RNA–Protein interactions for RNA: ENST00000617641.4

PCDHGC3-205, Transcript of protocadherin gamma subfamily C, 3, humanhuman

TSL 1 (best) BASIC

Gene PCDHGC3, Length 2,346 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGC3-205ENST00000617641 MDFIQ99750 246 aa11.84□□□□□ -0.51
PCDHGC3-205ENST00000617641 DEFB121Q5J5C9 76 aa11.83□□□□□ -0.51
PCDHGC3-205ENST00000617641 SOSTDC1Q6X4U4 206 aa11.83□□□□□ -0.52
PCDHGC3-205ENST00000617641 ERG28Q9UKR5 140 aa11.83□□□□□ -0.52
PCDHGC3-205ENST00000617641 CD164L2Q6UWJ8 174 aa11.82□□□□□ -0.52
PCDHGC3-205ENST00000617641 SPATA25Q9BR10 227 aa11.82□□□□□ -0.52
PCDHGC3-205ENST00000617641 DEFB131BA0A096LNP1 70 aa11.82□□□□□ -0.52
PCDHGC3-205ENST00000617641 KLK12Q9UKR0 248 aa11.82□□□□□ -0.52
PCDHGC3-205ENST00000617641 TM2D3Q9BRN9 247 aa11.81□□□□□ -0.52
PCDHGC3-205ENST00000617641 SS18L2Q9UHA2 77 aa11.81□□□□□ -0.52
PCDHGC3-205ENST00000617641 GAGE12HA6NDE8 117 aa11.8□□□□□ -0.52
PCDHGC3-205ENST00000617641 COX7A2LO14548 114 aa11.8□□□□□ -0.52
PCDHGC3-205ENST00000617641 C6orf226Q5I0X4 101 aa11.8□□□□□ -0.52
PCDHGC3-205ENST00000617641 PSMB2P49721 201 aa11.8□□□□□ -0.52
PCDHGC3-205ENST00000617641 Q1RN00 199 aa11.8□□□□□ -0.52
PCDHGC3-205ENST00000617641 WFDC10BQ8IUB3 73 aa11.8□□□□□ -0.52
PCDHGC3-205ENST00000617641 LINC01561Q8N1V8 128 aa11.79□□□□□ -0.52
PCDHGC3-205ENST00000617641 HUWE1Q7Z6Z7 4374 aaKnown RBP11.78□□□□□ -0.52
PCDHGC3-205ENST00000617641 FOXI1Q12951 378 aa11.78□□□□□ -0.52
PCDHGC3-205ENST00000617641 LYRM7Q5U5X0 104 aa11.78□□□□□ -0.52
PCDHGC3-205ENST00000617641 Q8IZM0 81 aa11.78□□□□□ -0.52
PCDHGC3-205ENST00000617641 MIR7-3HGQ8N6C7 128 aa11.78□□□□□ -0.52
PCDHGC3-205ENST00000617641 PRR34Q9NV39 138 aa11.78□□□□□ -0.52
PCDHGC3-205ENST00000617641 SCGB1C2P0DMR2 95 aa11.77□□□□□ -0.52
PCDHGC3-205ENST00000617641 ESRGQ1W209 222 aa11.77□□□□□ -0.52
PCDHGC3-205ENST00000617641 ENHOQ6UWT2 76 aa11.77□□□□□ -0.52
PCDHGC3-205ENST00000617641 MGAM2Q2M2H8 2515 aa11.77□□□□□ -0.53
PCDHGC3-205ENST00000617641 TCL1BO95988 128 aa11.77□□□□□ -0.53
PCDHGC3-205ENST00000617641 LINC00158P58513 81 aa11.77□□□□□ -0.53
PCDHGC3-205ENST00000617641 C2orf82Q6UX34 121 aa11.77□□□□□ -0.53
PCDHGC3-205ENST00000617641 COPS9Q8WXC6 57 aa11.77□□□□□ -0.53
PCDHGC3-205ENST00000617641 MALP21145 153 aa11.76□□□□□ -0.53
PCDHGC3-205ENST00000617641 PFN2P35080 140 aa11.76□□□□□ -0.53
PCDHGC3-205ENST00000617641 RPL13AP40429 203 aaKnown RBP11.76□□□□□ -0.53
PCDHGC3-205ENST00000617641 IBA57-AS1B1ANH7 110 aa11.75□□□□□ -0.53
PCDHGC3-205ENST00000617641 WFDC2Q14508 124 aa11.75□□□□□ -0.53
PCDHGC3-205ENST00000617641 KIAA0087Q14695 138 aa11.75□□□□□ -0.53
PCDHGC3-205ENST00000617641 TRIAP1O43715 76 aa11.74□□□□□ -0.53
PCDHGC3-205ENST00000617641 UBE2WQ96B02 151 aa11.74□□□□□ -0.53
PCDHGC3-205ENST00000617641 PRO0461Q9UI25 63 aa11.74□□□□□ -0.53
PCDHGC3-205ENST00000617641 F8W1H4 67 aa11.74□□□□□ -0.53
PCDHGC3-205ENST00000617641 TRBV20-1A0A075B6N2 111 aa11.72□□□□□ -0.53
PCDHGC3-205ENST00000617641 CRPP02741 224 aa11.72□□□□□ -0.53
PCDHGC3-205ENST00000617641 TRBV30A0A0K0K1B3 111 aa11.72□□□□□ -0.53
PCDHGC3-205ENST00000617641 TRAV10A0A0B4J240 114 aa11.71□□□□□ -0.53
PCDHGC3-205ENST00000617641 PPDPFQ9H3Y8 114 aa11.71□□□□□ -0.53
PCDHGC3-205ENST00000617641 J3QR89 54 aa11.71□□□□□ -0.54
PCDHGC3-205ENST00000617641 CCL18P55774 89 aa11.7□□□□□ -0.54
PCDHGC3-205ENST00000617641 SND1-IT1Q9HBX3 110 aa11.69□□□□□ -0.54
PCDHGC3-205ENST00000617641 KLK5Q9Y337 293 aaPredicted RBP11.69□□□□□ -0.54
PCDHGC3-205ENST00000617641 CXCL5P42830 114 aa11.68□□□□□ -0.54
PCDHGC3-205ENST00000617641 SMCPP49901 116 aaPredicted RBP11.68□□□□□ -0.54
PCDHGC3-205ENST00000617641 TRAV8-4A0A0B4J246 113 aa11.68□□□□□ -0.54
PCDHGC3-205ENST00000617641 SPAG11BQ08648 103 aa11.68□□□□□ -0.54
PCDHGC3-205ENST00000617641 C6orf223Q8N319 242 aa11.68□□□□□ -0.54
PCDHGC3-205ENST00000617641 LINC00526Q96FQ7 95 aa11.68□□□□□ -0.54
PCDHGC3-205ENST00000617641 ETDBQ3ZM63 59 aa11.66□□□□□ -0.54
PCDHGC3-205ENST00000617641 C9orf116Q5BN46 136 aaPredicted RBP11.66□□□□□ -0.54
PCDHGC3-205ENST00000617641 SMIM20Q8N5G0 67 aa11.66□□□□□ -0.54
PCDHGC3-205ENST00000617641 IGKV2-28A0A075B6P5 120 aa11.65□□□□□ -0.54
PCDHGC3-205ENST00000617641 IGKV2D-28P01615 120 aa11.65□□□□□ -0.54
PCDHGC3-205ENST00000617641 LINC01556Q5JQF7 62 aa11.65□□□□□ -0.54
PCDHGC3-205ENST00000617641 COX6CP09669 75 aa11.65□□□□□ -0.54
PCDHGC3-205ENST00000617641 C15orf53Q8NAA6 179 aa11.65□□□□□ -0.54
PCDHGC3-205ENST00000617641 ATXN8Q156A1 80 aa11.64□□□□□ -0.55
PCDHGC3-205ENST00000617641 C10orf25Q5T742 122 aa11.64□□□□□ -0.55
PCDHGC3-205ENST00000617641 LINC00337Q8N6G1 96 aa11.64□□□□□ -0.55
PCDHGC3-205ENST00000617641 KRTAP26-1Q6PEX3 210 aa11.64□□□□□ -0.55
PCDHGC3-205ENST00000617641 UNQ6190/PRO20217Q6UXQ8 127 aa11.64□□□□□ -0.55
PCDHGC3-205ENST00000617641 CLEC2BQ92478 149 aa11.64□□□□□ -0.55
PCDHGC3-205ENST00000617641 TRAV13-2A0A0B4J235 113 aa11.62□□□□□ -0.55
PCDHGC3-205ENST00000617641 C9JAW5 83 aa11.62□□□□□ -0.55
PCDHGC3-205ENST00000617641 COX17Q14061 63 aa11.61□□□□□ -0.55
PCDHGC3-205ENST00000617641 LINC00588Q9Y4M8 146 aa11.61□□□□□ -0.55
PCDHGC3-205ENST00000617641 DNAH9Q9NYC9 4486 aa11.61□□□□□ -0.55
PCDHGC3-205ENST00000617641 LINC01620Q4KN68 170 aa11.61□□□□□ -0.55
PCDHGC3-205ENST00000617641 COL7A1Q02388 2944 aa11.61□□□□□ -0.55
PCDHGC3-205ENST00000617641 B5MCH6 92 aa11.6□□□□□ -0.55
PCDHGC3-205ENST00000617641 DNAH10OSP0CZ25 163 aa11.6□□□□□ -0.55
PCDHGC3-205ENST00000617641 SLC25A20O43772 301 aa11.59□□□□□ -0.55
PCDHGC3-205ENST00000617641 HIGD2BQ4VC39 106 aa11.58□□□□□ -0.56
PCDHGC3-205ENST00000617641 C1orf43Q9BWL3 253 aa11.58□□□□□ -0.56
PCDHGC3-205ENST00000617641 LST1O00453 97 aa11.58□□□□□ -0.56
PCDHGC3-205ENST00000617641 NTN5Q8WTR8 489 aaPredicted RBP11.58□□□□□ -0.56
PCDHGC3-205ENST00000617641 IGKV2D-24A0A075B6R9 120 aa11.57□□□□□ -0.56
PCDHGC3-205ENST00000617641 ANAPC13Q9BS18 74 aa11.57□□□□□ -0.56
PCDHGC3-205ENST00000617641 Q9HAA7 133 aa11.57□□□□□ -0.56
PCDHGC3-205ENST00000617641 PRR3P79522 188 aaKnown RBP11.55□□□□□ -0.56
PCDHGC3-205ENST00000617641 C15orf56Q8N910 161 aa11.55□□□□□ -0.56
PCDHGC3-205ENST00000617641 B9D2Q9BPU9 175 aa11.55□□□□□ -0.56
PCDHGC3-205ENST00000617641 OR13C6PQ8NH95 151 aa11.55□□□□□ -0.56
PCDHGC3-205ENST00000617641 SMIM11BQ8TCY0 68 aa11.55□□□□□ -0.56
PCDHGC3-205ENST00000617641 C6orf48Q9UBA6 75 aa11.55□□□□□ -0.56
PCDHGC3-205ENST00000617641 ZNF561-AS1K7EIQ3 104 aa11.54□□□□□ -0.56
PCDHGC3-205ENST00000617641 RPL28P46779 137 aaKnown RBP11.54□□□□□ -0.56
PCDHGC3-205ENST00000617641 ANKRD29Q8N6D5 301 aa11.54□□□□□ -0.56
PCDHGC3-205ENST00000617641 GVQW2A0A096LPI5 108 aaPredicted RBP11.53□□□□□ -0.56
PCDHGC3-205ENST00000617641 TRBV10-2A0A0K0K1G8 114 aa11.53□□□□□ -0.56
PCDHGC3-205ENST00000617641 TEN1Q86WV5 123 aa11.53□□□□□ -0.56
PCDHGC3-205ENST00000617641 Q8NDZ9 215 aa11.53□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms