RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 Q8IZM0 81 aa4.35□□□□□ -1.71
USP54-208ENST00000461520 TIMM17AQ99595 171 aa4.35□□□□□ -1.71
USP54-208ENST00000461520 TOMM7Q9P0U1 55 aa4.35□□□□□ -1.71
USP54-208ENST00000461520 KRTAP1-4P0C5Y4 121 aa4.34□□□□□ -1.71
USP54-208ENST00000461520 ALKBH7Q9BT30 221 aaPredicted RBP4.34□□□□□ -1.71
USP54-208ENST00000461520 F8VRH5 84 aa4.33□□□□□ -1.72
USP54-208ENST00000461520 NUPR1O60356 82 aa4.33□□□□□ -1.72
USP54-208ENST00000461520 ZNF861PO60384 105 aa4.33□□□□□ -1.72
USP54-208ENST00000461520 RPL13AP40429 203 aaKnown RBP4.33□□□□□ -1.72
USP54-208ENST00000461520 CXCL5P42830 114 aa4.33□□□□□ -1.72
USP54-208ENST00000461520 LBHQ53QV2 105 aaPredicted RBP4.33□□□□□ -1.72
USP54-208ENST00000461520 ERASQ7Z444 233 aa4.33□□□□□ -1.72
USP54-208ENST00000461520 COMMD7Q86VX2 200 aa4.33□□□□□ -1.72
USP54-208ENST00000461520 TOMM6Q96B49 74 aa4.33□□□□□ -1.72
USP54-208ENST00000461520 GEMIN7Q9H840 131 aaKnown RBP4.33□□□□□ -1.72
USP54-208ENST00000461520 CDKN2A-AS1Q9UH64 79 aa4.33□□□□□ -1.72
USP54-208ENST00000461520 CARHSP1Q9Y2V2 147 aaKnown RBP4.33□□□□□ -1.72
USP54-208ENST00000461520 C22orf24Q9Y442 160 aa4.33□□□□□ -1.72
USP54-208ENST00000461520 TRAV9-1A0A075B6T8 112 aa4.32□□□□□ -1.72
USP54-208ENST00000461520 LINC01549A6NIU2 74 aa4.32□□□□□ -1.72
USP54-208ENST00000461520 LINC00469Q8N7U9 141 aa4.32□□□□□ -1.72
USP54-208ENST00000461520 XAGE1AQ9HD64 81 aa4.32□□□□□ -1.72
USP54-208ENST00000461520 TP73-AS1Q9UF72 201 aa4.32□□□□□ -1.72
USP54-208ENST00000461520 FAT4Q6V0I7 4981 aa4.31□□□□□ -1.72
USP54-208ENST00000461520 IGLV9-49A0A0B4J1Y8 123 aa4.31□□□□□ -1.72
USP54-208ENST00000461520 TINCRA0A1B0GVN0 87 aa4.31□□□□□ -1.72
USP54-208ENST00000461520 PDZD11Q5EBL8 140 aa4.31□□□□□ -1.72
USP54-208ENST00000461520 MRPL55Q7Z7F7 128 aaKnown RBP4.31□□□□□ -1.72
USP54-208ENST00000461520 SCGB3A1Q96QR1 104 aa4.31□□□□□ -1.72
USP54-208ENST00000461520 TMEM218A2RU14 115 aa4.3□□□□□ -1.72
USP54-208ENST00000461520 LINC01546A6NGU7 62 aa4.3□□□□□ -1.72
USP54-208ENST00000461520 KRTAP5-9P26371 169 aa4.3□□□□□ -1.72
USP54-208ENST00000461520 UQCC3Q6UW78 93 aa4.3□□□□□ -1.72
USP54-208ENST00000461520 GNB1LQ9BYB4 327 aa4.3□□□□□ -1.72
USP54-208ENST00000461520 S100PP25815 95 aa4.29□□□□□ -1.72
USP54-208ENST00000461520 RPL28P46779 137 aaKnown RBP4.29□□□□□ -1.72
USP54-208ENST00000461520 COX19Q49B96 90 aa4.29□□□□□ -1.72
USP54-208ENST00000461520 COX7B2Q8TF08 81 aa4.29□□□□□ -1.72
USP54-208ENST00000461520 CST9LQ9H4G1 147 aa4.29□□□□□ -1.72
USP54-208ENST00000461520 BCE1O60756 84 aa4.28□□□□□ -1.72
USP54-208ENST00000461520 ATP6V1G1O75348 118 aa4.28□□□□□ -1.72
USP54-208ENST00000461520 PMVKQ15126 192 aa4.28□□□□□ -1.72
USP54-208ENST00000461520 LINC00167Q96N53 147 aa4.28□□□□□ -1.72
USP54-208ENST00000461520 SEC11CQ9BY50 192 aa4.28□□□□□ -1.72
USP54-208ENST00000461520 IGLV7-46A0A075B6I9 117 aa4.27□□□□□ -1.73
USP54-208ENST00000461520 H3BRM9 83 aa4.27□□□□□ -1.73
USP54-208ENST00000461520 PRR4Q16378 134 aa4.27□□□□□ -1.73
USP54-208ENST00000461520 FA2HQ7L5A8 372 aa4.27□□□□□ -1.73
USP54-208ENST00000461520 SMCO4Q9NRQ5 59 aa4.27□□□□□ -1.73
USP54-208ENST00000461520 RPL37AP8A6NKH3 93 aa4.26□□□□□ -1.73
USP54-208ENST00000461520 ATP5LO75964 103 aa4.26□□□□□ -1.73
USP54-208ENST00000461520 SPINK8P0C7L1 97 aa4.26□□□□□ -1.73
USP54-208ENST00000461520 CRYGAP11844 174 aa4.26□□□□□ -1.73
USP54-208ENST00000461520 RAB5BP61020 215 aa4.26□□□□□ -1.73
USP54-208ENST00000461520 GAGE2AQ6NT46 116 aa4.26□□□□□ -1.73
USP54-208ENST00000461520 NKAPP1Q8N9T2 125 aa4.26□□□□□ -1.73
USP54-208ENST00000461520 IGLC3P0DOY3 106 aa4.25□□□□□ -1.73
USP54-208ENST00000461520 FABP9Q0Z7S8 132 aa4.25□□□□□ -1.73
USP54-208ENST00000461520 KRTAP13-1Q8IUC0 172 aa4.25□□□□□ -1.73
USP54-208ENST00000461520 TYMSOSQ8TAI1 123 aa4.25□□□□□ -1.73
USP54-208ENST00000461520 TSPAN13O95857 204 aa4.24□□□□□ -1.73
USP54-208ENST00000461520 APOC3P02656 99 aa4.24□□□□□ -1.73
USP54-208ENST00000461520 LINC00614P0C842 121 aa4.24□□□□□ -1.73
USP54-208ENST00000461520 UBE2AP49459 152 aa4.24□□□□□ -1.73
USP54-208ENST00000461520 COX17Q14061 63 aa4.24□□□□□ -1.73
USP54-208ENST00000461520 RHEBQ15382 184 aa4.24□□□□□ -1.73
USP54-208ENST00000461520 C10orf91Q5T1B1 145 aa4.24□□□□□ -1.73
USP54-208ENST00000461520 IGKV2-28A0A075B6P5 120 aa4.23□□□□□ -1.73
USP54-208ENST00000461520 A0A096LNJ9 63 aa4.23□□□□□ -1.73
USP54-208ENST00000461520 A0A0U1RQV1 116 aa4.23□□□□□ -1.73
USP54-208ENST00000461520 IGKV2D-28P01615 120 aa4.23□□□□□ -1.73
USP54-208ENST00000461520 ZNF22P17026 224 aaPredicted RBP4.23□□□□□ -1.73
USP54-208ENST00000461520 PFN2P35080 140 aa4.23□□□□□ -1.73
USP54-208ENST00000461520 NDUFA6P56556 154 aa4.23□□□□□ -1.73
USP54-208ENST00000461520 FAM229BQ4G0N7 80 aa4.23□□□□□ -1.73
USP54-208ENST00000461520 LCE3EQ5T5B0 92 aa4.23□□□□□ -1.73
USP54-208ENST00000461520 SFTA2Q6UW10 78 aa4.23□□□□□ -1.73
USP54-208ENST00000461520 ERG28Q9UKR5 140 aa4.23□□□□□ -1.73
USP54-208ENST00000461520 HBDP02042 147 aa4.22□□□□□ -1.73
USP54-208ENST00000461520 VPREB1P12018 145 aa4.22□□□□□ -1.73
USP54-208ENST00000461520 KRTAP13-2Q52LG2 175 aa4.22□□□□□ -1.73
USP54-208ENST00000461520 SLC7A5P1Q8MH63 180 aa4.22□□□□□ -1.73
USP54-208ENST00000461520 C18orf32Q8TCD1 76 aa4.22□□□□□ -1.73
USP54-208ENST00000461520 SND1-IT1Q9HBX3 110 aa4.22□□□□□ -1.73
USP54-208ENST00000461520 ANAPC11Q9NYG5 84 aa4.22□□□□□ -1.73
USP54-208ENST00000461520 SCO1O75880 301 aa4.21□□□□□ -1.74
USP54-208ENST00000461520 CTAG1AP78358 180 aa4.21□□□□□ -1.74
USP54-208ENST00000461520 TMEM126AQ9H061 195 aa4.21□□□□□ -1.74
USP54-208ENST00000461520 TRAPPC1Q9Y5R8 145 aa4.21□□□□□ -1.74
USP54-208ENST00000461520 IGKV2D-26A0A0A0MRZ7 120 aa4.2□□□□□ -1.74
USP54-208ENST00000461520 C11orf86A6NJI1 115 aa4.2□□□□□ -1.74
USP54-208ENST00000461520 SNRPEP62304 92 aaKnown RBP4.2□□□□□ -1.74
USP54-208ENST00000461520 PRLHP81277 87 aa4.2□□□□□ -1.74
USP54-208ENST00000461520 PMCHL1Q16048 86 aa4.2□□□□□ -1.74
USP54-208ENST00000461520 TMEM170BQ5T4T1 132 aa4.2□□□□□ -1.74
USP54-208ENST00000461520 FAM19A1Q7Z5A9 133 aa4.2□□□□□ -1.74
USP54-208ENST00000461520 BAGE3Q86Y29 109 aa4.2□□□□□ -1.74
USP54-208ENST00000461520 LINC00304Q8N9R0 145 aa4.2□□□□□ -1.74
USP54-208ENST00000461520 ZNF625Q96I27 306 aaPredicted RBP4.2□□□□□ -1.74
USP54-208ENST00000461520 TMEM238C9JI98 176 aa4.19□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms