RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, human

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHKBP1-223	ENST00000600552	NXT2	Q9NPJ8	142 aa	Known RBP	10.53	□□□□□ -0.72
SHKBP1-223	ENST00000600552	ZNF861P	O60384	105 aa		10.52	□□□□□ -0.73
SHKBP1-223	ENST00000600552	LBH	Q53QV2	105 aa	Predicted RBP	10.52	□□□□□ -0.73
SHKBP1-223	ENST00000600552	PAPPA-AS1	Q5QFB9	102 aa		10.52	□□□□□ -0.73
SHKBP1-223	ENST00000600552	TSPAN13	O95857	204 aa		10.51	□□□□□ -0.73
SHKBP1-223	ENST00000600552	RPL13A	P40429	203 aa	Known RBP	10.51	□□□□□ -0.73
SHKBP1-223	ENST00000600552	SEC11A	P67812	179 aa		10.5	□□□□□ -0.73
SHKBP1-223	ENST00000600552	SCGB3A1	Q96QR1	104 aa		10.5	□□□□□ -0.73
SHKBP1-223	ENST00000600552		F8VRH5	84 aa		10.49	□□□□□ -0.73
SHKBP1-223	ENST00000600552		K7EMI3	77 aa		10.49	□□□□□ -0.73
SHKBP1-223	ENST00000600552	G0S2	P27469	103 aa		10.49	□□□□□ -0.73
SHKBP1-223	ENST00000600552	GAGE10	A6NGK3	116 aa		10.48	□□□□□ -0.73
SHKBP1-223	ENST00000600552	RPL37AP8	A6NKH3	93 aa		10.48	□□□□□ -0.73
SHKBP1-223	ENST00000600552	NUPR1	O60356	82 aa		10.48	□□□□□ -0.73
SHKBP1-223	ENST00000600552	NPS	P0C0P6	89 aa		10.48	□□□□□ -0.73
SHKBP1-223	ENST00000600552	RAB5B	P61020	215 aa		10.48	□□□□□ -0.73
SHKBP1-223	ENST00000600552	FAM19A3	Q7Z5A8	133 aa		10.48	□□□□□ -0.73
SHKBP1-223	ENST00000600552	MRPL55	Q7Z7F7	128 aa	Known RBP	10.48	□□□□□ -0.73
SHKBP1-223	ENST00000600552	TOMM6	Q96B49	74 aa		10.48	□□□□□ -0.73
SHKBP1-223	ENST00000600552	ADCYAP1	P18509	176 aa		10.47	□□□□□ -0.73
SHKBP1-223	ENST00000600552	TIMM17A	Q99595	171 aa		10.47	□□□□□ -0.73
SHKBP1-223	ENST00000600552	COX7B2	Q8TF08	81 aa		10.46	□□□□□ -0.73
SHKBP1-223	ENST00000600552	CARHSP1	Q9Y2V2	147 aa	Known RBP	10.46	□□□□□ -0.73
SHKBP1-223	ENST00000600552	ERAS	Q7Z444	233 aa		10.45	□□□□□ -0.74
SHKBP1-223	ENST00000600552	LINC00167	Q96N53	147 aa		10.45	□□□□□ -0.74
SHKBP1-223	ENST00000600552	SMIM1	B2RUZ4	78 aa		10.44	□□□□□ -0.74
SHKBP1-223	ENST00000600552	SPINK8	P0C7L1	97 aa		10.44	□□□□□ -0.74
SHKBP1-223	ENST00000600552	CXCL5	P42830	114 aa		10.44	□□□□□ -0.74
SHKBP1-223	ENST00000600552	RPL28	P46779	137 aa	Known RBP	10.44	□□□□□ -0.74
SHKBP1-223	ENST00000600552	BCE1	O60756	84 aa		10.43	□□□□□ -0.74
SHKBP1-223	ENST00000600552	ANAPC11	Q9NYG5	84 aa		10.43	□□□□□ -0.74
SHKBP1-223	ENST00000600552	TINCR	A0A1B0GVN0	87 aa		10.42	□□□□□ -0.74
SHKBP1-223	ENST00000600552	PDZD11	Q5EBL8	140 aa		10.42	□□□□□ -0.74
SHKBP1-223	ENST00000600552	TP73-AS1	Q9UF72	201 aa		10.42	□□□□□ -0.74
SHKBP1-223	ENST00000600552	NKAPP1	Q8N9T2	125 aa		10.41	□□□□□ -0.74
SHKBP1-223	ENST00000600552	TYMSOS	Q8TAI1	123 aa		10.41	□□□□□ -0.74
SHKBP1-223	ENST00000600552	CST9L	Q9H4G1	147 aa		10.41	□□□□□ -0.74
SHKBP1-223	ENST00000600552		A0A087X002	238 aa		10.4	□□□□□ -0.74
SHKBP1-223	ENST00000600552	CRYGA	P11844	174 aa		10.4	□□□□□ -0.74
SHKBP1-223	ENST00000600552	UBE2A	P49459	152 aa		10.4	□□□□□ -0.74
SHKBP1-223	ENST00000600552	SCO1	O75880	301 aa		10.39	□□□□□ -0.75
SHKBP1-223	ENST00000600552	NDUFA6	P56556	154 aa		10.39	□□□□□ -0.75
SHKBP1-223	ENST00000600552	FA2H	Q7L5A8	372 aa		10.39	□□□□□ -0.75
SHKBP1-223	ENST00000600552	S100P	P25815	95 aa		10.38	□□□□□ -0.75
SHKBP1-223	ENST00000600552	PFN2	P35080	140 aa		10.38	□□□□□ -0.75
SHKBP1-223	ENST00000600552	SMCO4	Q9NRQ5	59 aa		10.38	□□□□□ -0.75
SHKBP1-223	ENST00000600552	PMVK	Q15126	192 aa		10.37	□□□□□ -0.75
SHKBP1-223	ENST00000600552	IGKV2-28	A0A075B6P5	120 aa		10.36	□□□□□ -0.75
SHKBP1-223	ENST00000600552		H3BRM9	83 aa		10.36	□□□□□ -0.75
SHKBP1-223	ENST00000600552	IGKV2D-28	P01615	120 aa		10.36	□□□□□ -0.75
SHKBP1-223	ENST00000600552	FABP9	Q0Z7S8	132 aa		10.36	□□□□□ -0.75
SHKBP1-223	ENST00000600552	CLLU1	Q5K131	121 aa		10.36	□□□□□ -0.75
SHKBP1-223	ENST00000600552	TRAV9-1	A0A075B6T8	112 aa		10.35	□□□□□ -0.75
SHKBP1-223	ENST00000600552	IGLV5-45	A0A087WSX0	123 aa		10.35	□□□□□ -0.75
SHKBP1-223	ENST00000600552	TMEM218	A2RU14	115 aa		10.35	□□□□□ -0.75
SHKBP1-223	ENST00000600552	ATP5L	O75964	103 aa		10.35	□□□□□ -0.75
SHKBP1-223	ENST00000600552	GNB1L	Q9BYB4	327 aa		10.35	□□□□□ -0.75
SHKBP1-223	ENST00000600552	MRPL18	Q9H0U6	180 aa	Known RBP	10.34	□□□□□ -0.75
SHKBP1-223	ENST00000600552	LINC01549	A6NIU2	74 aa		10.33	□□□□□ -0.76
SHKBP1-223	ENST00000600552	ZNF625	Q96I27	306 aa	Predicted RBP	10.32	□□□□□ -0.76
SHKBP1-223	ENST00000600552	RETNLB	Q9BQ08	111 aa		10.32	□□□□□ -0.76
SHKBP1-223	ENST00000600552	IGLV5-37	A0A075B6J1	123 aa		10.31	□□□□□ -0.76
SHKBP1-223	ENST00000600552	LINC01546	A6NGU7	62 aa		10.31	□□□□□ -0.76
SHKBP1-223	ENST00000600552	UQCC3	Q6UW78	93 aa		10.31	□□□□□ -0.76
SHKBP1-223	ENST00000600552	PRLH	P81277	87 aa		10.3	□□□□□ -0.76
SHKBP1-223	ENST00000600552	KRTAP13-2	Q52LG2	175 aa		10.3	□□□□□ -0.76
SHKBP1-223	ENST00000600552	FAM19A1	Q7Z5A9	133 aa		10.3	□□□□□ -0.76
SHKBP1-223	ENST00000600552	TMEM238	C9JI98	176 aa		10.29	□□□□□ -0.76
SHKBP1-223	ENST00000600552	IGKV2D-26	A0A0A0MRZ7	120 aa		10.28	□□□□□ -0.76
SHKBP1-223	ENST00000600552	IGLC3	P0DOY3	106 aa		10.28	□□□□□ -0.76
SHKBP1-223	ENST00000600552	PMCHL1	Q16048	86 aa		10.28	□□□□□ -0.76
SHKBP1-223	ENST00000600552	KRTAP13-1	Q8IUC0	172 aa		10.28	□□□□□ -0.76
SHKBP1-223	ENST00000600552	SND1-IT1	Q9HBX3	110 aa		10.28	□□□□□ -0.76
SHKBP1-223	ENST00000600552	RPS10P5	Q9NQ39	176 aa		10.28	□□□□□ -0.76
SHKBP1-223	ENST00000600552	ERG28	Q9UKR5	140 aa		10.28	□□□□□ -0.76
SHKBP1-223	ENST00000600552	MUC2	Q02817	5179 aa		10.27	□□□□□ -0.77
SHKBP1-223	ENST00000600552	ZNF22	P17026	224 aa	Predicted RBP	10.27	□□□□□ -0.77
SHKBP1-223	ENST00000600552	COX19	Q49B96	90 aa		10.27	□□□□□ -0.77
SHKBP1-223	ENST00000600552	LINC00304	Q8N9R0	145 aa		10.27	□□□□□ -0.77
SHKBP1-223	ENST00000600552	SEC11C	Q9BY50	192 aa		10.27	□□□□□ -0.77
SHKBP1-223	ENST00000600552	IGLV5-39	A0A0G2JS06	123 aa		10.25	□□□□□ -0.77
SHKBP1-223	ENST00000600552	VPREB1	P12018	145 aa		10.25	□□□□□ -0.77
SHKBP1-223	ENST00000600552	COMMD7	Q86VX2	200 aa		10.25	□□□□□ -0.77
SHKBP1-223	ENST00000600552	TMEM126A	Q9H061	195 aa		10.25	□□□□□ -0.77
SHKBP1-223	ENST00000600552		A0A0U1RQV1	116 aa		10.24	□□□□□ -0.77
SHKBP1-223	ENST00000600552	RPL24	P83731	157 aa	Known RBP	10.24	□□□□□ -0.77
SHKBP1-223	ENST00000600552	IFITM2	Q01629	132 aa		10.24	□□□□□ -0.77
SHKBP1-223	ENST00000600552	FAM229B	Q4G0N7	80 aa		10.24	□□□□□ -0.77
SHKBP1-223	ENST00000600552	TMEM170B	Q5T4T1	132 aa		10.24	□□□□□ -0.77
SHKBP1-223	ENST00000600552	TRAPPC1	Q9Y5R8	145 aa		10.24	□□□□□ -0.77
SHKBP1-223	ENST00000600552		A0A096LNJ9	63 aa		10.23	□□□□□ -0.77
SHKBP1-223	ENST00000600552		A0A0U1RRA0	63 aa		10.23	□□□□□ -0.77
SHKBP1-223	ENST00000600552	LINC00614	P0C842	121 aa		10.23	□□□□□ -0.77
SHKBP1-223	ENST00000600552	BAGE3	Q86Y29	109 aa		10.23	□□□□□ -0.77
SHKBP1-223	ENST00000600552	HBD	P02042	147 aa		10.22	□□□□□ -0.77
SHKBP1-223	ENST00000600552	CBLN2	Q8IUK8	224 aa		10.22	□□□□□ -0.77
SHKBP1-223	ENST00000600552	URB1-AS1	Q96HZ7	61 aa		10.22	□□□□□ -0.77
SHKBP1-223	ENST00000600552	C11orf86	A6NJI1	115 aa		10.21	□□□□□ -0.77
SHKBP1-223	ENST00000600552	LINC00158	P58513	81 aa		10.21	□□□□□ -0.77
SHKBP1-223	ENST00000600552		Q8NDZ9	215 aa		10.21	□□□□□ -0.77

Retrieved 100 of 20,778 RNA–protein pairs in 88.4 ms