RNA–Protein interactions for RNA: ENST00000638142.2

SYNGAP1-227, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 5

Gene SYNGAP1, Length 2,499 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-227ENST00000638142 KIR2DL5BQ8NHK3 375 aa14.02□□□□□ -0.17
SYNGAP1-227ENST00000638142 PAX4O43316 350 aa14.01□□□□□ -0.17
SYNGAP1-227ENST00000638142 C3orf56Q8N813 242 aa14.01□□□□□ -0.17
SYNGAP1-227ENST00000638142 C6orf226Q5I0X4 101 aa14□□□□□ -0.17
SYNGAP1-227ENST00000638142 C9orf153Q5TBE3 101 aa14□□□□□ -0.17
SYNGAP1-227ENST00000638142 LINC00526Q96FQ7 95 aa14□□□□□ -0.17
SYNGAP1-227ENST00000638142 LINC00612Q8N6U2 182 aa13.99□□□□□ -0.17
SYNGAP1-227ENST00000638142 DEFB130BP0DP73 79 aa13.99□□□□□ -0.17
SYNGAP1-227ENST00000638142 DEFB130AP0DP74 79 aa13.99□□□□□ -0.17
SYNGAP1-227ENST00000638142 OBSCN-AS1Q96MR7 158 aa13.99□□□□□ -0.17
SYNGAP1-227ENST00000638142 A0A1B0GUV1 79 aa13.98□□□□□ -0.17
SYNGAP1-227ENST00000638142 LY6G6DO95868 133 aa13.98□□□□□ -0.17
SYNGAP1-227ENST00000638142 HIST1H4AP62805 103 aaKnown RBP13.98□□□□□ -0.17
SYNGAP1-227ENST00000638142 SS18Q15532 418 aa13.98□□□□□ -0.17
SYNGAP1-227ENST00000638142 GYPEP15421 78 aa13.97□□□□□ -0.17
SYNGAP1-227ENST00000638142 Q8IZM0 81 aa13.97□□□□□ -0.17
SYNGAP1-227ENST00000638142 KRTAP1-1Q07627 177 aa13.97□□□□□ -0.17
SYNGAP1-227ENST00000638142 OR13C6PQ8NH95 151 aa13.97□□□□□ -0.17
SYNGAP1-227ENST00000638142 LECT2O14960 151 aa13.96□□□□□ -0.17
SYNGAP1-227ENST00000638142 LINC01561Q8N1V8 128 aa13.96□□□□□ -0.17
SYNGAP1-227ENST00000638142 XCL1P47992 114 aa13.96□□□□□ -0.18
SYNGAP1-227ENST00000638142 FLNAP21333 2647 aaKnown RBP13.95□□□□□ -0.18
SYNGAP1-227ENST00000638142 NIPBLQ6KC79 2804 aaeCLIP13.95□□□□□ -0.18
SYNGAP1-227ENST00000638142 COX7CP15954 63 aa13.95□□□□□ -0.18
SYNGAP1-227ENST00000638142 C11orf68Q9H3H3 251 aaKnown RBP13.94□□□□□ -0.18
SYNGAP1-227ENST00000638142 CCDC168Q8NDH2 2452 aa13.94□□□□□ -0.18
SYNGAP1-227ENST00000638142 C9orf129Q5T035 196 aaKnown RBP13.93□□□□□ -0.18
SYNGAP1-227ENST00000638142 C14orf132Q9NPU4 83 aa13.93□□□□□ -0.18
SYNGAP1-227ENST00000638142 SETD2Q9BYW2 2564 aaPredicted RBP13.93□□□□□ -0.18
SYNGAP1-227ENST00000638142 ATOX1O00244 68 aa13.93□□□□□ -0.18
SYNGAP1-227ENST00000638142 KLK5Q9Y337 293 aaPredicted RBP13.93□□□□□ -0.18
SYNGAP1-227ENST00000638142 NBPF19A0A087WUL8 3843 aa13.93□□□□□ -0.18
SYNGAP1-227ENST00000638142 C2orf48Q96LS8 159 aa13.92□□□□□ -0.18
SYNGAP1-227ENST00000638142 PRO0255Q9UI72 69 aa13.91□□□□□ -0.18
SYNGAP1-227ENST00000638142 Q6JHZ5 121 aa13.91□□□□□ -0.18
SYNGAP1-227ENST00000638142 CUBNO60494 3623 aa13.9□□□□□ -0.18
SYNGAP1-227ENST00000638142 ORMDL1Q9P0S3 153 aa13.89□□□□□ -0.19
SYNGAP1-227ENST00000638142 SMIM9A6NGZ8 99 aa13.89□□□□□ -0.19
SYNGAP1-227ENST00000638142 CRYGAP11844 174 aa13.89□□□□□ -0.19
SYNGAP1-227ENST00000638142 HILS1P60008 231 aa13.88□□□□□ -0.19
SYNGAP1-227ENST00000638142 X6R8D5 127 aa13.88□□□□□ -0.19
SYNGAP1-227ENST00000638142 LINC00846Q9NV44 126 aa13.88□□□□□ -0.19
SYNGAP1-227ENST00000638142 A0A1B0GX51 115 aa13.87□□□□□ -0.19
SYNGAP1-227ENST00000638142 CLPSL2Q6UWE3 100 aa13.87□□□□□ -0.19
SYNGAP1-227ENST00000638142 RPL18AQ02543 176 aaKnown RBP13.87□□□□□ -0.19
SYNGAP1-227ENST00000638142 COX17Q14061 63 aa13.86□□□□□ -0.19
SYNGAP1-227ENST00000638142 LINC00167Q96N53 147 aa13.86□□□□□ -0.19
SYNGAP1-227ENST00000638142 NCR3O14931 201 aa13.86□□□□□ -0.19
SYNGAP1-227ENST00000638142 NDUFC2O95298 119 aa13.86□□□□□ -0.19
SYNGAP1-227ENST00000638142 SLPIP03973 132 aa13.86□□□□□ -0.19
SYNGAP1-227ENST00000638142 CD164L2Q6UWJ8 174 aa13.85□□□□□ -0.19
SYNGAP1-227ENST00000638142 KIAA0087Q14695 138 aa13.84□□□□□ -0.19
SYNGAP1-227ENST00000638142 A0A096LPF7 62 aa13.83□□□□□ -0.2
SYNGAP1-227ENST00000638142 IGKV3D-7A0A0C4DH55 119 aa13.83□□□□□ -0.2
SYNGAP1-227ENST00000638142 NANOS2P60321 138 aaKnown RBP13.83□□□□□ -0.2
SYNGAP1-227ENST00000638142 CFAP161Q6P656 301 aa13.83□□□□□ -0.2
SYNGAP1-227ENST00000638142 LYRM9A8MSI8 78 aa13.83□□□□□ -0.2
SYNGAP1-227ENST00000638142 LINC00482Q8N8I6 264 aa13.83□□□□□ -0.2
SYNGAP1-227ENST00000638142 LINC00269Q8N2A0 174 aa13.82□□□□□ -0.2
SYNGAP1-227ENST00000638142 IGHV4-28A0A0C4DH34 117 aa13.81□□□□□ -0.2
SYNGAP1-227ENST00000638142 Q8N814 137 aa13.81□□□□□ -0.2
SYNGAP1-227ENST00000638142 CHCHD10Q8WYQ3 142 aaPredicted RBP13.81□□□□□ -0.2
SYNGAP1-227ENST00000638142 JMJD7-PLA2G4BH0Y9G9 81 aa13.8□□□□□ -0.2
SYNGAP1-227ENST00000638142 MTORP42345 2549 aa13.79□□□□□ -0.2
SYNGAP1-227ENST00000638142 CCKP06307 115 aa13.79□□□□□ -0.2
SYNGAP1-227ENST00000638142 PRR3P79522 188 aaKnown RBP13.79□□□□□ -0.2
SYNGAP1-227ENST00000638142 NOTCH2Q04721 2471 aa13.78□□□□□ -0.2
SYNGAP1-227ENST00000638142 ANK3Q12955 4377 aaKnown RBP13.78□□□□□ -0.2
SYNGAP1-227ENST00000638142 KRTAP10-3P60369 221 aa13.78□□□□□ -0.2
SYNGAP1-227ENST00000638142 SERP2Q8N6R1 65 aa13.78□□□□□ -0.2
SYNGAP1-227ENST00000638142 ACANP16112 2415 aa13.78□□□□□ -0.2
SYNGAP1-227ENST00000638142 FN1P02751 2386 aaKnown RBP13.78□□□□□ -0.2
SYNGAP1-227ENST00000638142 TMEM256-PLSCR3K7ERE1 68 aa13.78□□□□□ -0.2
SYNGAP1-227ENST00000638142 REG3AQ06141 175 aa13.78□□□□□ -0.2
SYNGAP1-227ENST00000638142 ANGP03950 147 aaKnown RBP13.77□□□□□ -0.21
SYNGAP1-227ENST00000638142 ITPR2Q14571 2701 aa13.77□□□□□ -0.21
SYNGAP1-227ENST00000638142 hADV29S1A0JD25 119 aa13.76□□□□□ -0.21
SYNGAP1-227ENST00000638142 J3KT08 172 aa13.76□□□□□ -0.21
SYNGAP1-227ENST00000638142 UNC79Q9P2D8 2635 aa13.76□□□□□ -0.21
SYNGAP1-227ENST00000638142 A0A087WVE0 104 aa13.75□□□□□ -0.21
SYNGAP1-227ENST00000638142 IGLV10-54A0A075B6I4 117 aa13.74□□□□□ -0.21
SYNGAP1-227ENST00000638142 S100A7L2Q5SY68 101 aa13.74□□□□□ -0.21
SYNGAP1-227ENST00000638142 USP17L23D6RBM5 183 aa13.74□□□□□ -0.21
SYNGAP1-227ENST00000638142 RPS28P62857 69 aaKnown RBP13.74□□□□□ -0.21
SYNGAP1-227ENST00000638142 PDZD2O15018 2839 aa13.74□□□□□ -0.21
SYNGAP1-227ENST00000638142 MAST4O15021 2626 aa13.73□□□□□ -0.21
SYNGAP1-227ENST00000638142 UPK3BQ9BT76 320 aa13.73□□□□□ -0.21
SYNGAP1-227ENST00000638142 C9orf116Q5BN46 136 aaPredicted RBP13.72□□□□□ -0.21
SYNGAP1-227ENST00000638142 MUC7Q8TAX7 377 aa13.72□□□□□ -0.21
SYNGAP1-227ENST00000638142 Q8N3U1 123 aa13.72□□□□□ -0.21
SYNGAP1-227ENST00000638142 LOC107984640A0A0U1RRK4 108 aa13.71□□□□□ -0.21
SYNGAP1-227ENST00000638142 CYSTM1Q9H1C7 97 aa13.71□□□□□ -0.21
SYNGAP1-227ENST00000638142 C6orf99Q4VX62 202 aa13.71□□□□□ -0.21
SYNGAP1-227ENST00000638142 ATP5EP2Q5VTU8 51 aa13.71□□□□□ -0.21
SYNGAP1-227ENST00000638142 DAD1P61803 113 aa13.7□□□□□ -0.22
SYNGAP1-227ENST00000638142 DEFB135Q30KP9 77 aa13.7□□□□□ -0.22
SYNGAP1-227ENST00000638142 C9orf66Q5T8R8 295 aa13.7□□□□□ -0.22
SYNGAP1-227ENST00000638142 DEFB4AO15263 64 aa13.69□□□□□ -0.22
SYNGAP1-227ENST00000638142 TMEM258P61165 79 aa13.69□□□□□ -0.22
SYNGAP1-227ENST00000638142 Q8NDZ9 215 aa13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 75.6 ms