RNA–Protein interactions for RNA: ENST00000476413.1

VPS50-212, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 381 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-212ENST00000476413 SCN7AQ01118 1682 aa0.14□□□□□ -2.39
VPS50-212ENST00000476413 MTORP42345 2549 aa0.14□□□□□ -2.39
VPS50-212ENST00000476413 TLN2Q9Y4G6 2542 aa0.14□□□□□ -2.39
VPS50-212ENST00000476413 MAP1AP78559 2803 aaPredicted RBP0.14□□□□□ -2.39
VPS50-212ENST00000476413 PKD1L1Q8TDX9 2849 aa0.14□□□□□ -2.39
VPS50-212ENST00000476413 COL7A1Q02388 2944 aa0.14□□□□□ -2.39
VPS50-212ENST00000476413 CELSR1Q9NYQ6 3014 aa0.13□□□□□ -2.39
VPS50-212ENST00000476413 ZFYVE16Q7Z3T8 1539 aa0.13□□□□□ -2.39
VPS50-212ENST00000476413 STAB1Q9NY15 2570 aa0.13□□□□□ -2.39
VPS50-212ENST00000476413 TOP2BQ02880 1626 aa0.13□□□□□ -2.39
VPS50-212ENST00000476413 TENM2Q9NT68 2774 aa0.13□□□□□ -2.39
VPS50-212ENST00000476413 TIAM2Q8IVF5 1701 aa0.13□□□□□ -2.39
VPS50-212ENST00000476413 MYO9AB2RTY4 2548 aa0.13□□□□□ -2.39
VPS50-212ENST00000476413 AKAP13Q12802 2813 aa0.13□□□□□ -2.39
VPS50-212ENST00000476413 RABAC1Q9UI14 185 aa0.13□□□□□ -2.39
VPS50-212ENST00000476413 ROBO1Q9Y6N7 1651 aa0.13□□□□□ -2.39
VPS50-212ENST00000476413 A0A1B0GUL6 1792 aa0.13□□□□□ -2.39
VPS50-212ENST00000476413 UTP20O75691 2785 aaKnown RBP0.13□□□□□ -2.39
VPS50-212ENST00000476413 VWFP04275 2813 aa0.13□□□□□ -2.39
VPS50-212ENST00000476413 NF1P21359 2839 aa0.13□□□□□ -2.39
VPS50-212ENST00000476413 MGAM2Q2M2H8 2515 aa0.13□□□□□ -2.39
VPS50-212ENST00000476413 CHD1O14646 1710 aa0.13□□□□□ -2.39
VPS50-212ENST00000476413 SUPT6HQ7KZ85 1726 aaKnown RBP0.13□□□□□ -2.39
VPS50-212ENST00000476413 PAPPAQ13219 1627 aa0.13□□□□□ -2.39
VPS50-212ENST00000476413 PRDM15P57071 1507 aaPredicted RBP0.13□□□□□ -2.39
VPS50-212ENST00000476413 TGP01266 2768 aa0.12□□□□□ -2.39
VPS50-212ENST00000476413 USP9XQ93008 2570 aaPredicted RBP0.12□□□□□ -2.39
VPS50-212ENST00000476413 RGPD8O14715 1765 aaPredicted RBP0.12□□□□□ -2.39
VPS50-212ENST00000476413 LTN1O94822 1766 aa0.12□□□□□ -2.39
VPS50-212ENST00000476413 ANKRD36CQ5JPF3 1778 aa0.12□□□□□ -2.39
VPS50-212ENST00000476413 TRANK1O15050 2925 aa0.12□□□□□ -2.39
VPS50-212ENST00000476413 MXRA5Q9NR99 2828 aa0.12□□□□□ -2.39
VPS50-212ENST00000476413 C5P01031 1676 aa0.12□□□□□ -2.39
VPS50-212ENST00000476413 CLTCQ00610 1675 aaKnown RBP0.12□□□□□ -2.39
VPS50-212ENST00000476413 HIVEP1P15822 2718 aa0.12□□□□□ -2.39
VPS50-212ENST00000476413 CCDC88BA6NC98 1476 aa0.12□□□□□ -2.39
VPS50-212ENST00000476413 LRRC9Q6ZRR7 1453 aa0.12□□□□□ -2.39
VPS50-212ENST00000476413 PLEKHH2Q8IVE3 1493 aa0.12□□□□□ -2.39
VPS50-212ENST00000476413 F8WEM9 126 aa0.12□□□□□ -2.39
VPS50-212ENST00000476413 NMSQ5H8A3 153 aa0.12□□□□□ -2.39
VPS50-212ENST00000476413 PYY3Q5JQD4 70 aa0.12□□□□□ -2.39
VPS50-212ENST00000476413 HEPN1Q6WQI6 88 aa0.12□□□□□ -2.39
VPS50-212ENST00000476413 COX6B2Q6YFQ2 88 aa0.12□□□□□ -2.39
VPS50-212ENST00000476413 V9GYS6 101 aa0.12□□□□□ -2.39
VPS50-212ENST00000476413 GCN1Q92616 2671 aaKnown RBP0.12□□□□□ -2.39
VPS50-212ENST00000476413 FMN2Q9NZ56 1722 aa0.12□□□□□ -2.39
VPS50-212ENST00000476413 CC2D2AQ9P2K1 1620 aa0.12□□□□□ -2.39
VPS50-212ENST00000476413 NIPBLQ6KC79 2804 aaeCLIP0.12□□□□□ -2.39
VPS50-212ENST00000476413 SLIT1O75093 1534 aa0.12□□□□□ -2.39
VPS50-212ENST00000476413 CFAP46Q8IYW2 2715 aa0.12□□□□□ -2.39
VPS50-212ENST00000476413 KMT2AQ03164 3969 aa0.12□□□□□ -2.39
VPS50-212ENST00000476413 TEX15Q9BXT5 2789 aa0.11□□□□□ -2.39
VPS50-212ENST00000476413 ITPR3Q14573 2671 aa0.11□□□□□ -2.39
VPS50-212ENST00000476413 PPRC1Q5VV67 1664 aaKnown RBP0.11□□□□□ -2.39
VPS50-212ENST00000476413 TOPAZ1Q8N9V7 1692 aa0.11□□□□□ -2.39
VPS50-212ENST00000476413 NRXN1Q9ULB1 1477 aa0.11□□□□□ -2.39
VPS50-212ENST00000476413 COL6A5A8TX70 2615 aa0.11□□□□□ -2.39
VPS50-212ENST00000476413 CCNB3Q8WWL7 1395 aa0.11□□□□□ -2.39
VPS50-212ENST00000476413 C4AP0C0L4 1744 aa0.11□□□□□ -2.39
VPS50-212ENST00000476413 C4BP0C0L5 1744 aa0.11□□□□□ -2.39
VPS50-212ENST00000476413 DDX60LQ5H9U9 1706 aaKnown RBP0.11□□□□□ -2.39
VPS50-212ENST00000476413 KNDC1Q76NI1 1749 aa0.11□□□□□ -2.39
VPS50-212ENST00000476413 XRN1Q8IZH2 1706 aaKnown RBP0.11□□□□□ -2.39
VPS50-212ENST00000476413 CRYBG1Q9Y4K1 1723 aa0.11□□□□□ -2.39
VPS50-212ENST00000476413 PRRC2CQ9Y520 2896 aaKnown RBP0.11□□□□□ -2.39
VPS50-212ENST00000476413 TENM4Q6N022 2769 aa0.11□□□□□ -2.39
VPS50-212ENST00000476413 PLGLAQ15195 96 aa0.11□□□□□ -2.39
VPS50-212ENST00000476413 DEFB112Q30KQ8 113 aa0.11□□□□□ -2.39
VPS50-212ENST00000476413 BPTFQ12830 3046 aa0.11□□□□□ -2.39
VPS50-212ENST00000476413 EPRSP07814 1512 aaKnown RBP0.11□□□□□ -2.39
VPS50-212ENST00000476413 TULP4Q9NRJ4 1543 aa0.11□□□□□ -2.39
VPS50-212ENST00000476413 RGPD5Q99666 1765 aa0.11□□□□□ -2.39
VPS50-212ENST00000476413 PAPPA2Q9BXP8 1791 aa0.11□□□□□ -2.39
VPS50-212ENST00000476413 SCN11AQ9UI33 1791 aa0.11□□□□□ -2.39
VPS50-212ENST00000476413 CLIP1P30622 1438 aa0.11□□□□□ -2.39
VPS50-212ENST00000476413 TROQ12816 1431 aaPredicted RBP0.11□□□□□ -2.39
VPS50-212ENST00000476413 EDC4Q6P2E9 1401 aaKnown RBP0.11□□□□□ -2.39
VPS50-212ENST00000476413 VPS8Q8N3P4 1428 aa0.11□□□□□ -2.39
VPS50-212ENST00000476413 NBEAL2Q6ZNJ1 2754 aa0.11□□□□□ -2.39
VPS50-212ENST00000476413 FANCAO15360 1455 aa0.1□□□□□ -2.39
VPS50-212ENST00000476413 NLRP1Q9C000 1473 aa0.1□□□□□ -2.39
VPS50-212ENST00000476413 QSER1Q2KHR3 1735 aa0.1□□□□□ -2.39
VPS50-212ENST00000476413 SPHKAPQ2M3C7 1700 aa0.1□□□□□ -2.39
VPS50-212ENST00000476413 MARF1Q9Y4F3 1742 aaKnown RBP0.1□□□□□ -2.39
VPS50-212ENST00000476413 KIAA0556O60303 1618 aa0.1□□□□□ -2.39
VPS50-212ENST00000476413 SCRIBQ14160 1630 aa0.1□□□□□ -2.39
VPS50-212ENST00000476413 TEP1Q99973 2627 aaKnown RBP0.1□□□□□ -2.39
VPS50-212ENST00000476413 TLN1Q9Y490 2541 aaKnown RBP0.1□□□□□ -2.39
VPS50-212ENST00000476413 ANKRD11Q6UB99 2663 aaPredicted RBP0.1□□□□□ -2.39
VPS50-212ENST00000476413 A0A1B0GUT8 65 aa0.1□□□□□ -2.39
VPS50-212ENST00000476413 PVALEFA0A1B0GWK0 134 aa0.1□□□□□ -2.39
VPS50-212ENST00000476413 NDUFB1O75438 58 aa0.1□□□□□ -2.39
VPS50-212ENST00000476413 HMGN2P05204 90 aaKnown RBP0.1□□□□□ -2.39
VPS50-212ENST00000476413 ACYP1P07311 99 aa0.1□□□□□ -2.39
VPS50-212ENST00000476413 IGLC2P0DOY2 106 aa0.1□□□□□ -2.39
VPS50-212ENST00000476413 IGLC3P0DOY3 106 aa0.1□□□□□ -2.39
VPS50-212ENST00000476413 KLK9Q2XQG4 91 aa0.1□□□□□ -2.39
VPS50-212ENST00000476413 C9orf62Q8N4C0 152 aa0.1□□□□□ -2.39
VPS50-212ENST00000476413 CDKN2A-AS1Q9UH64 79 aa0.1□□□□□ -2.39
VPS50-212ENST00000476413 CEP250Q9BV73 2442 aa0.1□□□□□ -2.39
Retrieved 100 of 20,778 RNA–protein pairs in 116.9 ms