RNA–Protein interactions for RNA: ENST00000495640.1

COPS3-211, Transcript of COP9 signalosome subunit 3, humanhuman

TSL 3

Gene COPS3, Length 333 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS3-211ENST00000495640 D6R8Y8 96 aa0.15□□□□□ -2.39
COPS3-211ENST00000495640 LEPROTL1O95214 131 aa0.15□□□□□ -2.39
COPS3-211ENST00000495640 GNGT1P63211 74 aa0.15□□□□□ -2.39
COPS3-211ENST00000495640 ALKAL2Q6UX46 152 aa0.15□□□□□ -2.39
COPS3-211ENST00000495640 MUSTN1Q8IVN3 82 aa0.15□□□□□ -2.39
COPS3-211ENST00000495640 C9orf62Q8N4C0 152 aa0.15□□□□□ -2.39
COPS3-211ENST00000495640 LRRC37AA6NMS7 1700 aa0.15□□□□□ -2.39
COPS3-211ENST00000495640 KIF20BQ96Q89 1820 aa0.15□□□□□ -2.39
COPS3-211ENST00000495640 NEXMIFQ5QGS0 1516 aa0.14□□□□□ -2.39
COPS3-211ENST00000495640 ALKQ9UM73 1620 aa0.13□□□□□ -2.39
COPS3-211ENST00000495640 K7EP34 96 aa0.13□□□□□ -2.39
COPS3-211ENST00000495640 IGLC2P0DOY2 106 aa0.13□□□□□ -2.39
COPS3-211ENST00000495640 IGLC3P0DOY3 106 aa0.13□□□□□ -2.39
COPS3-211ENST00000495640 GNG2P59768 71 aa0.13□□□□□ -2.39
COPS3-211ENST00000495640 CRIPTQ9P021 101 aa0.13□□□□□ -2.39
COPS3-211ENST00000495640 UBE2D4Q9Y2X8 147 aa0.13□□□□□ -2.39
COPS3-211ENST00000495640 MYCBP2O75592 4640 aa0.13□□□□□ -2.39
COPS3-211ENST00000495640 PKD1L3Q7Z443 1732 aa0.13□□□□□ -2.39
COPS3-211ENST00000495640 HMCN2Q8NDA2 5059 aa0.12□□□□□ -2.39
COPS3-211ENST00000495640 NKTRP30414 1462 aaKnown RBP0.12□□□□□ -2.39
COPS3-211ENST00000495640 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP0.12□□□□□ -2.399e-10■■■■■ 36.7
COPS3-211ENST00000495640 PVALEFA0A1B0GWK0 134 aa0.12□□□□□ -2.39
COPS3-211ENST00000495640 HMGN2P05204 90 aaKnown RBP0.12□□□□□ -2.39
COPS3-211ENST00000495640 USMG5Q96IX5 58 aa0.12□□□□□ -2.39
COPS3-211ENST00000495640 CHD8Q9HCK8 2581 aa0.12□□□□□ -2.39
COPS3-211ENST00000495640 PLIN4Q96Q06 1357 aa0.11□□□□□ -2.39
COPS3-211ENST00000495640 LPAP08519 4548 aa0.11□□□□□ -2.39
COPS3-211ENST00000495640 DCHS2Q6V1P9 2916 aa0.11□□□□□ -2.39
COPS3-211ENST00000495640 RGPD1P0DJD0 1748 aa0.1□□□□□ -2.39
COPS3-211ENST00000495640 TMEM131LA2VDJ0 1609 aa0.1□□□□□ -2.39
COPS3-211ENST00000495640 NMSQ5H8A3 153 aa0.1□□□□□ -2.39
COPS3-211ENST00000495640 HECTD4Q9Y4D8 3996 aa0.1□□□□□ -2.39
COPS3-211ENST00000495640 QSER1Q2KHR3 1735 aa0.1□□□□□ -2.39
COPS3-211ENST00000495640 CCDC141Q6ZP82 1450 aa0.1□□□□□ -2.39
COPS3-211ENST00000495640 COL14A1Q05707 1796 aaKnown RBP0.09□□□□□ -2.39
COPS3-211ENST00000495640 MAP1BP46821 2468 aaKnown RBP0.09□□□□□ -2.39
COPS3-211ENST00000495640 WNK1Q9H4A3 2382 aa0.09□□□□□ -2.39
COPS3-211ENST00000495640 PRM1P04553 51 aa0.09□□□□□ -2.4
COPS3-211ENST00000495640 COX8AP10176 69 aa0.09□□□□□ -2.4
COPS3-211ENST00000495640 SMIM11AP58511 58 aa0.09□□□□□ -2.4
COPS3-211ENST00000495640 PEA15Q15121 130 aa0.09□□□□□ -2.4
COPS3-211ENST00000495640 TDRG1Q3Y452 100 aa0.09□□□□□ -2.4
COPS3-211ENST00000495640 S100A16Q96FQ6 103 aaKnown RBP0.09□□□□□ -2.4
COPS3-211ENST00000495640 RGPD2P0DJD1 1756 aa0.09□□□□□ -2.4
COPS3-211ENST00000495640 ALMS1Q8TCU4 4167 aa0.09□□□□□ -2.4
COPS3-211ENST00000495640 HSPG2P98160 4391 aa0.08□□□□□ -2.4
COPS3-211ENST00000495640 FLNCQ14315 2725 aa0.08□□□□□ -2.4
COPS3-211ENST00000495640 RB1CC1Q8TDY2 1594 aa0.08□□□□□ -2.4
COPS3-211ENST00000495640 IQCF6A8MYZ5 107 aa0.08□□□□□ -2.4
COPS3-211ENST00000495640 KLK9Q2XQG4 91 aa0.08□□□□□ -2.4
COPS3-211ENST00000495640 DEFB105AQ8NG35 78 aa0.08□□□□□ -2.4
COPS3-211ENST00000495640 MED14O60244 1454 aa0.08□□□□□ -2.4
COPS3-211ENST00000495640 ATP7BP35670 1465 aa0.08□□□□□ -2.4
COPS3-211ENST00000495640 KIF14Q15058 1648 aa0.07□□□□□ -2.4
COPS3-211ENST00000495640 CPSF4LA6NMK7 179 aaKnown RBP0.07□□□□□ -2.4
COPS3-211ENST00000495640 CYB5AP00167 134 aa0.07□□□□□ -2.4
COPS3-211ENST00000495640 SETXQ7Z333 2677 aaKnown RBP0.06□□□□□ -2.4
COPS3-211ENST00000495640 UBR3Q6ZT12 1888 aa0.06□□□□□ -2.4
COPS3-211ENST00000495640 DEFB112Q30KQ8 113 aa0.06□□□□□ -2.4
COPS3-211ENST00000495640 CNOT1A5YKK6 2376 aaKnown RBP0.06□□□□□ -2.4
COPS3-211ENST00000495640 MAP3K4Q9Y6R4 1608 aa0.05□□□□□ -2.4
COPS3-211ENST00000495640 EP300Q09472 2414 aaPredicted RBP0.05□□□□□ -2.4
COPS3-211ENST00000495640 MAGI2Q86UL8 1455 aa0.05□□□□□ -2.4
COPS3-211ENST00000495640 I3L3M4 83 aa0.05□□□□□ -2.4
COPS3-211ENST00000495640 APLNQ9ULZ1 77 aa0.05□□□□□ -2.4
COPS3-211ENST00000495640 SUPT6HQ7KZ85 1726 aaKnown RBP0.04□□□□□ -2.4
COPS3-211ENST00000495640 BCORQ6W2J9 1755 aa0.04□□□□□ -2.4
COPS3-211ENST00000495640 MYMXA0A1B0GTQ4 84 aa0.04□□□□□ -2.4
COPS3-211ENST00000495640 SNRPFP62306 86 aaKnown RBP0.04□□□□□ -2.4
COPS3-211ENST00000495640 PLGLAQ15195 96 aa0.04□□□□□ -2.4
COPS3-211ENST00000495640 MRPL34Q9BQ48 92 aaKnown RBP0.04□□□□□ -2.4
COPS3-211ENST00000495640 RABAC1Q9UI14 185 aa0.04□□□□□ -2.4
COPS3-211ENST00000495640 FLNAP21333 2647 aaKnown RBP0.03□□□□□ -2.4
COPS3-211ENST00000495640 SPTY2D1-AS1A0A0U1RR47 76 aa0.03□□□□□ -2.4
COPS3-211ENST00000495640 SPINK4O60575 86 aa0.03□□□□□ -2.4
COPS3-211ENST00000495640 SPRR2DP22532 72 aa0.03□□□□□ -2.4
COPS3-211ENST00000495640 H1FX-AS1Q4G0G2 97 aa0.03□□□□□ -2.4
COPS3-211ENST00000495640 LINC00643Q86TS7 51 aa0.03□□□□□ -2.4
COPS3-211ENST00000495640 FXYD6Q9H0Q3 95 aa0.03□□□□□ -2.4
COPS3-211ENST00000495640 NSD1Q96L73 2696 aaPredicted RBP0.03□□□□□ -2.4
COPS3-211ENST00000495640 KNL1Q8NG31 2342 aa0.03□□□□□ -2.41
COPS3-211ENST00000495640 LRRC7Q96NW7 1537 aa0.03□□□□□ -2.41
COPS3-211ENST00000495640 ZNF831Q5JPB2 1677 aa0.02□□□□□ -2.41
COPS3-211ENST00000495640 A0A1B0GUT8 65 aa0.02□□□□□ -2.41
COPS3-211ENST00000495640 UACAQ9BZF9 1416 aa0.02□□□□□ -2.41
COPS3-211ENST00000495640 APC2O95996 2303 aa0.02□□□□□ -2.41
COPS3-211ENST00000495640 COX7BP24311 80 aa0.01□□□□□ -2.41
COPS3-211ENST00000495640 LELP1Q5T871 98 aa0.01□□□□□ -2.41
COPS3-211ENST00000495640 USP32Q8NFA0 1604 aa0.01□□□□□ -2.41
COPS3-211ENST00000495640 POLR1AO95602 1720 aaPredicted RBP0.01□□□□□ -2.41
COPS3-211ENST00000495640 LTN1O94822 1766 aa0□□□□□ -2.41
COPS3-211ENST00000495640 TENM2Q9NT68 2774 aa0□□□□□ -2.41
COPS3-211ENST00000495640 DIP2BQ9P265 1576 aa-0.01□□□□□ -2.41
COPS3-211ENST00000495640 LRRC9Q6ZRR7 1453 aa-0.01□□□□□ -2.41
COPS3-211ENST00000495640 TRANK1O15050 2925 aa-0.01□□□□□ -2.41
COPS3-211ENST00000495640 DOT1LQ8TEK3 1739 aa-0.01□□□□□ -2.41
COPS3-211ENST00000495640 PREX1Q8TCU6 1659 aa-0.02□□□□□ -2.41
COPS3-211ENST00000495640 COL6A3P12111 3177 aa-0.02□□□□□ -2.41
COPS3-211ENST00000495640 CLIP1P30622 1438 aa-0.02□□□□□ -2.41
COPS3-211ENST00000495640 LRP2P98164 4655 aa-0.02□□□□□ -2.41
Retrieved 100 of 20,778 RNA–protein pairs in 88.2 ms