RNA–Protein interactions for RNA: ENST00000552237.1

USP44-207, Transcript of ubiquitin specific peptidase 44, humanhuman

TSL 3

Gene USP44, Length 463 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP44-207ENST00000552237 NBASA2RRP1 2371 aa0.03□□□□□ -2.4
USP44-207ENST00000552237 LAMC1P11047 1609 aa0.03□□□□□ -2.4
USP44-207ENST00000552237 LINC00587B1AMM8 73 aa0.03□□□□□ -2.4
USP44-207ENST00000552237 GYPAP02724 150 aa0.03□□□□□ -2.4
USP44-207ENST00000552237 ASIPP42127 132 aa0.03□□□□□ -2.4
USP44-207ENST00000552237 RBP2P50120 134 aa0.03□□□□□ -2.4
USP44-207ENST00000552237 PLGLAQ15195 96 aa0.03□□□□□ -2.4
USP44-207ENST00000552237 DEFB135Q30KP9 77 aa0.03□□□□□ -2.4
USP44-207ENST00000552237 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP0.03□□□□□ -2.41
USP44-207ENST00000552237 CNTLNQ9NXG0 1405 aa0.03□□□□□ -2.41
USP44-207ENST00000552237 CUX1P39880 1505 aa0.03□□□□□ -2.41
USP44-207ENST00000552237 ZFYVE16Q7Z3T8 1539 aa0.03□□□□□ -2.41
USP44-207ENST00000552237 SETXQ7Z333 2677 aaKnown RBP0.02□□□□□ -2.41
USP44-207ENST00000552237 TIAM2Q8IVF5 1701 aa0.02□□□□□ -2.41
USP44-207ENST00000552237 PCNX1Q96RV3 2341 aa0.02□□□□□ -2.41
USP44-207ENST00000552237 RGPD3A6NKT7 1758 aaPredicted RBP0.02□□□□□ -2.41
USP44-207ENST00000552237 RGPD8O14715 1765 aaPredicted RBP0.02□□□□□ -2.41
USP44-207ENST00000552237 RGPD5Q99666 1765 aa0.02□□□□□ -2.41
USP44-207ENST00000552237 SPG11Q96JI7 2443 aa0.02□□□□□ -2.41
USP44-207ENST00000552237 M0R143 59 aa0.02□□□□□ -2.41
USP44-207ENST00000552237 S100A8P05109 93 aa0.02□□□□□ -2.41
USP44-207ENST00000552237 DEFB112Q30KQ8 113 aa0.02□□□□□ -2.41
USP44-207ENST00000552237 LCN9Q8WX39 176 aa0.02□□□□□ -2.41
USP44-207ENST00000552237 UBE2D4Q9Y2X8 147 aa0.02□□□□□ -2.41
USP44-207ENST00000552237 LRP1Q07954 4544 aaKnown RBP0.02□□□□□ -2.41
USP44-207ENST00000552237 TEX14Q8IWB6 1497 aa0.02□□□□□ -2.41
USP44-207ENST00000552237 EPRSP07814 1512 aaKnown RBP0.02□□□□□ -2.41
USP44-207ENST00000552237 MARF1Q9Y4F3 1742 aaKnown RBP0.01□□□□□ -2.41
USP44-207ENST00000552237 NDUFB1O75438 58 aa0.01□□□□□ -2.41
USP44-207ENST00000552237 KLK9Q2XQG4 91 aa0.01□□□□□ -2.41
USP44-207ENST00000552237 C9orf62Q8N4C0 152 aa0.01□□□□□ -2.41
USP44-207ENST00000552237 HIGD1BQ9P298 99 aa0.01□□□□□ -2.41
USP44-207ENST00000552237 FANCAO15360 1455 aa0.01□□□□□ -2.41
USP44-207ENST00000552237 PRDM15P57071 1507 aaPredicted RBP0.01□□□□□ -2.41
USP44-207ENST00000552237 QSER1Q2KHR3 1735 aa0.01□□□□□ -2.41
USP44-207ENST00000552237 ANK2Q01484 3957 aa0.01□□□□□ -2.41
USP44-207ENST00000552237 STAB1Q9NY15 2570 aa0□□□□□ -2.41
USP44-207ENST00000552237 NBEAL1Q6ZS30 2694 aa0□□□□□ -2.41
USP44-207ENST00000552237 A0A1B0GUT8 65 aa0□□□□□ -2.41
USP44-207ENST00000552237 NKTRP30414 1462 aaKnown RBP0□□□□□ -2.41
USP44-207ENST00000552237 SPRR2BP35325 72 aa0□□□□□ -2.41
USP44-207ENST00000552237 NCMAPQ5T1S8 102 aa0□□□□□ -2.41
USP44-207ENST00000552237 COX6B2Q6YFQ2 88 aa0□□□□□ -2.41
USP44-207ENST00000552237 LRRC9Q6ZRR7 1453 aa0□□□□□ -2.41
USP44-207ENST00000552237 ANKRD36BQ8N2N9 1353 aa0□□□□□ -2.41
USP44-207ENST00000552237 MRPL34Q9BQ48 92 aaKnown RBP0□□□□□ -2.41
USP44-207ENST00000552237 NCOA3Q9Y6Q9 1424 aa0□□□□□ -2.41
USP44-207ENST00000552237 CREBBPQ92793 2442 aa-0.01□□□□□ -2.41
USP44-207ENST00000552237 SUPT6HQ7KZ85 1726 aaKnown RBP-0.01□□□□□ -2.41
USP44-207ENST00000552237 ATP10BO94823 1461 aa-0.01□□□□□ -2.41
USP44-207ENST00000552237 SETD2Q9BYW2 2564 aaPredicted RBP-0.01□□□□□ -2.41
USP44-207ENST00000552237 F8WEM9 126 aa-0.01□□□□□ -2.41
USP44-207ENST00000552237 H7BZZ5 65 aa-0.01□□□□□ -2.41
USP44-207ENST00000552237 KRTAP6-1Q3LI64 71 aa-0.01□□□□□ -2.41
USP44-207ENST00000552237 H1FX-AS1Q4G0G2 97 aa-0.01□□□□□ -2.41
USP44-207ENST00000552237 DSTQ03001 7570 aaKnown RBP-0.01□□□□□ -2.41
USP44-207ENST00000552237 LTN1O94822 1766 aa-0.01□□□□□ -2.41
USP44-207ENST00000552237 SAMD9Q5K651 1589 aa-0.02□□□□□ -2.41
USP44-207ENST00000552237 TENM2Q9NT68 2774 aa-0.02□□□□□ -2.41
USP44-207ENST00000552237 IQCF6A8MYZ5 107 aa-0.02□□□□□ -2.41
USP44-207ENST00000552237 PRM1P04553 51 aa-0.02□□□□□ -2.41
USP44-207ENST00000552237 HMGN2P05204 90 aaKnown RBP-0.02□□□□□ -2.41
USP44-207ENST00000552237 PKIAP61925 76 aa-0.02□□□□□ -2.41
USP44-207ENST00000552237 C14orf144Q96I85 54 aa-0.02□□□□□ -2.41
USP44-207ENST00000552237 GAFA1Q96PS6 74 aa-0.02□□□□□ -2.41
USP44-207ENST00000552237 ANKRD26Q9UPS8 1709 aa-0.02□□□□□ -2.41
USP44-207ENST00000552237 PREX1Q8TCU6 1659 aa-0.02□□□□□ -2.41
USP44-207ENST00000552237 CSMD3Q7Z407 3707 aa-0.02□□□□□ -2.41
USP44-207ENST00000552237 COL6A3P12111 3177 aa-0.02□□□□□ -2.41
USP44-207ENST00000552237 ACACAQ13085 2346 aa-0.03□□□□□ -2.41
USP44-207ENST00000552237 EPG5Q9HCE0 2579 aa-0.03□□□□□ -2.41
USP44-207ENST00000552237 MT-ATP8P03928 68 aa-0.03□□□□□ -2.41
USP44-207ENST00000552237 IGLC2P0DOY2 106 aa-0.03□□□□□ -2.41
USP44-207ENST00000552237 IGLC3P0DOY3 106 aa-0.03□□□□□ -2.41
USP44-207ENST00000552237 COX7BP24311 80 aa-0.03□□□□□ -2.41
USP44-207ENST00000552237 WFDC9Q8NEX5 89 aa-0.03□□□□□ -2.41
USP44-207ENST00000552237 RABAC1Q9UI14 185 aa-0.03□□□□□ -2.41
USP44-207ENST00000552237 MYO3AQ8NEV4 1616 aa-0.03□□□□□ -2.41
USP44-207ENST00000552237 SRRM2Q9UQ35 2752 aaKnown RBP-0.03□□□□□ -2.41
USP44-207ENST00000552237 SLIT1O75093 1534 aa-0.03□□□□□ -2.41
USP44-207ENST00000552237 VPS8Q8N3P4 1428 aa-0.04□□□□□ -2.42
USP44-207ENST00000552237 CCNB3Q8WWL7 1395 aa-0.04□□□□□ -2.42
USP44-207ENST00000552237 ALKQ9UM73 1620 aa-0.04□□□□□ -2.42
USP44-207ENST00000552237 KANTRA0A1W2PQU2 76 aa-0.04□□□□□ -2.42
USP44-207ENST00000552237 ACYP1P07311 99 aa-0.04□□□□□ -2.42
USP44-207ENST00000552237 C3orf79P0CE67 100 aa-0.04□□□□□ -2.42
USP44-207ENST00000552237 HMGA1P17096 107 aaKnown RBP-0.04□□□□□ -2.42
USP44-207ENST00000552237 SNRPFP62306 86 aaKnown RBP-0.04□□□□□ -2.42
USP44-207ENST00000552237 WFDC13Q8IUB5 93 aa-0.04□□□□□ -2.42
USP44-207ENST00000552237 V9GYS6 101 aa-0.04□□□□□ -2.42
USP44-207ENST00000552237 PPLO60437 1756 aa-0.04□□□□□ -2.42
USP44-207ENST00000552237 COL4A6Q14031 1691 aa-0.05□□□□□ -2.42
USP44-207ENST00000552237 SPTBN4Q9H254 2564 aa-0.05□□□□□ -2.42
USP44-207ENST00000552237 PVALEFA0A1B0GWK0 134 aa-0.05□□□□□ -2.42
USP44-207ENST00000552237 IFI27P40305 119 aaPredicted RBP-0.05□□□□□ -2.42
USP44-207ENST00000552237 PYY3Q5JQD4 70 aa-0.05□□□□□ -2.42
USP44-207ENST00000552237 LRRC7Q96NW7 1537 aa-0.05□□□□□ -2.42
USP44-207ENST00000552237 TNRC6CQ9HCJ0 1690 aaKnown RBP-0.05□□□□□ -2.42
USP44-207ENST00000552237 HUWE1Q7Z6Z7 4374 aaKnown RBP-0.06□□□□□ -2.42
USP44-207ENST00000552237 PLIN4Q96Q06 1357 aa-0.06□□□□□ -2.42
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms