RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 LY6G6DO95868 133 aa10.05□□□□□ -0.8
LIMS1-215ENST00000544547 IGKV2-28A0A075B6P5 120 aa10.05□□□□□ -0.8
LIMS1-215ENST00000544547 IGKV2D-28P01615 120 aa10.05□□□□□ -0.8
LIMS1-215ENST00000544547 IGLV5-45A0A087WSX0 123 aa10.04□□□□□ -0.8
LIMS1-215ENST00000544547 ODF3L2Q3SX64 289 aa10.04□□□□□ -0.8
LIMS1-215ENST00000544547 NANOS2P60321 138 aaKnown RBP10.04□□□□□ -0.8
LIMS1-215ENST00000544547 C14orf177Q52M58 125 aa10.04□□□□□ -0.8
LIMS1-215ENST00000544547 FAM30AQ9NZY2 134 aa10.03□□□□□ -0.8
LIMS1-215ENST00000544547 IGLV2-33A0A075B6J2 118 aaPredicted RBP10.03□□□□□ -0.8
LIMS1-215ENST00000544547 UNQ6190/PRO20217Q6UXQ8 127 aa10.03□□□□□ -0.8
LIMS1-215ENST00000544547 SYCNQ0VAF6 134 aa10.03□□□□□ -0.8
LIMS1-215ENST00000544547 TRAV10A0A0B4J240 114 aa10.02□□□□□ -0.81
LIMS1-215ENST00000544547 LINC00336Q6ZUF6 198 aa10.02□□□□□ -0.81
LIMS1-215ENST00000544547 IL17DQ8TAD2 202 aa10.02□□□□□ -0.81
LIMS1-215ENST00000544547 TMEM254Q8TBM7 123 aa10.02□□□□□ -0.81
LIMS1-215ENST00000544547 B9D2Q9BPU9 175 aa10.02□□□□□ -0.81
LIMS1-215ENST00000544547 CHKB-CPT1BH3BT56 60 aa10.01□□□□□ -0.81
LIMS1-215ENST00000544547 BEAN1Q3B7T3 259 aa10.01□□□□□ -0.81
LIMS1-215ENST00000544547 ATP5EP56381 51 aaPredicted RBP10.01□□□□□ -0.81
LIMS1-215ENST00000544547 Q8IZM0 81 aa10.01□□□□□ -0.81
LIMS1-215ENST00000544547 COL12A1Q99715 3063 aa10.01□□□□□ -0.81
LIMS1-215ENST00000544547 PSPHP1O15172 72 aa10□□□□□ -0.81
LIMS1-215ENST00000544547 KRTAP10-9P60411 292 aa10□□□□□ -0.81
LIMS1-215ENST00000544547 C11orf72Q8NBR9 251 aa10□□□□□ -0.81
LIMS1-215ENST00000544547 C2orf48Q96LS8 159 aa10□□□□□ -0.81
LIMS1-215ENST00000544547 KPRPQ5T749 579 aaPredicted RBP10□□□□□ -0.81
LIMS1-215ENST00000544547 CD164L2Q6UWJ8 174 aa9.99□□□□□ -0.81
LIMS1-215ENST00000544547 IGHV3OR16-9A0A0B4J2B5 98 aa9.99□□□□□ -0.81
LIMS1-215ENST00000544547 CYSTM1Q9H1C7 97 aa9.99□□□□□ -0.81
LIMS1-215ENST00000544547 TRBV10-3A0A0K0K1G6 114 aa9.98□□□□□ -0.81
LIMS1-215ENST00000544547 LINC00474Q9P2X8 69 aa9.98□□□□□ -0.81
LIMS1-215ENST00000544547 OXLD1Q5BKU9 147 aa9.97□□□□□ -0.81
LIMS1-215ENST00000544547 CYSRT1A8MQ03 144 aa9.97□□□□□ -0.81
LIMS1-215ENST00000544547 PRYO14603 147 aa9.97□□□□□ -0.81
LIMS1-215ENST00000544547 ZNF73O43830 326 aaPredicted RBP9.97□□□□□ -0.81
LIMS1-215ENST00000544547 TM2D3Q9BRN9 247 aa9.96□□□□□ -0.81
LIMS1-215ENST00000544547 C6orf223Q8N319 242 aa9.96□□□□□ -0.81
LIMS1-215ENST00000544547 LINC00575Q6W349 94 aa9.96□□□□□ -0.82
LIMS1-215ENST00000544547 SEC61GP60059 68 aa9.95□□□□□ -0.82
LIMS1-215ENST00000544547 MRPL55Q7Z7F7 128 aaKnown RBP9.95□□□□□ -0.82
LIMS1-215ENST00000544547 SMR3AQ99954 134 aa9.95□□□□□ -0.82
LIMS1-215ENST00000544547 LELP1Q5T871 98 aa9.95□□□□□ -0.82
LIMS1-215ENST00000544547 MUC7Q8TAX7 377 aa9.95□□□□□ -0.82
LIMS1-215ENST00000544547 ASH1LQ9NR48 2969 aaKnown RBP9.94□□□□□ -0.82
LIMS1-215ENST00000544547 IGKV4-1P06312 121 aa9.94□□□□□ -0.82
LIMS1-215ENST00000544547 WFDC13Q8IUB5 93 aa9.93□□□□□ -0.82
LIMS1-215ENST00000544547 HECTD1Q9ULT8 2610 aa9.93□□□□□ -0.82
LIMS1-215ENST00000544547 WFDC10BQ8IUB3 73 aa9.92□□□□□ -0.82
LIMS1-215ENST00000544547 RELNP78509 3460 aa9.92□□□□□ -0.82
LIMS1-215ENST00000544547 COX17Q14061 63 aa9.92□□□□□ -0.82
LIMS1-215ENST00000544547 ESRGQ1W209 222 aa9.92□□□□□ -0.82
LIMS1-215ENST00000544547 KLK9Q2XQG4 91 aa9.92□□□□□ -0.82
LIMS1-215ENST00000544547 PMAIP1Q13794 54 aa9.91□□□□□ -0.82
LIMS1-215ENST00000544547 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP9.91□□□□□ -0.82
LIMS1-215ENST00000544547 IGHV4-30-4P0DP06 118 aa9.91□□□□□ -0.82
LIMS1-215ENST00000544547 SPATA3Q8NHX4 192 aa9.9□□□□□ -0.82
LIMS1-215ENST00000544547 A0A0J9YWU9 116 aa9.89□□□□□ -0.83
LIMS1-215ENST00000544547 LINC01600Q96MT4 127 aa9.89□□□□□ -0.83
LIMS1-215ENST00000544547 SMG1Q96Q15 3661 aaKnown RBP9.89□□□□□ -0.83
LIMS1-215ENST00000544547 M0R2N4 97 aa9.89□□□□□ -0.83
LIMS1-215ENST00000544547 Q6ZQT0 140 aa9.88□□□□□ -0.83
LIMS1-215ENST00000544547 FLNCQ14315 2725 aa9.87□□□□□ -0.83
LIMS1-215ENST00000544547 M0R378 163 aa9.87□□□□□ -0.83
LIMS1-215ENST00000544547 H7BZZ5 65 aa9.87□□□□□ -0.83
LIMS1-215ENST00000544547 IGLV1-51P01701 117 aa9.87□□□□□ -0.83
LIMS1-215ENST00000544547 RETNQ9HD89 108 aa9.86□□□□□ -0.83
LIMS1-215ENST00000544547 FLNAP21333 2647 aaKnown RBP9.86□□□□□ -0.83
LIMS1-215ENST00000544547 RPL37AP8A6NKH3 93 aa9.86□□□□□ -0.83
LIMS1-215ENST00000544547 CXCL6P80162 114 aa9.86□□□□□ -0.83
LIMS1-215ENST00000544547 CHD6Q8TD26 2715 aa9.85□□□□□ -0.83
LIMS1-215ENST00000544547 FAM104AQ969W3 186 aa9.85□□□□□ -0.83
LIMS1-215ENST00000544547 SPINK6Q6UWN8 80 aa9.84□□□□□ -0.83
LIMS1-215ENST00000544547 A6NED7 52 aa9.84□□□□□ -0.83
LIMS1-215ENST00000544547 ITPR1Q14643 2758 aa9.84□□□□□ -0.83
LIMS1-215ENST00000544547 DEFB116Q30KQ4 102 aa9.82□□□□□ -0.84
LIMS1-215ENST00000544547 C10orf25Q5T742 122 aa9.82□□□□□ -0.84
LIMS1-215ENST00000544547 LINC00208Q96KT6 92 aa9.81□□□□□ -0.84
LIMS1-215ENST00000544547 DHRS4-AS1Q9P1J3 65 aa9.81□□□□□ -0.84
LIMS1-215ENST00000544547 C7orf33Q8WU49 177 aa9.8□□□□□ -0.84
LIMS1-215ENST00000544547 OXTP01178 125 aa9.8□□□□□ -0.84
LIMS1-215ENST00000544547 SMIM29Q86T20 159 aa9.8□□□□□ -0.84
LIMS1-215ENST00000544547 ITPR3Q14573 2671 aa9.8□□□□□ -0.84
LIMS1-215ENST00000544547 WIPF1O43516 503 aa9.79□□□□□ -0.84
LIMS1-215ENST00000544547 Q5XG85 94 aa9.79□□□□□ -0.84
LIMS1-215ENST00000544547 CSMD1Q96PZ7 3565 aa9.79□□□□□ -0.84
LIMS1-215ENST00000544547 CASC2Q6XLA1 102 aa9.79□□□□□ -0.84
LIMS1-215ENST00000544547 CFAP46Q8IYW2 2715 aa9.78□□□□□ -0.84
LIMS1-215ENST00000544547 A0A1B0GUV1 79 aa9.78□□□□□ -0.84
LIMS1-215ENST00000544547 KLKP1Q107X0 134 aa9.78□□□□□ -0.84
LIMS1-215ENST00000544547 Q6ZTC4 211 aa9.78□□□□□ -0.84
LIMS1-215ENST00000544547 BCE1O60756 84 aa9.77□□□□□ -0.85
LIMS1-215ENST00000544547 C1orf137Q5JT78 98 aa9.77□□□□□ -0.85
LIMS1-215ENST00000544547 PRR15LQ9BU68 103 aa9.77□□□□□ -0.85
LIMS1-215ENST00000544547 LY6G6CO95867 125 aa9.76□□□□□ -0.85
LIMS1-215ENST00000544547 EGFEM1PQ0D2K5 195 aa9.76□□□□□ -0.85
LIMS1-215ENST00000544547 NBEAL2Q6ZNJ1 2754 aa9.74□□□□□ -0.85
LIMS1-215ENST00000544547 TEX15Q9BXT5 2789 aa9.74□□□□□ -0.85
LIMS1-215ENST00000544547 LOC110117498A0A087WWA1 95 aa9.74□□□□□ -0.85
LIMS1-215ENST00000544547 ZANQ9Y493 2812 aa9.74□□□□□ -0.85
LIMS1-215ENST00000544547 GCN1Q92616 2671 aaKnown RBP9.73□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 816.2 ms