RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 FHL2Q14192 279 aa7.61□□□□□ -1.19
MSH5-SAPCD1-207ENST00000493662 MIFP14174 115 aa7.61□□□□□ -1.19
MSH5-SAPCD1-207ENST00000493662 NREPQ16612 68 aa7.61□□□□□ -1.19
MSH5-SAPCD1-207ENST00000493662 PRO0255Q9UI72 69 aa7.61□□□□□ -1.19
MSH5-SAPCD1-207ENST00000493662 PDZD2O15018 2839 aa7.6□□□□□ -1.19
MSH5-SAPCD1-207ENST00000493662 TRBV7-6A0A0J9YX20 115 aa7.6□□□□□ -1.19
MSH5-SAPCD1-207ENST00000493662 KRTAP10-3P60369 221 aa7.6□□□□□ -1.19
MSH5-SAPCD1-207ENST00000493662 LINC00242Q5T6M2 205 aa7.6□□□□□ -1.19
MSH5-SAPCD1-207ENST00000493662 SPTSSBQ8NFR3 76 aa7.6□□□□□ -1.19
MSH5-SAPCD1-207ENST00000493662 FAM218AQ96MZ4 157 aa7.6□□□□□ -1.19
MSH5-SAPCD1-207ENST00000493662 IGKV2D-24A0A075B6R9 120 aa7.59□□□□□ -1.19
MSH5-SAPCD1-207ENST00000493662 EIF4EBP3O60516 100 aaPredicted RBP7.59□□□□□ -1.19
MSH5-SAPCD1-207ENST00000493662 COX6A2Q02221 97 aa7.59□□□□□ -1.19
MSH5-SAPCD1-207ENST00000493662 IGLV4-60A0A075B6I1 120 aa7.59□□□□□ -1.19
MSH5-SAPCD1-207ENST00000493662 LRCOL1A6NCL2 159 aa7.59□□□□□ -1.19
MSH5-SAPCD1-207ENST00000493662 CCL18P55774 89 aa7.59□□□□□ -1.19
MSH5-SAPCD1-207ENST00000493662 C11orf72Q8NBR9 251 aa7.59□□□□□ -1.19
MSH5-SAPCD1-207ENST00000493662 PDE6GP18545 87 aa7.59□□□□□ -1.2
MSH5-SAPCD1-207ENST00000493662 Q8N3U1 123 aa7.59□□□□□ -1.2
MSH5-SAPCD1-207ENST00000493662 SMIM1B2RUZ4 78 aa7.58□□□□□ -1.2
MSH5-SAPCD1-207ENST00000493662 IBA57-AS1B1ANH7 110 aa7.58□□□□□ -1.2
MSH5-SAPCD1-207ENST00000493662 C6orf99Q4VX62 202 aa7.58□□□□□ -1.2
MSH5-SAPCD1-207ENST00000493662 HIGD2BQ4VC39 106 aa7.58□□□□□ -1.2
MSH5-SAPCD1-207ENST00000493662 LITAFQ99732 161 aa7.58□□□□□ -1.2
MSH5-SAPCD1-207ENST00000493662 TRBV6-8A0A0A6YYG3 113 aa7.56□□□□□ -1.2
MSH5-SAPCD1-207ENST00000493662 TRBV10-1A0A0K0K1A3 114 aa7.56□□□□□ -1.2
MSH5-SAPCD1-207ENST00000493662 LINC00337Q8N6G1 96 aa7.56□□□□□ -1.2
MSH5-SAPCD1-207ENST00000493662 UBE2DNLQ8IWF7 75 aa7.56□□□□□ -1.2
MSH5-SAPCD1-207ENST00000493662 CHCHD7Q9BUK0 85 aa7.56□□□□□ -1.2
MSH5-SAPCD1-207ENST00000493662 NANOS2P60321 138 aaKnown RBP7.56□□□□□ -1.2
MSH5-SAPCD1-207ENST00000493662 LINC01561Q8N1V8 128 aa7.56□□□□□ -1.2
MSH5-SAPCD1-207ENST00000493662 C2orf48Q96LS8 159 aa7.55□□□□□ -1.2
MSH5-SAPCD1-207ENST00000493662 CELA1Q9UNI1 258 aa7.55□□□□□ -1.2
MSH5-SAPCD1-207ENST00000493662 ZNF561-AS1K7EIQ3 104 aa7.55□□□□□ -1.2
MSH5-SAPCD1-207ENST00000493662 C16orf95Q9H693 158 aa7.54□□□□□ -1.2
MSH5-SAPCD1-207ENST00000493662 F8WDY8 70 aa7.54□□□□□ -1.2
MSH5-SAPCD1-207ENST00000493662 FAM19A3Q7Z5A8 133 aa7.54□□□□□ -1.2
MSH5-SAPCD1-207ENST00000493662 BPY2O14599 106 aa7.54□□□□□ -1.2
MSH5-SAPCD1-207ENST00000493662 KLK9Q2XQG4 91 aa7.54□□□□□ -1.2
MSH5-SAPCD1-207ENST00000493662 KRTAP24-1Q3LI83 254 aa7.54□□□□□ -1.2
MSH5-SAPCD1-207ENST00000493662 NTM-AS1Q6ZSK4 140 aa7.54□□□□□ -1.2
MSH5-SAPCD1-207ENST00000493662 PRR4Q16378 134 aa7.53□□□□□ -1.2
MSH5-SAPCD1-207ENST00000493662 DEFB105AQ8NG35 78 aa7.53□□□□□ -1.2
MSH5-SAPCD1-207ENST00000493662 PMAIP1Q13794 54 aa7.53□□□□□ -1.2
MSH5-SAPCD1-207ENST00000493662 A0A0J9YWU9 116 aa7.52□□□□□ -1.2
MSH5-SAPCD1-207ENST00000493662 C9orf116Q5BN46 136 aaPredicted RBP7.52□□□□□ -1.2
MSH5-SAPCD1-207ENST00000493662 Q6ZQY7 126 aa7.52□□□□□ -1.21
MSH5-SAPCD1-207ENST00000493662 Q6ZTC4 211 aa7.52□□□□□ -1.21
MSH5-SAPCD1-207ENST00000493662 XAGE1AQ9HD64 81 aa7.52□□□□□ -1.21
MSH5-SAPCD1-207ENST00000493662 REG3AQ06141 175 aa7.52□□□□□ -1.21
MSH5-SAPCD1-207ENST00000493662 C11orf45Q8TAV5 145 aa7.52□□□□□ -1.21
MSH5-SAPCD1-207ENST00000493662 STAB2Q8WWQ8 2551 aa7.52□□□□□ -1.21
MSH5-SAPCD1-207ENST00000493662 TRBV6-4A0A1B0GX49 114 aa7.52□□□□□ -1.21
MSH5-SAPCD1-207ENST00000493662 PSCAO43653 123 aa7.52□□□□□ -1.21
MSH5-SAPCD1-207ENST00000493662 Q8N814 137 aa7.51□□□□□ -1.21
MSH5-SAPCD1-207ENST00000493662 TMEM254Q8TBM7 123 aa7.51□□□□□ -1.21
MSH5-SAPCD1-207ENST00000493662 DEFB131BA0A096LNP1 70 aa7.51□□□□□ -1.21
MSH5-SAPCD1-207ENST00000493662 CDC42SE2Q9NRR3 84 aa7.51□□□□□ -1.21
MSH5-SAPCD1-207ENST00000493662 PSPHP1O15172 72 aa7.5□□□□□ -1.21
MSH5-SAPCD1-207ENST00000493662 BEAN1Q3B7T3 259 aa7.5□□□□□ -1.21
MSH5-SAPCD1-207ENST00000493662 CHCHD10Q8WYQ3 142 aaPredicted RBP7.5□□□□□ -1.21
MSH5-SAPCD1-207ENST00000493662 LINC00474Q9P2X8 69 aa7.5□□□□□ -1.21
MSH5-SAPCD1-207ENST00000493662 H3BQ85 93 aa7.5□□□□□ -1.21
MSH5-SAPCD1-207ENST00000493662 ESRGQ1W209 222 aa7.5□□□□□ -1.21
MSH5-SAPCD1-207ENST00000493662 DIRC1Q969H9 104 aa7.5□□□□□ -1.21
MSH5-SAPCD1-207ENST00000493662 TRBV10-3A0A0K0K1G6 114 aa7.5□□□□□ -1.21
MSH5-SAPCD1-207ENST00000493662 GIG44P09565 113 aaPredicted RBP7.5□□□□□ -1.21
MSH5-SAPCD1-207ENST00000493662 PRR3P79522 188 aaKnown RBP7.5□□□□□ -1.21
MSH5-SAPCD1-207ENST00000493662 LINC01547P58512 204 aaPredicted RBP7.49□□□□□ -1.21
MSH5-SAPCD1-207ENST00000493662 ZNF469Q96JG9 3925 aaPredicted RBP7.49□□□□□ -1.21
MSH5-SAPCD1-207ENST00000493662 LINC01600Q96MT4 127 aa7.49□□□□□ -1.21
MSH5-SAPCD1-207ENST00000493662 KPRPQ5T749 579 aaPredicted RBP7.49□□□□□ -1.21
MSH5-SAPCD1-207ENST00000493662 Q6ZVQ6 151 aa7.49□□□□□ -1.21
MSH5-SAPCD1-207ENST00000493662 IGLV5-39A0A0G2JS06 123 aa7.48□□□□□ -1.21
MSH5-SAPCD1-207ENST00000493662 PRYO14603 147 aa7.48□□□□□ -1.21
MSH5-SAPCD1-207ENST00000493662 SPAG11BQ08648 103 aa7.48□□□□□ -1.21
MSH5-SAPCD1-207ENST00000493662 CYSTM1Q9H1C7 97 aa7.48□□□□□ -1.21
MSH5-SAPCD1-207ENST00000493662 A0A087WZ39 114 aa7.48□□□□□ -1.21
MSH5-SAPCD1-207ENST00000493662 MP68P56378 58 aa7.48□□□□□ -1.21
MSH5-SAPCD1-207ENST00000493662 CAMK2N2Q96S95 79 aa7.47□□□□□ -1.21
MSH5-SAPCD1-207ENST00000493662 LINC00959A0A1B0GUT2 108 aa7.47□□□□□ -1.21
MSH5-SAPCD1-207ENST00000493662 LYRM9A8MSI8 78 aa7.46□□□□□ -1.22
MSH5-SAPCD1-207ENST00000493662 X6R8D5 127 aa7.46□□□□□ -1.22
MSH5-SAPCD1-207ENST00000493662 TRAV10A0A0B4J240 114 aa7.45□□□□□ -1.22
MSH5-SAPCD1-207ENST00000493662 COX7BP24311 80 aa7.45□□□□□ -1.22
MSH5-SAPCD1-207ENST00000493662 Q5XG85 94 aa7.45□□□□□ -1.22
MSH5-SAPCD1-207ENST00000493662 C3orf84H3BNL1 204 aa7.45□□□□□ -1.22
MSH5-SAPCD1-207ENST00000493662 C6orf223Q8N319 242 aa7.45□□□□□ -1.22
MSH5-SAPCD1-207ENST00000493662 C19orf73Q9NVV2 129 aa7.45□□□□□ -1.22
MSH5-SAPCD1-207ENST00000493662 CHKB-CPT1BH3BT56 60 aa7.44□□□□□ -1.22
MSH5-SAPCD1-207ENST00000493662 H7BZZ5 65 aa7.44□□□□□ -1.22
MSH5-SAPCD1-207ENST00000493662 WFDC10BQ8IUB3 73 aa7.44□□□□□ -1.22
MSH5-SAPCD1-207ENST00000493662 FAM30AQ9NZY2 134 aa7.44□□□□□ -1.22
MSH5-SAPCD1-207ENST00000493662 BCE1O60756 84 aa7.43□□□□□ -1.22
MSH5-SAPCD1-207ENST00000493662 NKAPP1Q8N9T2 125 aa7.43□□□□□ -1.22
MSH5-SAPCD1-207ENST00000493662 C9orf129Q5T035 196 aaKnown RBP7.43□□□□□ -1.22
MSH5-SAPCD1-207ENST00000493662 TM2D3Q9BRN9 247 aa7.43□□□□□ -1.22
MSH5-SAPCD1-207ENST00000493662 IGLV2-33A0A075B6J2 118 aaPredicted RBP7.42□□□□□ -1.22
MSH5-SAPCD1-207ENST00000493662 IGKV2-24A0A0C4DH68 120 aa7.42□□□□□ -1.22
MSH5-SAPCD1-207ENST00000493662 IGLV5-45A0A087WSX0 123 aa7.42□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 72.8 ms