ATXN8Q156A1 80 aa5.26□□□□□ -1.57
VPS39-213ENST00000570062 HIGD2BQ4VC39 106 aa5.26□□□□□ -1.57
VPS39-213ENST00000570062 SOSTDC1Q6X4U4 206 aa5.26□□□□□ -1.57
VPS39-213ENST00000570062 C6orf223Q8N319 242 aa5.26□□□□□ -1.57
VPS39-213ENST00000570062 CARD19Q96LW7 228 aa5.26□□□□□ -1.57
VPS39-213ENST00000570062 TENM3Q9P273 2699 aa5.26□□□□□ -1.57
VPS39-213ENST00000570062 DYNC2H1Q8NCM8 4307 aaKnown RBP5.25□□□□□ -1.57
VPS39-213ENST00000570062 C10orf25Q5T742 122 aa5.25□□□□□ -1.57
VPS39-213ENST00000570062 Q6ZRU5 148 aa5.25□□□□□ -1.57
VPS39-213ENST00000570062 A0A1B0GX51 115 aa5.24□□□□□ -1.57
VPS39-213ENST00000570062 H7C2G1 150 aa5.24□□□□□ -1.57
VPS39-213ENST00000570062 CNBPP62633 177 aaKnown RBP5.24□□□□□ -1.57
VPS39-213ENST00000570062 S100A7L2Q5SY68 101 aa5.24□□□□□ -1.57
VPS39-213ENST00000570062 OR13C6PQ8NH95 151 aa5.24□□□□□ -1.57
VPS39-213ENST00000570062 KRTAP9-8Q9BYQ0 159 aa5.24□□□□□ -1.57
VPS39-213ENST00000570062 KRTAP3-1Q9BYR8 98 aa5.24□□□□□ -1.57
VPS39-213ENST00000570062 LOC107984640A0A0U1RRK4 108 aa5.23□□□□□ -1.57
VPS39-213ENST00000570062 M0QXV9 152 aa5.23□□□□□ -1.57
VPS39-213ENST00000570062 HERC2O95714 4834 aa5.23□□□□□ -1.57
VPS39-213ENST00000570062 IGKV2-28A0A075B6P5 120 aa5.22□□□□□ -1.57
VPS39-213ENST00000570062 H3BQ85 93 aa5.22□□□□□ -1.57
VPS39-213ENST00000570062 M0R378 163 aa5.22□□□□□ -1.57
VPS39-213ENST00000570062 TRIAP1O43715 76 aa5.22□□□□□ -1.57
VPS39-213ENST00000570062 IGKV2D-28P01615 120 aa5.22□□□□□ -1.57
VPS39-213ENST00000570062 C9orf116Q5BN46 136 aaPredicted RBP5.22□□□□□ -1.57
VPS39-213ENST00000570062 LINC00526Q96FQ7 95 aa5.22□□□□□ -1.57
VPS39-213ENST00000570062 NAA38Q9BRA0 125 aaKnown RBP5.22□□□□□ -1.57
VPS39-213ENST00000570062 LINC00474Q9P2X8 69 aa5.22□□□□□ -1.57
VPS39-213ENST00000570062 H3BMG7 143 aa5.21□□□□□ -1.58
VPS39-213ENST00000570062 TRACP01848 142 aa5.21□□□□□ -1.58
VPS39-213ENST00000570062 LINC00337Q8N6G1 96 aa5.21□□□□□ -1.58
VPS39-213ENST00000570062 TRBV7-6A0A0J9YX20 115 aa5.2□□□□□ -1.58
VPS39-213ENST00000570062 J3QR89 54 aa5.2□□□□□ -1.58
VPS39-213ENST00000570062 LST1O00453 97 aa5.2□□□□□ -1.58
VPS39-213ENST00000570062 SMIM11BQ8TCY0 68 aa5.2□□□□□ -1.58
VPS39-213ENST00000570062 LINC01600Q96MT4 127 aa5.2□□□□□ -1.58
VPS39-213ENST00000570062 STAB2Q8WWQ8 2551 aa5.19□□□□□ -1.58
VPS39-213ENST00000570062 IGLV5-37A0A075B6J1 123 aa5.19□□□□□ -1.58
VPS39-213ENST00000570062 H3BT86 120 aa5.19□□□□□ -1.58
VPS39-213ENST00000570062 TCL1BO95988 128 aa5.19□□□□□ -1.58
VPS39-213ENST00000570062 DNAL4O96015 105 aa5.19□□□□□ -1.58
VPS39-213ENST00000570062 IGLV6-57P01721 117 aa5.19□□□□□ -1.58
VPS39-213ENST00000570062 LINC01620Q4KN68 170 aa5.19□□□□□ -1.58
VPS39-213ENST00000570062 GAGE2EQ4V326 116 aa5.19□□□□□ -1.58
VPS39-213ENST00000570062 CASC10Q5T4H9 136 aa5.19□□□□□ -1.58
VPS39-213ENST00000570062 C1orf134Q5TEV5 83 aa5.19□□□□□ -1.58
VPS39-213ENST00000570062 Q6ZR54 194 aa5.19□□□□□ -1.58
VPS39-213ENST00000570062 Q6ZRP5 223 aa5.19□□□□□ -1.58
VPS39-213ENST00000570062 NKAPP1Q8N9T2 125 aa5.19□□□□□ -1.58
VPS39-213ENST00000570062 KRTAP1-5Q9BYS1 174 aa5.19□□□□□ -1.58
VPS39-213ENST00000570062 GAGE2DQ9UEU5 116 aa5.19□□□□□ -1.58
VPS39-213ENST00000570062 PLECQ15149 4684 aaKnown RBP5.19□□□□□ -1.58
VPS39-213ENST00000570062 LRCOL1A6NCL2 159 aa5.18□□□□□ -1.58
VPS39-213ENST00000570062 C16orf90A8MZG2 172 aa5.18□□□□□ -1.58
VPS39-213ENST00000570062 SLC25A20O43772 301 aa5.18□□□□□ -1.58
VPS39-213ENST00000570062 LY6G6CO95867 125 aa5.18□□□□□ -1.58
VPS39-213ENST00000570062 VPREB1P12018 145 aa5.18□□□□□ -1.58
VPS39-213ENST00000570062 RPL18AQ02543 176 aaKnown RBP5.18□□□□□ -1.58
VPS39-213ENST00000570062 XAGE1AQ9HD64 81 aa5.18□□□□□ -1.58
VPS39-213ENST00000570062 TRAV23DV6A0A075B6W5 121 aa5.17□□□□□ -1.58
VPS39-213ENST00000570062 K7ERU9 68 aa5.17□□□□□ -1.58
VPS39-213ENST00000570062 NCR3O14931 201 aa5.17□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms