RNA–Protein interactions for RNA: ENST00000617451.4

PTPRF-216, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5 BASIC

Gene PTPRF, Length 1,129 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-216ENST00000617451 HERVK_113P63121 156 aa14.74□□□□□ -0.05
PTPRF-216ENST00000617451 CDKN2A-AS1Q9UH64 79 aa14.74□□□□□ -0.05
PTPRF-216ENST00000617451 F8VRH5 84 aa14.73□□□□□ -0.05
PTPRF-216ENST00000617451 TSPAN13O95857 204 aa14.73□□□□□ -0.05
PTPRF-216ENST00000617451 MRPL55Q7Z7F7 128 aaKnown RBP14.73□□□□□ -0.05
PTPRF-216ENST00000617451 A0A1B0GVG6 124 aa14.72□□□□□ -0.05
PTPRF-216ENST00000617451 SEC11AP67812 179 aa14.72□□□□□ -0.05
PTPRF-216ENST00000617451 A0A087X002 238 aa14.71□□□□□ -0.05
PTPRF-216ENST00000617451 RPL28P46779 137 aaKnown RBP14.71□□□□□ -0.05
PTPRF-216ENST00000617451 BCE1O60756 84 aa14.7□□□□□ -0.06
PTPRF-216ENST00000617451 PAPPA-AS1Q5QFB9 102 aa14.7□□□□□ -0.06
PTPRF-216ENST00000617451 GEMIN7Q9H840 131 aaKnown RBP14.7□□□□□ -0.06
PTPRF-216ENST00000617451 NXT2Q9NPJ8 142 aaKnown RBP14.7□□□□□ -0.06
PTPRF-216ENST00000617451 ANAPC16Q96DE5 110 aa14.69□□□□□ -0.06
PTPRF-216ENST00000617451 PNRC1Q12796 327 aaPredicted RBP14.68□□□□□ -0.06
PTPRF-216ENST00000617451 TIMM17AQ99595 171 aa14.68□□□□□ -0.06
PTPRF-216ENST00000617451 MT-ND4LP03901 98 aa14.67□□□□□ -0.06
PTPRF-216ENST00000617451 CXCL5P42830 114 aa14.67□□□□□ -0.06
PTPRF-216ENST00000617451 A0A0U1RQV1 116 aa14.66□□□□□ -0.06
PTPRF-216ENST00000617451 CRYGAP11844 174 aa14.66□□□□□ -0.06
PTPRF-216ENST00000617451 G0S2P27469 103 aa14.66□□□□□ -0.06
PTPRF-216ENST00000617451 TYMSOSQ8TAI1 123 aa14.65□□□□□ -0.06
PTPRF-216ENST00000617451 TOMM6Q96B49 74 aa14.65□□□□□ -0.06
PTPRF-216ENST00000617451 LINC00167Q96N53 147 aa14.65□□□□□ -0.06
PTPRF-216ENST00000617451 RPL37AP8A6NKH3 93 aa14.63□□□□□ -0.07
PTPRF-216ENST00000617451 SMIM1B2RUZ4 78 aa14.63□□□□□ -0.07
PTPRF-216ENST00000617451 PDZD11Q5EBL8 140 aa14.61□□□□□ -0.07
PTPRF-216ENST00000617451 ERASQ7Z444 233 aa14.61□□□□□ -0.07
PTPRF-216ENST00000617451 FAT4Q6V0I7 4981 aa14.6□□□□□ -0.07
PTPRF-216ENST00000617451 COX7B2Q8TF08 81 aa14.6□□□□□ -0.07
PTPRF-216ENST00000617451 GAGE10A6NGK3 116 aa14.59□□□□□ -0.07
PTPRF-216ENST00000617451 ANAPC11Q9NYG5 84 aa14.59□□□□□ -0.07
PTPRF-216ENST00000617451 IGLV5-37A0A075B6J1 123 aa14.58□□□□□ -0.08
PTPRF-216ENST00000617451 IGLV5-45A0A087WSX0 123 aa14.58□□□□□ -0.08
PTPRF-216ENST00000617451 TINCRA0A1B0GVN0 87 aa14.58□□□□□ -0.08
PTPRF-216ENST00000617451 KRTAP13-1Q8IUC0 172 aa14.58□□□□□ -0.08
PTPRF-216ENST00000617451 SCGB3A1Q96QR1 104 aa14.58□□□□□ -0.08
PTPRF-216ENST00000617451 ADCYAP1P18509 176 aa14.56□□□□□ -0.08
PTPRF-216ENST00000617451 KRTAP13-2Q52LG2 175 aa14.56□□□□□ -0.08
PTPRF-216ENST00000617451 KIAA1644Q3SXP7 199 aa14.55□□□□□ -0.08
PTPRF-216ENST00000617451 RAB5BP61020 215 aa14.54□□□□□ -0.08
PTPRF-216ENST00000617451 UBE2AP49459 152 aa14.53□□□□□ -0.08
PTPRF-216ENST00000617451 NKAPP1Q8N9T2 125 aa14.53□□□□□ -0.08
PTPRF-216ENST00000617451 SPINK8P0C7L1 97 aa14.52□□□□□ -0.09
PTPRF-216ENST00000617451 FAM229BQ4G0N7 80 aa14.52□□□□□ -0.09
PTPRF-216ENST00000617451 CST9LQ9H4G1 147 aa14.52□□□□□ -0.09
PTPRF-216ENST00000617451 KRTAP9-2Q9BYQ4 174 aa14.51□□□□□ -0.09
PTPRF-216ENST00000617451 LINC01549A6NIU2 74 aa14.5□□□□□ -0.09
PTPRF-216ENST00000617451 MUC17Q685J3 4493 aa14.49□□□□□ -0.09
PTPRF-216ENST00000617451 LINC01546A6NGU7 62 aa14.49□□□□□ -0.09
PTPRF-216ENST00000617451 RETNLBQ9BQ08 111 aa14.49□□□□□ -0.09
PTPRF-216ENST00000617451 LCE2AQ5TA79 106 aaPredicted RBP14.48□□□□□ -0.09
PTPRF-216ENST00000617451 LINC00304Q8N9R0 145 aa14.48□□□□□ -0.09
PTPRF-216ENST00000617451 IGKV2-28A0A075B6P5 120 aa14.47□□□□□ -0.09
PTPRF-216ENST00000617451 SCO1O75880 301 aa14.47□□□□□ -0.09
PTPRF-216ENST00000617451 IGKV2D-28P01615 120 aa14.47□□□□□ -0.09
PTPRF-216ENST00000617451 MRPL18Q9H0U6 180 aaKnown RBP14.47□□□□□ -0.09
PTPRF-216ENST00000617451 RAB14P61106 215 aa14.46□□□□□ -0.09
PTPRF-216ENST00000617451 PMVKQ15126 192 aa14.46□□□□□ -0.09
PTPRF-216ENST00000617451 ATP5LO75964 103 aa14.45□□□□□ -0.1
PTPRF-216ENST00000617451 TRAV9-1A0A075B6T8 112 aa14.44□□□□□ -0.1
PTPRF-216ENST00000617451 IGKV2D-26A0A0A0MRZ7 120 aa14.43□□□□□ -0.1
PTPRF-216ENST00000617451 H3BRM9 83 aa14.43□□□□□ -0.1
PTPRF-216ENST00000617451 PRLHP81277 87 aa14.42□□□□□ -0.1
PTPRF-216ENST00000617451 PFN2P35080 140 aa14.41□□□□□ -0.1
PTPRF-216ENST00000617451 TPRXLQ17RH7 258 aa14.41□□□□□ -0.1
PTPRF-216ENST00000617451 GNB1LQ9BYB4 327 aa14.41□□□□□ -0.1
PTPRF-216ENST00000617451 IGLV5-39A0A0G2JS06 123 aa14.4□□□□□ -0.1
PTPRF-216ENST00000617451 VPREB1P12018 145 aa14.4□□□□□ -0.1
PTPRF-216ENST00000617451 CTAG1AP78358 180 aa14.4□□□□□ -0.1
PTPRF-216ENST00000617451 TMEM126AQ9H061 195 aa14.4□□□□□ -0.1
PTPRF-216ENST00000617451 FAM19A1Q7Z5A9 133 aa14.39□□□□□ -0.11
PTPRF-216ENST00000617451 CDIP1Q9H305 208 aa14.39□□□□□ -0.11
PTPRF-216ENST00000617451 TMEM238C9JI98 176 aa14.38□□□□□ -0.11
PTPRF-216ENST00000617451 SND1-IT1Q9HBX3 110 aa14.38□□□□□ -0.11
PTPRF-216ENST00000617451 IGLV7-46A0A075B6I9 117 aa14.37□□□□□ -0.11
PTPRF-216ENST00000617451 IGLC3P0DOY3 106 aa14.37□□□□□ -0.11
PTPRF-216ENST00000617451 FA2HQ7L5A8 372 aa14.37□□□□□ -0.11
PTPRF-216ENST00000617451 ERG28Q9UKR5 140 aa14.36□□□□□ -0.11
PTPRF-216ENST00000617451 M0R378 163 aa14.35□□□□□ -0.11
PTPRF-216ENST00000617451 RPL24P83731 157 aaKnown RBP14.35□□□□□ -0.11
PTPRF-216ENST00000617451 PLEKHB2Q96CS7 222 aa14.35□□□□□ -0.11
PTPRF-216ENST00000617451 SMCO4Q9NRQ5 59 aa14.35□□□□□ -0.11
PTPRF-216ENST00000617451 COX17Q14061 63 aa14.34□□□□□ -0.11
PTPRF-216ENST00000617451 CLLU1Q5K131 121 aa14.33□□□□□ -0.12
PTPRF-216ENST00000617451 ZNF22P17026 224 aaPredicted RBP14.32□□□□□ -0.12
PTPRF-216ENST00000617451 S100PP25815 95 aa14.32□□□□□ -0.12
PTPRF-216ENST00000617451 Q8NDZ9 215 aa14.32□□□□□ -0.12
PTPRF-216ENST00000617451 TMEM218A2RU14 115 aa14.31□□□□□ -0.12
PTPRF-216ENST00000617451 C3orf22Q8N5N4 141 aa14.31□□□□□ -0.12
PTPRF-216ENST00000617451 NDUFA6P56556 154 aa14.3□□□□□ -0.12
PTPRF-216ENST00000617451 COX19Q49B96 90 aa14.3□□□□□ -0.12
PTPRF-216ENST00000617451 UQCC3Q6UW78 93 aa14.3□□□□□ -0.12
PTPRF-216ENST00000617451 CBLN2Q8IUK8 224 aa14.3□□□□□ -0.12
PTPRF-216ENST00000617451 A0A096LNJ9 63 aa14.29□□□□□ -0.12
PTPRF-216ENST00000617451 FABP9Q0Z7S8 132 aa14.29□□□□□ -0.12
PTPRF-216ENST00000617451 ZNF625Q96I27 306 aaPredicted RBP14.29□□□□□ -0.12
PTPRF-216ENST00000617451 PPDPFQ9H3Y8 114 aa14.28□□□□□ -0.12
PTPRF-216ENST00000617451 SPAG11AQ6PDA7 123 aa14.25□□□□□ -0.13
PTPRF-216ENST00000617451 HIGD2AQ9BW72 106 aa14.25□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 66 ms