RNA–Protein interactions for RNA: ENST00000635893.1

SCN1A-211, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 168 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-211ENST00000635893 BAGE2Q86Y30 109 aa-2.37□□□□□ -2.79
SCN1A-211ENST00000635893 FAM223AQ8IWN6 122 aa-2.37□□□□□ -2.79
SCN1A-211ENST00000635893 OR8I2Q8N0Y5 310 aa-2.37□□□□□ -2.79
SCN1A-211ENST00000635893 BOLA2Q9H3K6 86 aa-2.37□□□□□ -2.79
SCN1A-211ENST00000635893 HLA-DRB4X5D2U9 266 aa-2.37□□□□□ -2.79
SCN1A-211ENST00000635893 XRN1Q8IZH2 1706 aaKnown RBP-2.37□□□□□ -2.79
SCN1A-211ENST00000635893 PBRM1Q86U86 1689 aa-2.37□□□□□ -2.79
SCN1A-211ENST00000635893 MYH13Q9UKX3 1938 aa-2.38□□□□□ -2.79
SCN1A-211ENST00000635893 APOC3P02656 99 aa-2.38□□□□□ -2.79
SCN1A-211ENST00000635893 TMEM263Q8WUH6 116 aaKnown RBP-2.38□□□□□ -2.79
SCN1A-211ENST00000635893 BANF2Q9H503 90 aa-2.38□□□□□ -2.79
SCN1A-211ENST00000635893 TPT1P8Q9HAU6 139 aa-2.38□□□□□ -2.79
SCN1A-211ENST00000635893 CALML5Q9NZT1 146 aa-2.38□□□□□ -2.79
SCN1A-211ENST00000635893 ZNF831Q5JPB2 1677 aa-2.38□□□□□ -2.79
SCN1A-211ENST00000635893 PXDNQ92626 1479 aa-2.39□□□□□ -2.79
SCN1A-211ENST00000635893 SYNMO15061 1565 aa-2.39□□□□□ -2.79
SCN1A-211ENST00000635893 UQCR11O14957 56 aa-2.39□□□□□ -2.79
SCN1A-211ENST00000635893 PFDN1O60925 122 aa-2.39□□□□□ -2.79
SCN1A-211ENST00000635893 B2MP61769 119 aa-2.39□□□□□ -2.79
SCN1A-211ENST00000635893 RPRMQ9NS64 109 aa-2.39□□□□□ -2.79
SCN1A-211ENST00000635893 LSM2Q9Y333 95 aaKnown RBP-2.39□□□□□ -2.79
SCN1A-211ENST00000635893 V9GYH0 126 aa-2.39□□□□□ -2.79
SCN1A-211ENST00000635893 CUX1P39880 1505 aa-2.39□□□□□ -2.79
SCN1A-211ENST00000635893 ANKRD36CQ5JPF3 1778 aa-2.39□□□□□ -2.79
SCN1A-211ENST00000635893 EIF3AQ14152 1382 aaKnown RBP-2.39□□□□□ -2.79
SCN1A-211ENST00000635893 RIMS1Q86UR5 1692 aaKnown RBP-2.4□□□□□ -2.79
SCN1A-211ENST00000635893 PRG4Q92954 1404 aaPredicted RBP-2.4□□□□□ -2.79
SCN1A-211ENST00000635893 SMIM24O75264 130 aa-2.4□□□□□ -2.79
SCN1A-211ENST00000635893 PAEPP09466 180 aa-2.4□□□□□ -2.79
SCN1A-211ENST00000635893 TPPP2P59282 170 aa-2.4□□□□□ -2.79
SCN1A-211ENST00000635893 RRAS2P62070 204 aaPredicted RBP-2.4□□□□□ -2.79
SCN1A-211ENST00000635893 LCN9Q8WX39 176 aa-2.4□□□□□ -2.79
SCN1A-211ENST00000635893 LINC00312Q9Y6C7 94 aa-2.4□□□□□ -2.79
SCN1A-211ENST00000635893 DIP2CQ9Y2E4 1556 aa-2.4□□□□□ -2.79
SCN1A-211ENST00000635893 LOC400499M0QZD8 3231 aa-2.41□□□□□ -2.79
SCN1A-211ENST00000635893 LRRC37AA6NMS7 1700 aa-2.41□□□□□ -2.8
SCN1A-211ENST00000635893 NWD2Q9ULI1 1742 aa-2.41□□□□□ -2.8
SCN1A-211ENST00000635893 NDUFA3O95167 84 aa-2.41□□□□□ -2.8
SCN1A-211ENST00000635893 SIX6O95475 246 aa-2.41□□□□□ -2.8
SCN1A-211ENST00000635893 SEC11AP67812 179 aa-2.41□□□□□ -2.8
SCN1A-211ENST00000635893 ERCC6Q03468 1493 aa-2.41□□□□□ -2.8
SCN1A-211ENST00000635893 SMARCA2P51531 1590 aa-2.41□□□□□ -2.8
SCN1A-211ENST00000635893 LOC100130705A0A1B0GUX0 176 aa-2.42□□□□□ -2.8
SCN1A-211ENST00000635893 DEFB136Q30KP8 78 aa-2.42□□□□□ -2.8
SCN1A-211ENST00000635893 TMEM244Q5VVB8 128 aa-2.42□□□□□ -2.8
SCN1A-211ENST00000635893 C5orf38Q86SI9 138 aa-2.42□□□□□ -2.8
SCN1A-211ENST00000635893 GID8Q9NWU2 228 aa-2.42□□□□□ -2.8
SCN1A-211ENST00000635893 ATP7BP35670 1465 aa-2.42□□□□□ -2.8
SCN1A-211ENST00000635893 C1orf167Q5SNV9 1468 aa-2.42□□□□□ -2.8
SCN1A-211ENST00000635893 PLXNC1O60486 1568 aa-2.42□□□□□ -2.8
SCN1A-211ENST00000635893 RGPD3A6NKT7 1758 aaPredicted RBP-2.42□□□□□ -2.8
SCN1A-211ENST00000635893 RGPD4Q7Z3J3 1758 aa-2.42□□□□□ -2.8
SCN1A-211ENST00000635893 PDCD11Q14690 1871 aaKnown RBP-2.42□□□□□ -2.8
SCN1A-211ENST00000635893 SHROOM2Q13796 1616 aa-2.42□□□□□ -2.8
SCN1A-211ENST00000635893 NLRP1Q9C000 1473 aa-2.43□□□□□ -2.8
SCN1A-211ENST00000635893 DPM2O94777 84 aa-2.43□□□□□ -2.8
SCN1A-211ENST00000635893 UBE2G1P62253 170 aa-2.43□□□□□ -2.8
SCN1A-211ENST00000635893 UBA52P62987 128 aaKnown RBP-2.43□□□□□ -2.8
SCN1A-211ENST00000635893 NMSQ5H8A3 153 aa-2.43□□□□□ -2.8
SCN1A-211ENST00000635893 OR9Q1Q8NGQ5 310 aa-2.43□□□□□ -2.8
SCN1A-211ENST00000635893 FAM167A-AS1Q96KT0 104 aa-2.43□□□□□ -2.8
SCN1A-211ENST00000635893 COPZ2Q9P299 210 aa-2.43□□□□□ -2.8
SCN1A-211ENST00000635893 LINC01558Q9Y6Z2 57 aa-2.43□□□□□ -2.8
SCN1A-211ENST00000635893 PLEKHH2Q8IVE3 1493 aa-2.44□□□□□ -2.8
SCN1A-211ENST00000635893 TOGARAM1Q9Y4F4 1720 aa-2.44□□□□□ -2.8
SCN1A-211ENST00000635893 SPTY2D1-AS1A0A0U1RR47 76 aa-2.44□□□□□ -2.8
SCN1A-211ENST00000635893 A0A1B0GU69 56 aa-2.44□□□□□ -2.8
SCN1A-211ENST00000635893 UBE2L5PA0A1B0GUS4 154 aa-2.44□□□□□ -2.8
SCN1A-211ENST00000635893 IGLC7A0M8Q6 106 aa-2.44□□□□□ -2.8
SCN1A-211ENST00000635893 A8MTW9 85 aa-2.44□□□□□ -2.8
SCN1A-211ENST00000635893 K7EP13 123 aa-2.44□□□□□ -2.8
SCN1A-211ENST00000635893 SNCAP37840 140 aa-2.44□□□□□ -2.8
SCN1A-211ENST00000635893 SPANXN1Q5VSR9 72 aa-2.44□□□□□ -2.8
SCN1A-211ENST00000635893 RPL7L1Q6DKI1 246 aaKnown RBP-2.44□□□□□ -2.8
SCN1A-211ENST00000635893 MNS1Q8NEH6 495 aa-2.44□□□□□ -2.8
SCN1A-211ENST00000635893 LENEPQ9Y5L5 61 aa-2.44□□□□□ -2.8
SCN1A-211ENST00000635893 OVOS2A0A0G2JMS6 1433 aa-2.44□□□□□ -2.8
SCN1A-211ENST00000635893 EDC4Q6P2E9 1401 aaKnown RBP-2.44□□□□□ -2.8
SCN1A-211ENST00000635893 IFNA17P01571 189 aa-2.45□□□□□ -2.8
SCN1A-211ENST00000635893 TRIQKQ629K1 86 aa-2.45□□□□□ -2.8
SCN1A-211ENST00000635893 PREX1Q8TCU6 1659 aa-2.45□□□□□ -2.8
SCN1A-211ENST00000635893 LY75O60449 1722 aa-2.45□□□□□ -2.8
SCN1A-211ENST00000635893 CUL7Q14999 1698 aa-2.46□□□□□ -2.8
SCN1A-211ENST00000635893 IGLV5-48A0A075B6I7 105 aa-2.46□□□□□ -2.8
SCN1A-211ENST00000635893 COX6B2Q6YFQ2 88 aa-2.46□□□□□ -2.8
SCN1A-211ENST00000635893 CHMP6Q96FZ7 201 aa-2.46□□□□□ -2.8
SCN1A-211ENST00000635893 PRO1933Q9H354 126 aa-2.46□□□□□ -2.8
SCN1A-211ENST00000635893 MAST1Q9Y2H9 1570 aa-2.46□□□□□ -2.8
SCN1A-211ENST00000635893 MAPKBP1O60336 1514 aa-2.47□□□□□ -2.8
SCN1A-211ENST00000635893 CRYBG1Q9Y4K1 1723 aa-2.47□□□□□ -2.8
SCN1A-211ENST00000635893 A6NIN4 97 aa-2.47□□□□□ -2.8
SCN1A-211ENST00000635893 SFT2D2O95562 160 aa-2.47□□□□□ -2.8
SCN1A-211ENST00000635893 MIC13Q5XKP0 118 aa-2.47□□□□□ -2.8
SCN1A-211ENST00000635893 SPTSSBQ8NFR3 76 aa-2.47□□□□□ -2.8
SCN1A-211ENST00000635893 CDC26Q8NHZ8 85 aa-2.47□□□□□ -2.8
SCN1A-211ENST00000635893 MYOZ3Q8TDC0 251 aa-2.47□□□□□ -2.8
SCN1A-211ENST00000635893 SMPXQ9UHP9 88 aa-2.47□□□□□ -2.8
SCN1A-211ENST00000635893 ATPIF1Q9UII2 106 aa-2.47□□□□□ -2.8
SCN1A-211ENST00000635893 TIMM8BQ9Y5J9 83 aaPredicted RBP-2.47□□□□□ -2.8
SCN1A-211ENST00000635893 TET3O43151 1660 aa-2.47□□□□□ -2.81
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms