RNA–Protein interactions for RNA: ENST00000601816.3

PNKP-216, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 682 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-216ENST00000601816 CDKN2A-AS1Q9UH64 79 aa16■□□□□ 0.15
PNKP-216ENST00000601816 RHEBQ15382 184 aa15.99■□□□□ 0.15
PNKP-216ENST00000601816 C10orf91Q5T1B1 145 aa15.99■□□□□ 0.15
PNKP-216ENST00000601816 LINC01549A6NIU2 74 aa15.98■□□□□ 0.15
PNKP-216ENST00000601816 RPS10P5Q9NQ39 176 aa15.98■□□□□ 0.15
PNKP-216ENST00000601816 CARHSP1Q9Y2V2 147 aaKnown RBP15.98■□□□□ 0.15
PNKP-216ENST00000601816 LINC01546A6NGU7 62 aa15.97■□□□□ 0.15
PNKP-216ENST00000601816 MRPL18Q9H0U6 180 aaKnown RBP15.97■□□□□ 0.15
PNKP-216ENST00000601816 M0QXV9 152 aa15.96■□□□□ 0.15
PNKP-216ENST00000601816 FABP9Q0Z7S8 132 aa15.96■□□□□ 0.15
PNKP-216ENST00000601816 KRTAP10-8P60410 259 aa15.95■□□□□ 0.14
PNKP-216ENST00000601816 C9orf129Q5T035 196 aaKnown RBP15.95■□□□□ 0.14
PNKP-216ENST00000601816 FA2HQ7L5A8 372 aa15.95■□□□□ 0.14
PNKP-216ENST00000601816 KRTAP7-1Q8IUC3 87 aa15.95■□□□□ 0.14
PNKP-216ENST00000601816 LINC00469Q8N7U9 141 aa15.95■□□□□ 0.14
PNKP-216ENST00000601816 KRTAP11-1Q8IUC1 163 aa15.94■□□□□ 0.14
PNKP-216ENST00000601816 SMCO4Q9NRQ5 59 aa15.94■□□□□ 0.14
PNKP-216ENST00000601816 IGLV7-43P04211 117 aa15.93■□□□□ 0.14
PNKP-216ENST00000601816 UBE2BP63146 152 aa15.92■□□□□ 0.14
PNKP-216ENST00000601816 TINCRA0A1B0GVN0 87 aa15.91■□□□□ 0.14
PNKP-216ENST00000601816 F8VRH5 84 aa15.91■□□□□ 0.14
PNKP-216ENST00000601816 CXCL5P42830 114 aa15.9■□□□□ 0.14
PNKP-216ENST00000601816 CST9LQ9H4G1 147 aa15.9■□□□□ 0.14
PNKP-216ENST00000601816 SMIM1B2RUZ4 78 aa15.89■□□□□ 0.13
PNKP-216ENST00000601816 DIRC1Q969H9 104 aa15.89■□□□□ 0.13
PNKP-216ENST00000601816 IGLV5-45A0A087WSX0 123 aa15.88■□□□□ 0.13
PNKP-216ENST00000601816 ODF1Q14990 250 aa15.88■□□□□ 0.13
PNKP-216ENST00000601816 PDZD11Q5EBL8 140 aa15.88■□□□□ 0.13
PNKP-216ENST00000601816 PMVKQ15126 192 aa15.87■□□□□ 0.13
PNKP-216ENST00000601816 XAGE1AQ9HD64 81 aa15.86■□□□□ 0.13
PNKP-216ENST00000601816 COX7B2Q8TF08 81 aa15.85■□□□□ 0.13
PNKP-216ENST00000601816 TRAPPC1Q9Y5R8 145 aa15.84■□□□□ 0.13
PNKP-216ENST00000601816 H0Y9J4 135 aa15.82■□□□□ 0.12
PNKP-216ENST00000601816 APOC3P02656 99 aa15.82■□□□□ 0.12
PNKP-216ENST00000601816 SPINK8P0C7L1 97 aa15.82■□□□□ 0.12
PNKP-216ENST00000601816 C22orf24Q9Y442 160 aa15.81■□□□□ 0.12
PNKP-216ENST00000601816 UBR4Q5T4S7 5183 aa15.81■□□□□ 0.12
PNKP-216ENST00000601816 NDUFA5Q16718 116 aa15.8■□□□□ 0.12
PNKP-216ENST00000601816 C18orf32Q8TCD1 76 aa15.8■□□□□ 0.12
PNKP-216ENST00000601816 H3BRM9 83 aa15.79■□□□□ 0.12
PNKP-216ENST00000601816 LINC00614P0C842 121 aa15.79■□□□□ 0.12
PNKP-216ENST00000601816 LBHQ53QV2 105 aaPredicted RBP15.79■□□□□ 0.12
PNKP-216ENST00000601816 A0A096LNJ9 63 aa15.78■□□□□ 0.12
PNKP-216ENST00000601816 SNAPINO95295 136 aa15.78■□□□□ 0.12
PNKP-216ENST00000601816 SVBPQ8N300 66 aa15.78■□□□□ 0.12
PNKP-216ENST00000601816 URB1-AS1Q96HZ7 61 aa15.78■□□□□ 0.12
PNKP-216ENST00000601816 NDUFA6P56556 154 aa15.77■□□□□ 0.12
PNKP-216ENST00000601816 HBDP02042 147 aa15.76■□□□□ 0.11
PNKP-216ENST00000601816 IGLC3P0DOY3 106 aa15.75■□□□□ 0.11
PNKP-216ENST00000601816 TP73-AS1Q9UF72 201 aa15.75■□□□□ 0.11
PNKP-216ENST00000601816 PRR26Q8N8Z3 221 aa15.74■□□□□ 0.11
PNKP-216ENST00000601816 NUPR1O60356 82 aa15.73■□□□□ 0.11
PNKP-216ENST00000601816 RAB5BP61020 215 aa15.73■□□□□ 0.11
PNKP-216ENST00000601816 PMCHL1Q16048 86 aa15.73■□□□□ 0.11
PNKP-216ENST00000601816 MRPL55Q7Z7F7 128 aaKnown RBP15.73■□□□□ 0.11
PNKP-216ENST00000601816 ATP5LO75964 103 aa15.72■□□□□ 0.11
PNKP-216ENST00000601816 ZNF22P17026 224 aaPredicted RBP15.7■□□□□ 0.1
PNKP-216ENST00000601816 IGLV5-39A0A0G2JS06 123 aa15.69■□□□□ 0.1
PNKP-216ENST00000601816 ZNF861PO60384 105 aa15.69■□□□□ 0.1
PNKP-216ENST00000601816 KRTAP1-4P0C5Y4 121 aa15.69■□□□□ 0.1
PNKP-216ENST00000601816 IGLV1-50A0A075B6I6 118 aa15.68■□□□□ 0.1
PNKP-216ENST00000601816 LRP2P98164 4655 aa15.66■□□□□ 0.1
PNKP-216ENST00000601816 BAGE3Q86Y29 109 aa15.66■□□□□ 0.1
PNKP-216ENST00000601816 LINC00167Q96N53 147 aa15.65■□□□□ 0.1
PNKP-216ENST00000601816 YPEL4Q96NS1 127 aa15.64■□□□□ 0.09
PNKP-216ENST00000601816 IGLV5-37A0A075B6J1 123 aa15.63■□□□□ 0.09
PNKP-216ENST00000601816 C11orf86A6NJI1 115 aa15.63■□□□□ 0.09
PNKP-216ENST00000601816 RPL37AP8A6NKH3 93 aa15.63■□□□□ 0.09
PNKP-216ENST00000601816 BCE1O60756 84 aa15.63■□□□□ 0.09
PNKP-216ENST00000601816 PFN2P35080 140 aa15.63■□□□□ 0.09
PNKP-216ENST00000601816 NKAPP1Q8N9T2 125 aa15.63■□□□□ 0.09
PNKP-216ENST00000601816 GAGE10A6NGK3 116 aa15.62■□□□□ 0.09
PNKP-216ENST00000601816 TMEM170BQ5T4T1 132 aa15.62■□□□□ 0.09
PNKP-216ENST00000601816 RPL28P46779 137 aaKnown RBP15.61■□□□□ 0.09
PNKP-216ENST00000601816 RPL13AP40429 203 aaKnown RBP15.6■□□□□ 0.09
PNKP-216ENST00000601816 CHCHD1Q96BP2 118 aaKnown RBP15.6■□□□□ 0.09
PNKP-216ENST00000601816 ERG28Q9UKR5 140 aa15.6■□□□□ 0.09
PNKP-216ENST00000601816 CHTOPQ9Y3Y2 248 aaKnown RBP15.59■□□□□ 0.09
PNKP-216ENST00000601816 SFTA2Q6UW10 78 aa15.57■□□□□ 0.08
PNKP-216ENST00000601816 COX17Q14061 63 aa15.56■□□□□ 0.08
PNKP-216ENST00000601816 ZNF625Q96I27 306 aaPredicted RBP15.56■□□□□ 0.08
PNKP-216ENST00000601816 SND1-IT1Q9HBX3 110 aa15.56■□□□□ 0.08
PNKP-216ENST00000601816 IFI27L1Q96BM0 104 aa15.54■□□□□ 0.08
PNKP-216ENST00000601816 TRAV12-1A0A0B4J245 112 aa15.53■□□□□ 0.08
PNKP-216ENST00000601816 SCO1O75880 301 aa15.53■□□□□ 0.08
PNKP-216ENST00000601816 CBLN2Q8IUK8 224 aa15.53■□□□□ 0.08
PNKP-216ENST00000601816 VPREB1P12018 145 aa15.51■□□□□ 0.07
PNKP-216ENST00000601816 UBE2AP49459 152 aa15.51■□□□□ 0.07
PNKP-216ENST00000601816 IGKV2-28A0A075B6P5 120 aa15.5■□□□□ 0.07
PNKP-216ENST00000601816 IGKV2D-28P01615 120 aa15.5■□□□□ 0.07
PNKP-216ENST00000601816 RPL24P83731 157 aaKnown RBP15.5■□□□□ 0.07
PNKP-216ENST00000601816 TMEM223A0PJW6 202 aa15.49■□□□□ 0.07
PNKP-216ENST00000601816 HSBP1O75506 76 aa15.49■□□□□ 0.07
PNKP-216ENST00000601816 KRTAP13-1Q8IUC0 172 aa15.47■□□□□ 0.07
PNKP-216ENST00000601816 FAM19A2Q8N3H0 131 aa15.46■□□□□ 0.07
PNKP-216ENST00000601816 LINC00158P58513 81 aa15.45■□□□□ 0.06
PNKP-216ENST00000601816 A0A087X002 238 aa15.43■□□□□ 0.06
PNKP-216ENST00000601816 TRGC2P03986 189 aa15.43■□□□□ 0.06
PNKP-216ENST00000601816 CRYGAP11844 174 aa15.42■□□□□ 0.06
PNKP-216ENST00000601816 Q8NDZ9 215 aa15.42■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 203.5 ms