RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 Q8IZM0 81 aa11.68□□□□□ -0.54
CCDC28A-203ENST00000617445 SNAPINO95295 136 aa11.67□□□□□ -0.54
CCDC28A-203ENST00000617445 IGLV7-43P04211 117 aa11.67□□□□□ -0.54
CCDC28A-203ENST00000617445 ERASQ7Z444 233 aa11.67□□□□□ -0.54
CCDC28A-203ENST00000617445 FAM19A5Q7Z5A7 132 aaPredicted RBP11.67□□□□□ -0.54
CCDC28A-203ENST00000617445 SVBPQ8N300 66 aa11.67□□□□□ -0.54
CCDC28A-203ENST00000617445 DIRC1Q969H9 104 aa11.67□□□□□ -0.54
CCDC28A-203ENST00000617445 GEMIN7Q9H840 131 aaKnown RBP11.67□□□□□ -0.54
CCDC28A-203ENST00000617445 ALKBH7Q9BT30 221 aaPredicted RBP11.66□□□□□ -0.54
CCDC28A-203ENST00000617445 TOMM7Q9P0U1 55 aa11.65□□□□□ -0.54
CCDC28A-203ENST00000617445 M0QXV9 152 aa11.64□□□□□ -0.55
CCDC28A-203ENST00000617445 FABP9Q0Z7S8 132 aa11.64□□□□□ -0.55
CCDC28A-203ENST00000617445 SCGB3A1Q96QR1 104 aa11.64□□□□□ -0.55
CCDC28A-203ENST00000617445 MRPL18Q9H0U6 180 aaKnown RBP11.64□□□□□ -0.55
CCDC28A-203ENST00000617445 CDKN2A-AS1Q9UH64 79 aa11.64□□□□□ -0.55
CCDC28A-203ENST00000617445 LINC01546A6NGU7 62 aa11.63□□□□□ -0.55
CCDC28A-203ENST00000617445 ODF1Q14990 250 aa11.63□□□□□ -0.55
CCDC28A-203ENST00000617445 KRTAP7-1Q8IUC3 87 aa11.63□□□□□ -0.55
CCDC28A-203ENST00000617445 CXCL5P42830 114 aa11.62□□□□□ -0.55
CCDC28A-203ENST00000617445 UBE2BP63146 152 aa11.62□□□□□ -0.55
CCDC28A-203ENST00000617445 C9orf129Q5T035 196 aaKnown RBP11.62□□□□□ -0.55
CCDC28A-203ENST00000617445 F8VRH5 84 aa11.61□□□□□ -0.55
CCDC28A-203ENST00000617445 TINCRA0A1B0GVN0 87 aa11.6□□□□□ -0.55
CCDC28A-203ENST00000617445 KRTAP11-1Q8IUC1 163 aa11.6□□□□□ -0.55
CCDC28A-203ENST00000617445 UBR4Q5T4S7 5183 aa11.59□□□□□ -0.55
CCDC28A-203ENST00000617445 H0Y9J4 135 aa11.59□□□□□ -0.55
CCDC28A-203ENST00000617445 LINC00469Q8N7U9 141 aa11.59□□□□□ -0.55
CCDC28A-203ENST00000617445 TRAPPC1Q9Y5R8 145 aa11.59□□□□□ -0.55
CCDC28A-203ENST00000617445 PDZD11Q5EBL8 140 aa11.58□□□□□ -0.56
CCDC28A-203ENST00000617445 IGLV5-45A0A087WSX0 123 aa11.57□□□□□ -0.56
CCDC28A-203ENST00000617445 LBHQ53QV2 105 aaPredicted RBP11.57□□□□□ -0.56
CCDC28A-203ENST00000617445 FA2HQ7L5A8 372 aa11.57□□□□□ -0.56
CCDC28A-203ENST00000617445 SMIM1B2RUZ4 78 aa11.56□□□□□ -0.56
CCDC28A-203ENST00000617445 CST9LQ9H4G1 147 aa11.56□□□□□ -0.56
CCDC28A-203ENST00000617445 SMCO4Q9NRQ5 59 aa11.56□□□□□ -0.56
CCDC28A-203ENST00000617445 PMVKQ15126 192 aa11.55□□□□□ -0.56
CCDC28A-203ENST00000617445 NUPR1O60356 82 aa11.54□□□□□ -0.56
CCDC28A-203ENST00000617445 COX7B2Q8TF08 81 aa11.54□□□□□ -0.56
CCDC28A-203ENST00000617445 XAGE1AQ9HD64 81 aa11.54□□□□□ -0.56
CCDC28A-203ENST00000617445 TP73-AS1Q9UF72 201 aa11.54□□□□□ -0.56
CCDC28A-203ENST00000617445 C22orf24Q9Y442 160 aa11.54□□□□□ -0.56
CCDC28A-203ENST00000617445 IGLV1-50A0A075B6I6 118 aa11.53□□□□□ -0.56
CCDC28A-203ENST00000617445 C18orf32Q8TCD1 76 aa11.52□□□□□ -0.57
CCDC28A-203ENST00000617445 H3BRM9 83 aa11.51□□□□□ -0.57
CCDC28A-203ENST00000617445 PRR26Q8N8Z3 221 aa11.51□□□□□ -0.57
CCDC28A-203ENST00000617445 YPEL4Q96NS1 127 aa11.51□□□□□ -0.57
CCDC28A-203ENST00000617445 LRP2P98164 4655 aa11.5□□□□□ -0.57
CCDC28A-203ENST00000617445 ZNF861PO60384 105 aa11.5□□□□□ -0.57
CCDC28A-203ENST00000617445 LINC00614P0C842 121 aa11.5□□□□□ -0.57
CCDC28A-203ENST00000617445 MRPL55Q7Z7F7 128 aaKnown RBP11.49□□□□□ -0.57
CCDC28A-203ENST00000617445 KRTAP1-4P0C5Y4 121 aa11.48□□□□□ -0.57
CCDC28A-203ENST00000617445 RPL13AP40429 203 aaKnown RBP11.48□□□□□ -0.57
CCDC28A-203ENST00000617445 RAB5BP61020 215 aa11.48□□□□□ -0.57
CCDC28A-203ENST00000617445 SPINK8P0C7L1 97 aa11.47□□□□□ -0.57
CCDC28A-203ENST00000617445 SLC7A5P1Q8MH63 180 aa11.47□□□□□ -0.57
CCDC28A-203ENST00000617445 URB1-AS1Q96HZ7 61 aa11.47□□□□□ -0.57
CCDC28A-203ENST00000617445 IGLC3P0DOY3 106 aa11.46□□□□□ -0.57
CCDC28A-203ENST00000617445 ATP5LO75964 103 aa11.45□□□□□ -0.58
CCDC28A-203ENST00000617445 HBDP02042 147 aa11.45□□□□□ -0.58
CCDC28A-203ENST00000617445 CBLN2Q8IUK8 224 aa11.45□□□□□ -0.58
CCDC28A-203ENST00000617445 A0A096LNJ9 63 aa11.44□□□□□ -0.58
CCDC28A-203ENST00000617445 RPL28P46779 137 aaKnown RBP11.44□□□□□ -0.58
CCDC28A-203ENST00000617445 IGLV5-37A0A075B6J1 123 aa11.43□□□□□ -0.58
CCDC28A-203ENST00000617445 IGLV5-39A0A0G2JS06 123 aa11.43□□□□□ -0.58
CCDC28A-203ENST00000617445 BCE1O60756 84 aa11.43□□□□□ -0.58
CCDC28A-203ENST00000617445 NDUFA6P56556 154 aa11.43□□□□□ -0.58
CCDC28A-203ENST00000617445 LINC00167Q96N53 147 aa11.42□□□□□ -0.58
CCDC28A-203ENST00000617445 PMCHL1Q16048 86 aa11.4□□□□□ -0.58
CCDC28A-203ENST00000617445 SFTA2Q6UW10 78 aa11.4□□□□□ -0.58
CCDC28A-203ENST00000617445 NKAPP1Q8N9T2 125 aa11.4□□□□□ -0.58
CCDC28A-203ENST00000617445 CHCHD1Q96BP2 118 aaKnown RBP11.4□□□□□ -0.58
CCDC28A-203ENST00000617445 ZNF22P17026 224 aaPredicted RBP11.39□□□□□ -0.59
CCDC28A-203ENST00000617445 COX17Q14061 63 aa11.39□□□□□ -0.59
CCDC28A-203ENST00000617445 RPL37AP8A6NKH3 93 aa11.38□□□□□ -0.59
CCDC28A-203ENST00000617445 BAGE3Q86Y29 109 aa11.37□□□□□ -0.59
CCDC28A-203ENST00000617445 GAGE10A6NGK3 116 aa11.35□□□□□ -0.59
CCDC28A-203ENST00000617445 TRGC2P03986 189 aa11.35□□□□□ -0.59
CCDC28A-203ENST00000617445 PFN2P35080 140 aa11.35□□□□□ -0.59
CCDC28A-203ENST00000617445 ERG28Q9UKR5 140 aa11.35□□□□□ -0.59
CCDC28A-203ENST00000617445 RPL24P83731 157 aaKnown RBP11.34□□□□□ -0.59
CCDC28A-203ENST00000617445 C11orf86A6NJI1 115 aa11.33□□□□□ -0.6
CCDC28A-203ENST00000617445 TMEM170BQ5T4T1 132 aa11.33□□□□□ -0.6
CCDC28A-203ENST00000617445 SND1-IT1Q9HBX3 110 aa11.33□□□□□ -0.6
CCDC28A-203ENST00000617445 CRYGAP11844 174 aa11.32□□□□□ -0.6
CCDC28A-203ENST00000617445 UBE2AP49459 152 aa11.32□□□□□ -0.6
CCDC28A-203ENST00000617445 COLCA2A8K830 154 aa11.31□□□□□ -0.6
CCDC28A-203ENST00000617445 HSBP1O75506 76 aa11.31□□□□□ -0.6
CCDC28A-203ENST00000617445 KRTAP13-1Q8IUC0 172 aa11.31□□□□□ -0.6
CCDC28A-203ENST00000617445 CHTOPQ9Y3Y2 248 aaKnown RBP11.31□□□□□ -0.6
CCDC28A-203ENST00000617445 TRAV12-1A0A0B4J245 112 aa11.3□□□□□ -0.6
CCDC28A-203ENST00000617445 VPREB1P12018 145 aa11.3□□□□□ -0.6
CCDC28A-203ENST00000617445 IFI27L1Q96BM0 104 aa11.3□□□□□ -0.6
CCDC28A-203ENST00000617445 ZNF625Q96I27 306 aaPredicted RBP11.29□□□□□ -0.6
CCDC28A-203ENST00000617445 IGKV2-28A0A075B6P5 120 aa11.28□□□□□ -0.6
CCDC28A-203ENST00000617445 IGKV2D-28P01615 120 aa11.28□□□□□ -0.6
CCDC28A-203ENST00000617445 A0A087X002 238 aa11.27□□□□□ -0.61
CCDC28A-203ENST00000617445 FAM19A2Q8N3H0 131 aa11.27□□□□□ -0.61
CCDC28A-203ENST00000617445 TYMSOSQ8TAI1 123 aa11.27□□□□□ -0.61
CCDC28A-203ENST00000617445 FAM229BQ4G0N7 80 aa11.26□□□□□ -0.61
CCDC28A-203ENST00000617445 TMEM223A0PJW6 202 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 60.7 ms