RNA–Protein interactions for RNA: ENST00000552237.1

USP44-207, Transcript of ubiquitin specific peptidase 44, humanhuman

TSL 3

Gene USP44, Length 463 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP44-207ENST00000552237 AEBP2Q6ZN18 517 aaPredicted RBP28.66■■■□□ 2.18
USP44-207ENST00000552237 CHIC1Q5VXU3 224 aa27.1■■□□□ 1.93
USP44-207ENST00000552237 SENP3Q9H4L4 574 aaPredicted RBP24.6■■□□□ 1.53
USP44-207ENST00000552237 PHF23Q9BUL5 403 aaPredicted RBP24.21■■□□□ 1.47
USP44-207ENST00000552237 FOXD1Q16676 465 aa22.88■■□□□ 1.25
USP44-207ENST00000552237 PLPPR3Q6T4P5 718 aa21.64■■□□□ 1.05
USP44-207ENST00000552237 MSH5O43196 834 aa21.56■■□□□ 1.04
USP44-207ENST00000552237 PIAS4Q8N2W9 510 aaPredicted RBP21.43■■□□□ 1.02
USP44-207ENST00000552237 POTEDQ86YR6 584 aa21.29■■□□□ 1
USP44-207ENST00000552237 PPP6R1Q9UPN7 881 aa21.21■□□□□ 0.99
USP44-207ENST00000552237 ADRA2BP18089 450 aa21.19■□□□□ 0.98
USP44-207ENST00000552237 SCAF1Q9H7N4 1312 aaKnown RBP19.5■□□□□ 0.71
USP44-207ENST00000552237 MAPK8IP2Q13387 824 aaPredicted RBP19.49■□□□□ 0.71
USP44-207ENST00000552237 DMRT2Q9Y5R5 561 aa19.44■□□□□ 0.7
USP44-207ENST00000552237 PPP4R3CPQ6ZMV5 832 aa18.92■□□□□ 0.62
USP44-207ENST00000552237 DCAF8L1A6NGE4 600 aa18.8■□□□□ 0.6
USP44-207ENST00000552237 CACNB1Q02641 598 aaPredicted RBP18.65■□□□□ 0.58
USP44-207ENST00000552237 HOXD11P31277 338 aaPredicted RBP18.62■□□□□ 0.57
USP44-207ENST00000552237 CNKSR2Q8WXI2 1034 aa18.62■□□□□ 0.57
USP44-207ENST00000552237 RNF216Q9NWF9 866 aaPredicted RBP18.48■□□□□ 0.55
USP44-207ENST00000552237 RNF39Q9H2S5 420 aa18.32■□□□□ 0.52
USP44-207ENST00000552237 NCBP3Q53F19 620 aaKnown RBP18.21■□□□□ 0.51
USP44-207ENST00000552237 C1QBPQ07021 282 aaKnown RBP18.08■□□□□ 0.48
USP44-207ENST00000552237 DNAJC5BQ9UF47 199 aa18■□□□□ 0.47
USP44-207ENST00000552237 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.87■□□□□ 0.45
USP44-207ENST00000552237 NPM3O75607 178 aaKnown RBP17.86■□□□□ 0.45
USP44-207ENST00000552237 U3KPZ7 1027 aaPredicted RBP17.38■□□□□ 0.37
USP44-207ENST00000552237 KCNA4P22459 653 aa17.36■□□□□ 0.37
USP44-207ENST00000552237 CAPN15O75808 1086 aa17.26■□□□□ 0.35
USP44-207ENST00000552237 SPINK5Q9NQ38 1064 aaPredicted RBP17.19■□□□□ 0.34
USP44-207ENST00000552237 DSG3P32926 999 aa17.1■□□□□ 0.33
USP44-207ENST00000552237 SLC4A2P04920 1241 aa17.05■□□□□ 0.32
USP44-207ENST00000552237 APLP2Q06481 763 aa17.02■□□□□ 0.32
USP44-207ENST00000552237 TRHP20396 242 aaPredicted RBP16.94■□□□□ 0.3
USP44-207ENST00000552237 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.93■□□□□ 0.3
USP44-207ENST00000552237 HNRNPUL2Q1KMD3 747 aaKnown RBP16.93■□□□□ 0.3
USP44-207ENST00000552237 ZNF219Q9P2Y4 722 aaPredicted RBP16.89■□□□□ 0.29
USP44-207ENST00000552237 ABCB7O75027 752 aa16.83■□□□□ 0.28
USP44-207ENST00000552237 SAMD1Q6SPF0 538 aaPredicted RBP16.8■□□□□ 0.28
USP44-207ENST00000552237 POTEHQ6S545 545 aa16.69■□□□□ 0.26
USP44-207ENST00000552237 MYCNP04198 464 aaPredicted RBP16.58■□□□□ 0.24
USP44-207ENST00000552237 RBM42Q9BTD8 480 aaKnown RBP16.42■□□□□ 0.22
USP44-207ENST00000552237 SLC4A1APQ9BWU0 796 aaKnown RBP16.41■□□□□ 0.22
USP44-207ENST00000552237 POLA2Q14181 598 aa16.4■□□□□ 0.22
USP44-207ENST00000552237 FOXD4L1Q9NU39 408 aa16.29■□□□□ 0.2
USP44-207ENST00000552237 ATF5Q9Y2D1 282 aaPredicted RBP16.12■□□□□ 0.17
USP44-207ENST00000552237 ZBTB12Q9Y330 459 aaPredicted RBP16.11■□□□□ 0.17
USP44-207ENST00000552237 CHRDL2Q6WN34 429 aa16.08■□□□□ 0.16
USP44-207ENST00000552237 AKT1S1Q96B36 256 aa15.95■□□□□ 0.14
USP44-207ENST00000552237 ZBTB22O15209 634 aa15.89■□□□□ 0.13
USP44-207ENST00000552237 OSCARQ8IYS5 282 aa15.89■□□□□ 0.13
USP44-207ENST00000552237 ATXN8OSP0DMR3 200 aa15.79■□□□□ 0.12
USP44-207ENST00000552237 REM2Q8IYK8 340 aaPredicted RBP15.78■□□□□ 0.12
USP44-207ENST00000552237 FBLN2P98095 1184 aa15.65■□□□□ 0.1
USP44-207ENST00000552237 PIP4P2Q8N4L2 257 aa15.64■□□□□ 0.09
USP44-207ENST00000552237 PITPNM1O00562 1244 aa15.63■□□□□ 0.09
USP44-207ENST00000552237 SP7Q8TDD2 431 aaPredicted RBP15.57■□□□□ 0.08
USP44-207ENST00000552237 SPDYE2BA6NHP3 402 aa15.54■□□□□ 0.08
USP44-207ENST00000552237 SPDYE6P0CI01 402 aa15.54■□□□□ 0.08
USP44-207ENST00000552237 SPDYE2Q495Y8 402 aa15.54■□□□□ 0.08
USP44-207ENST00000552237 FXR2P51116 673 aaKnown RBP eCLIP15.49■□□□□ 0.07
USP44-207ENST00000552237 HAX1O00165 279 aa15.48■□□□□ 0.07
USP44-207ENST00000552237 CLEC11AQ9Y240 323 aa15.37■□□□□ 0.05
USP44-207ENST00000552237 MKRN4PQ13434 485 aaPredicted RBP15.36■□□□□ 0.05
USP44-207ENST00000552237 ZNF692Q9BU19 519 aaPredicted RBP15.36■□□□□ 0.05
USP44-207ENST00000552237 SPDYE1Q8NFV5 336 aaPredicted RBP15.35■□□□□ 0.05
USP44-207ENST00000552237 PRKAR2AP13861 404 aaKnown RBP15.26■□□□□ 0.03
USP44-207ENST00000552237 SSUH2Q9Y2M2 353 aa15.26■□□□□ 0.03
USP44-207ENST00000552237 EVX2Q03828 476 aa15.13■□□□□ 0.01
USP44-207ENST00000552237 PABPN1Q86U42 306 aaKnown RBP eCLIP15.11■□□□□ 0.01
USP44-207ENST00000552237 PRR29P0C7W0 189 aa15.07■□□□□ 0
USP44-207ENST00000552237 CHADLQ6NUI6 762 aa15.03■□□□□ -0
USP44-207ENST00000552237 CSRNP3Q8WYN3 585 aa15.02■□□□□ -0
USP44-207ENST00000552237 C19orf67A6NJJ6 358 aa15□□□□□ -0.01
USP44-207ENST00000552237 EHMT2Q96KQ7 1210 aa14.86□□□□□ -0.03
USP44-207ENST00000552237 GABBR2O75899 941 aa14.85□□□□□ -0.03
USP44-207ENST00000552237 FARP1Q9Y4F1 1045 aaPredicted RBP14.78□□□□□ -0.04
USP44-207ENST00000552237 CD44P16070 742 aaKnown RBP14.77□□□□□ -0.05
USP44-207ENST00000552237 STAG3Q9UJ98 1225 aa14.69□□□□□ -0.06
USP44-207ENST00000552237 SPDYE4A6NLX3 237 aa14.64□□□□□ -0.07
USP44-207ENST00000552237 LHX8Q68G74 356 aa14.6□□□□□ -0.07
USP44-207ENST00000552237 CLCN6P51797 869 aa14.59□□□□□ -0.07
USP44-207ENST00000552237 CREBZFQ9NS37 354 aa14.56□□□□□ -0.08
USP44-207ENST00000552237 ZRANB1Q9UGI0 708 aa14.55□□□□□ -0.08
USP44-207ENST00000552237 DCBLD2Q96PD2 775 aa14.51□□□□□ -0.09
USP44-207ENST00000552237 ZNF579Q8NAF0 562 aaKnown RBP14.49□□□□□ -0.09
USP44-207ENST00000552237 PAK3O75914 559 aaPredicted RBP14.47□□□□□ -0.09
USP44-207ENST00000552237 POTEIP0CG38 1075 aa14.46□□□□□ -0.09
USP44-207ENST00000552237 NPM1P06748 294 aaKnown RBP eCLIP14.4□□□□□ -0.1
USP44-207ENST00000552237 GALR2O43603 387 aaPredicted RBP14.33□□□□□ -0.12
USP44-207ENST00000552237 PHF12Q96QT6 1004 aa14.29□□□□□ -0.12
USP44-207ENST00000552237 MNX1P50219 401 aaPredicted RBP14.23□□□□□ -0.13
USP44-207ENST00000552237 PLEKHG5O94827 1062 aa14.13□□□□□ -0.15
USP44-207ENST00000552237 PROM2Q8N271 834 aa14.13□□□□□ -0.15
USP44-207ENST00000552237 TSPYL2Q9H2G4 693 aaPredicted RBP14.11□□□□□ -0.15
USP44-207ENST00000552237 MS4A3Q96HJ5 214 aa14.09□□□□□ -0.15
USP44-207ENST00000552237 MIER1Q8N108 512 aa14.03□□□□□ -0.16
USP44-207ENST00000552237 PELP1Q8IZL8 1130 aaKnown RBP14.01□□□□□ -0.17
USP44-207ENST00000552237 OTUD5Q96G74 571 aa14.01□□□□□ -0.17
USP44-207ENST00000552237 ASTLQ6HA08 431 aaPredicted RBP14□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms