RNA–Protein interactions for RNA: ENST00000373006.5

USP49-201, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 1 (best) BASIC

Gene USP49, Length 3,177 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-201ENST00000373006 Q8IZM0 81 aa9.42□□□□□ -0.9
USP49-201ENST00000373006 UBL5Q9BZL1 73 aa9.42□□□□□ -0.9
USP49-201ENST00000373006 Q8N3U1 123 aa9.42□□□□□ -0.9
USP49-201ENST00000373006 Q8NDZ9 215 aa9.42□□□□□ -0.9
USP49-201ENST00000373006 LAMTOR3Q9UHA4 124 aa9.42□□□□□ -0.9
USP49-201ENST00000373006 LINC00269Q8N2A0 174 aa9.41□□□□□ -0.9
USP49-201ENST00000373006 C1orf195Q5TG92 126 aa9.41□□□□□ -0.9
USP49-201ENST00000373006 LINC00167Q96N53 147 aa9.41□□□□□ -0.9
USP49-201ENST00000373006 TRAV10A0A0B4J240 114 aa9.4□□□□□ -0.9
USP49-201ENST00000373006 LRCOL1A6NCL2 159 aa9.4□□□□□ -0.9
USP49-201ENST00000373006 DAD1P61803 113 aa9.4□□□□□ -0.91
USP49-201ENST00000373006 NDUFC2O95298 119 aa9.39□□□□□ -0.91
USP49-201ENST00000373006 M0R2N4 97 aa9.39□□□□□ -0.91
USP49-201ENST00000373006 LINC01006Q8NI28 216 aa9.38□□□□□ -0.91
USP49-201ENST00000373006 SMR3AQ99954 134 aa9.38□□□□□ -0.91
USP49-201ENST00000373006 KIAA0087Q14695 138 aa9.38□□□□□ -0.91
USP49-201ENST00000373006 IGLV1-51P01701 117 aa9.38□□□□□ -0.91
USP49-201ENST00000373006 A0A1B0GUV1 79 aa9.37□□□□□ -0.91
USP49-201ENST00000373006 H7BZZ5 65 aa9.37□□□□□ -0.91
USP49-201ENST00000373006 CMC4P56277 68 aaPredicted RBP9.36□□□□□ -0.91
USP49-201ENST00000373006 KRTAP1-3Q8IUG1 177 aa9.36□□□□□ -0.91
USP49-201ENST00000373006 CHCHD10Q8WYQ3 142 aaPredicted RBP9.36□□□□□ -0.91
USP49-201ENST00000373006 DEFB4AO15263 64 aa9.36□□□□□ -0.91
USP49-201ENST00000373006 ANGP03950 147 aaKnown RBP9.36□□□□□ -0.91
USP49-201ENST00000373006 SPATA3Q8NHX4 192 aa9.36□□□□□ -0.91
USP49-201ENST00000373006 F8P00451 2351 aa9.36□□□□□ -0.91
USP49-201ENST00000373006 FP248Q71RG6 208 aaPredicted RBP9.35□□□□□ -0.91
USP49-201ENST00000373006 C6orf223Q8N319 242 aa9.35□□□□□ -0.91
USP49-201ENST00000373006 ATRQ13535 2644 aa9.35□□□□□ -0.91
USP49-201ENST00000373006 J3QKU1 62 aa9.35□□□□□ -0.91
USP49-201ENST00000373006 ATP5EP2Q5VTU8 51 aa9.35□□□□□ -0.91
USP49-201ENST00000373006 LYPD5Q6UWN5 251 aa9.35□□□□□ -0.91
USP49-201ENST00000373006 C10orf25Q5T742 122 aa9.34□□□□□ -0.91
USP49-201ENST00000373006 LINC00575Q6W349 94 aa9.34□□□□□ -0.91
USP49-201ENST00000373006 SERP1Q9Y6X1 66 aa9.34□□□□□ -0.91
USP49-201ENST00000373006 CD164L2Q6UWJ8 174 aa9.34□□□□□ -0.91
USP49-201ENST00000373006 UNQ6190/PRO20217Q6UXQ8 127 aa9.33□□□□□ -0.92
USP49-201ENST00000373006 TEP1Q99973 2627 aaKnown RBP9.33□□□□□ -0.92
USP49-201ENST00000373006 Q6ZQT0 140 aa9.33□□□□□ -0.92
USP49-201ENST00000373006 Q8N9L7 120 aa9.33□□□□□ -0.92
USP49-201ENST00000373006 PRO0255Q9UI72 69 aa9.33□□□□□ -0.92
USP49-201ENST00000373006 TRBV7-6A0A0J9YX20 115 aa9.32□□□□□ -0.92
USP49-201ENST00000373006 REG3AQ06141 175 aa9.32□□□□□ -0.92
USP49-201ENST00000373006 COX17Q14061 63 aa9.32□□□□□ -0.92
USP49-201ENST00000373006 TM2D3Q9BRN9 247 aa9.32□□□□□ -0.92
USP49-201ENST00000373006 Q6ZQY7 126 aa9.31□□□□□ -0.92
USP49-201ENST00000373006 LINC01547P58512 204 aaPredicted RBP9.3□□□□□ -0.92
USP49-201ENST00000373006 LINC00482Q8N8I6 264 aa9.3□□□□□ -0.92
USP49-201ENST00000373006 SMIM26A0A096LP01 95 aa9.29□□□□□ -0.92
USP49-201ENST00000373006 IGHV4-28A0A0C4DH34 117 aa9.29□□□□□ -0.92
USP49-201ENST00000373006 TRBV10-3A0A0K0K1G6 114 aa9.29□□□□□ -0.92
USP49-201ENST00000373006 ZNF561-AS1K7EIQ3 104 aa9.29□□□□□ -0.92
USP49-201ENST00000373006 Q6ZVQ6 151 aa9.29□□□□□ -0.92
USP49-201ENST00000373006 FAM229BQ4G0N7 80 aa9.28□□□□□ -0.92
USP49-201ENST00000373006 X6R8D5 127 aa9.28□□□□□ -0.92
USP49-201ENST00000373006 TENM1Q9UKZ4 2725 aa9.28□□□□□ -0.92
USP49-201ENST00000373006 LINC00612Q8N6U2 182 aa9.28□□□□□ -0.92
USP49-201ENST00000373006 CYSRT1A8MQ03 144 aa9.27□□□□□ -0.93
USP49-201ENST00000373006 SPAG11BQ08648 103 aa9.27□□□□□ -0.93
USP49-201ENST00000373006 XAGE1AQ9HD64 81 aa9.27□□□□□ -0.93
USP49-201ENST00000373006 TRAV7A0A075B6U4 112 aa9.26□□□□□ -0.93
USP49-201ENST00000373006 NDUFC2-KCTD14E9PQ53 114 aa9.26□□□□□ -0.93
USP49-201ENST00000373006 RETNQ9HD89 108 aa9.26□□□□□ -0.93
USP49-201ENST00000373006 PDZD2O15018 2839 aa9.26□□□□□ -0.93
USP49-201ENST00000373006 HTN3P15516 51 aa9.26□□□□□ -0.93
USP49-201ENST00000373006 LOC110117498A0A087WWA1 95 aa9.25□□□□□ -0.93
USP49-201ENST00000373006 PRR4Q16378 134 aa9.24□□□□□ -0.93
USP49-201ENST00000373006 DEFB135Q30KP9 77 aa9.24□□□□□ -0.93
USP49-201ENST00000373006 C16orf95Q9H693 158 aa9.24□□□□□ -0.93
USP49-201ENST00000373006 OTOGQ6ZRI0 2925 aa9.23□□□□□ -0.93
USP49-201ENST00000373006 IGLV6-57P01721 117 aa9.23□□□□□ -0.93
USP49-201ENST00000373006 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP9.23□□□□□ -0.93
USP49-201ENST00000373006 KLK12Q9UKR0 248 aa9.23□□□□□ -0.93
USP49-201ENST00000373006 MIFP14174 115 aa9.22□□□□□ -0.93
USP49-201ENST00000373006 TRRAPQ9Y4A5 3859 aa9.22□□□□□ -0.93
USP49-201ENST00000373006 MUC7Q8TAX7 377 aa9.22□□□□□ -0.93
USP49-201ENST00000373006 ANK3Q12955 4377 aaKnown RBP9.2□□□□□ -0.94
USP49-201ENST00000373006 KRTAP1-1Q07627 177 aa9.2□□□□□ -0.94
USP49-201ENST00000373006 CELA1Q9UNI1 258 aa9.19□□□□□ -0.94
USP49-201ENST00000373006 NREPQ16612 68 aa9.19□□□□□ -0.94
USP49-201ENST00000373006 DIRC1Q969H9 104 aa9.19□□□□□ -0.94
USP49-201ENST00000373006 A0A0J9YWU9 116 aa9.18□□□□□ -0.94
USP49-201ENST00000373006 IGHV4-30-4P0DP06 118 aa9.18□□□□□ -0.94
USP49-201ENST00000373006 KRTAP10-3P60369 221 aa9.18□□□□□ -0.94
USP49-201ENST00000373006 PSPHP1O15172 72 aa9.18□□□□□ -0.94
USP49-201ENST00000373006 PKD1L1Q8TDX9 2849 aa9.18□□□□□ -0.94
USP49-201ENST00000373006 ZNF73O43830 326 aaPredicted RBP9.18□□□□□ -0.94
USP49-201ENST00000373006 KLKP1Q107X0 134 aa9.18□□□□□ -0.94
USP49-201ENST00000373006 C6orf48Q9UBA6 75 aa9.18□□□□□ -0.94
USP49-201ENST00000373006 HIVEP1P15822 2718 aa9.17□□□□□ -0.94
USP49-201ENST00000373006 KMT2BQ9UMN6 2715 aaPredicted RBP9.17□□□□□ -0.94
USP49-201ENST00000373006 TMEM254Q8TBM7 123 aa9.17□□□□□ -0.94
USP49-201ENST00000373006 LYRM9A8MSI8 78 aa9.17□□□□□ -0.94
USP49-201ENST00000373006 CXCL6P80162 114 aa9.17□□□□□ -0.94
USP49-201ENST00000373006 C9orf66Q5T8R8 295 aa9.17□□□□□ -0.94
USP49-201ENST00000373006 BPY2O14599 106 aa9.16□□□□□ -0.94
USP49-201ENST00000373006 PDE6GP18545 87 aa9.16□□□□□ -0.94
USP49-201ENST00000373006 COX7BP24311 80 aa9.16□□□□□ -0.94
USP49-201ENST00000373006 HIGD2BQ4VC39 106 aa9.15□□□□□ -0.94
USP49-201ENST00000373006 HIGD2AQ9BW72 106 aa9.15□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms