RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 KRTAP10-9P60411 292 aa7.59□□□□□ -1.2
CLK3-226ENST00000569406 CHD6Q8TD26 2715 aa7.58□□□□□ -1.2
CLK3-226ENST00000569406 IGKV2-28A0A075B6P5 120 aa7.58□□□□□ -1.2
CLK3-226ENST00000569406 IGKV2D-28P01615 120 aa7.58□□□□□ -1.2
CLK3-226ENST00000569406 IGHV4-59P01825 116 aa7.58□□□□□ -1.2
CLK3-226ENST00000569406 HCG22E2RYF7 251 aa7.58□□□□□ -1.2
CLK3-226ENST00000569406 DEFB136Q30KP8 78 aa7.58□□□□□ -1.2
CLK3-226ENST00000569406 M0R2N4 97 aa7.58□□□□□ -1.2
CLK3-226ENST00000569406 MED14OSP0DP75 135 aa7.58□□□□□ -1.2
CLK3-226ENST00000569406 COX6A2Q02221 97 aa7.58□□□□□ -1.2
CLK3-226ENST00000569406 FAM104AQ969W3 186 aa7.58□□□□□ -1.2
CLK3-226ENST00000569406 USMG5Q96IX5 58 aa7.58□□□□□ -1.2
CLK3-226ENST00000569406 LINC00158P58513 81 aa7.57□□□□□ -1.2
CLK3-226ENST00000569406 DEFB112Q30KQ8 113 aa7.57□□□□□ -1.2
CLK3-226ENST00000569406 UBE2AP49459 152 aa7.57□□□□□ -1.2
CLK3-226ENST00000569406 FAM19A3Q7Z5A8 133 aa7.57□□□□□ -1.2
CLK3-226ENST00000569406 B4DSR2 109 aa7.56□□□□□ -1.2
CLK3-226ENST00000569406 KRTAP1-3Q8IUG1 177 aa7.56□□□□□ -1.2
CLK3-226ENST00000569406 ESM1Q9NQ30 184 aa7.55□□□□□ -1.2
CLK3-226ENST00000569406 K7EQG2 157 aa7.55□□□□□ -1.2
CLK3-226ENST00000569406 Q8N9L7 120 aa7.55□□□□□ -1.2
CLK3-226ENST00000569406 KLLNB2CW77 178 aa7.54□□□□□ -1.2
CLK3-226ENST00000569406 TRGV1A0A0A0MS02 117 aa7.54□□□□□ -1.2
CLK3-226ENST00000569406 LCA10Q71F78 164 aa7.54□□□□□ -1.2
CLK3-226ENST00000569406 ITPR2Q14571 2701 aa7.54□□□□□ -1.2
CLK3-226ENST00000569406 OXLD1Q5BKU9 147 aa7.53□□□□□ -1.2
CLK3-226ENST00000569406 C7orf65Q6ZTY9 151 aa7.53□□□□□ -1.2
CLK3-226ENST00000569406 VPREB1P12018 145 aa7.53□□□□□ -1.2
CLK3-226ENST00000569406 Q5VV11 94 aa7.53□□□□□ -1.2
CLK3-226ENST00000569406 SETXQ7Z333 2677 aaKnown RBP7.52□□□□□ -1.21
CLK3-226ENST00000569406 A6NED7 52 aa7.52□□□□□ -1.21
CLK3-226ENST00000569406 CXCL6P80162 114 aa7.52□□□□□ -1.21
CLK3-226ENST00000569406 ATP11AUNQ6ZP68 121 aa7.52□□□□□ -1.21
CLK3-226ENST00000569406 PHF5AQ7RTV0 110 aaKnown RBP7.52□□□□□ -1.21
CLK3-226ENST00000569406 ZNF702PQ9H963 129 aa7.52□□□□□ -1.21
CLK3-226ENST00000569406 IGHV4-31P0DP07 118 aa7.51□□□□□ -1.21
CLK3-226ENST00000569406 COX7B2Q8TF08 81 aa7.51□□□□□ -1.21
CLK3-226ENST00000569406 LINC00467Q9BRT7 94 aa7.51□□□□□ -1.21
CLK3-226ENST00000569406 SMIM1B2RUZ4 78 aa7.51□□□□□ -1.21
CLK3-226ENST00000569406 CD164L2Q6UWJ8 174 aa7.51□□□□□ -1.21
CLK3-226ENST00000569406 ERC2-IT1O76042 136 aa7.51□□□□□ -1.21
CLK3-226ENST00000569406 Q6ZQT0 140 aa7.51□□□□□ -1.21
CLK3-226ENST00000569406 NKAPP1Q8N9T2 125 aa7.51□□□□□ -1.21
CLK3-226ENST00000569406 C18orf65Q6ZTR6 163 aa7.5□□□□□ -1.21
CLK3-226ENST00000569406 DIRC1Q969H9 104 aa7.5□□□□□ -1.21
CLK3-226ENST00000569406 FLNAP21333 2647 aaKnown RBP7.5□□□□□ -1.21
CLK3-226ENST00000569406 IGLV5-39A0A0G2JS06 123 aa7.5□□□□□ -1.21
CLK3-226ENST00000569406 DSCR9P59020 149 aa7.5□□□□□ -1.21
CLK3-226ENST00000569406 SERTAD4-AS1Q5TG53 156 aa7.5□□□□□ -1.21
CLK3-226ENST00000569406 Q6YL49 198 aa7.5□□□□□ -1.21
CLK3-226ENST00000569406 Q8N814 137 aa7.5□□□□□ -1.21
CLK3-226ENST00000569406 PRR15LQ9BU68 103 aa7.5□□□□□ -1.21
CLK3-226ENST00000569406 KMT2BQ9UMN6 2715 aaPredicted RBP7.5□□□□□ -1.21
CLK3-226ENST00000569406 TRGV2A0A075B6R0 118 aa7.5□□□□□ -1.21
CLK3-226ENST00000569406 CCL18P55774 89 aa7.5□□□□□ -1.21
CLK3-226ENST00000569406 CELA1Q9UNI1 258 aa7.5□□□□□ -1.21
CLK3-226ENST00000569406 PSCAO43653 123 aa7.49□□□□□ -1.21
CLK3-226ENST00000569406 A6NN06 94 aa7.49□□□□□ -1.21
CLK3-226ENST00000569406 SLURP1P55000 103 aa7.49□□□□□ -1.21
CLK3-226ENST00000569406 LINC00242Q5T6M2 205 aa7.49□□□□□ -1.21
CLK3-226ENST00000569406 NTM-AS1Q6ZSK4 140 aa7.49□□□□□ -1.21
CLK3-226ENST00000569406 SPATA3Q8NHX4 192 aa7.48□□□□□ -1.21
CLK3-226ENST00000569406 FAM30AQ9NZY2 134 aa7.48□□□□□ -1.21
CLK3-226ENST00000569406 CHCHD7Q9BUK0 85 aa7.47□□□□□ -1.21
CLK3-226ENST00000569406 LINC01006Q8NI28 216 aa7.46□□□□□ -1.21
CLK3-226ENST00000569406 HECTD1Q9ULT8 2610 aa7.46□□□□□ -1.22
CLK3-226ENST00000569406 IGLV5-45A0A087WSX0 123 aa7.46□□□□□ -1.22
CLK3-226ENST00000569406 TRBV6-8A0A0A6YYG3 113 aa7.46□□□□□ -1.22
CLK3-226ENST00000569406 OCR1Q9BZK8 76 aa7.46□□□□□ -1.22
CLK3-226ENST00000569406 VWFP04275 2813 aa7.44□□□□□ -1.22
CLK3-226ENST00000569406 PRAC1Q96KF2 57 aa7.44□□□□□ -1.22
CLK3-226ENST00000569406 OTOGQ6ZRI0 2925 aa7.44□□□□□ -1.22
CLK3-226ENST00000569406 A8MTW9 85 aa7.44□□□□□ -1.22
CLK3-226ENST00000569406 CLPSL2Q6UWE3 100 aa7.43□□□□□ -1.22
CLK3-226ENST00000569406 TRGV4A0A0C4DH28 118 aa7.43□□□□□ -1.22
CLK3-226ENST00000569406 PRR3P79522 188 aaKnown RBP7.43□□□□□ -1.22
CLK3-226ENST00000569406 DEFB113Q30KQ7 82 aa7.43□□□□□ -1.22
CLK3-226ENST00000569406 HELZ2Q9BYK8 2649 aaKnown RBP7.43□□□□□ -1.22
CLK3-226ENST00000569406 INSP01308 110 aa7.42□□□□□ -1.22
CLK3-226ENST00000569406 Q6ZSN1 163 aa7.41□□□□□ -1.22
CLK3-226ENST00000569406 A0A096LPF7 62 aa7.41□□□□□ -1.22
CLK3-226ENST00000569406 DEFB130BP0DP73 79 aa7.4□□□□□ -1.22
CLK3-226ENST00000569406 DEFB130AP0DP74 79 aa7.4□□□□□ -1.22
CLK3-226ENST00000569406 NOP10Q9NPE3 64 aaKnown RBP7.4□□□□□ -1.22
CLK3-226ENST00000569406 UNC79Q9P2D8 2635 aa7.4□□□□□ -1.22
CLK3-226ENST00000569406 LOC110117498A0A087WWA1 95 aa7.4□□□□□ -1.22
CLK3-226ENST00000569406 TRBV6-4A0A1B0GX49 114 aa7.4□□□□□ -1.22
CLK3-226ENST00000569406 KRTAP1-1Q07627 177 aa7.4□□□□□ -1.22
CLK3-226ENST00000569406 NBEAL2Q6ZNJ1 2754 aa7.4□□□□□ -1.23
CLK3-226ENST00000569406 LINC01554Q52M75 96 aa7.39□□□□□ -1.23
CLK3-226ENST00000569406 LINC00167Q96N53 147 aa7.39□□□□□ -1.23
CLK3-226ENST00000569406 C6orf99Q4VX62 202 aa7.39□□□□□ -1.23
CLK3-226ENST00000569406 TRRAPQ9Y4A5 3859 aa7.38□□□□□ -1.23
CLK3-226ENST00000569406 LIMD2Q9BT23 127 aa7.38□□□□□ -1.23
CLK3-226ENST00000569406 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP7.38□□□□□ -1.23
CLK3-226ENST00000569406 MUC7Q8TAX7 377 aa7.38□□□□□ -1.23
CLK3-226ENST00000569406 GCN1Q92616 2671 aaKnown RBP7.37□□□□□ -1.23
CLK3-226ENST00000569406 SMIM29Q86T20 159 aa7.37□□□□□ -1.23
CLK3-226ENST00000569406 F8P00451 2351 aa7.37□□□□□ -1.23
CLK3-226ENST00000569406 LINC00313P59037 77 aa7.36□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 67.4 ms