RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 RPL18AQ02543 176 aaKnown RBP10.83□□□□□ -0.68
UPF1-204ENST00000596842 IGLV4-60A0A075B6I1 120 aa10.83□□□□□ -0.68
UPF1-204ENST00000596842 IGLV5-39A0A0G2JS06 123 aa10.83□□□□□ -0.68
UPF1-204ENST00000596842 DEFB113Q30KQ7 82 aa10.83□□□□□ -0.68
UPF1-204ENST00000596842 SERP2Q8N6R1 65 aa10.83□□□□□ -0.68
UPF1-204ENST00000596842 XCL1P47992 114 aa10.82□□□□□ -0.68
UPF1-204ENST00000596842 SMCR5Q8TEV8 140 aa10.82□□□□□ -0.68
UPF1-204ENST00000596842 COX7B2Q8TF08 81 aa10.82□□□□□ -0.68
UPF1-204ENST00000596842 NBPF19A0A087WUL8 3843 aa10.82□□□□□ -0.68
UPF1-204ENST00000596842 IGLV5-45A0A087WSX0 123 aa10.82□□□□□ -0.68
UPF1-204ENST00000596842 DNAJC9-AS1A6NH13 148 aa10.82□□□□□ -0.68
UPF1-204ENST00000596842 ITPR2Q14571 2701 aa10.82□□□□□ -0.68
UPF1-204ENST00000596842 C1orf195Q5TG92 126 aa10.81□□□□□ -0.68
UPF1-204ENST00000596842 COPS9Q8WXC6 57 aa10.81□□□□□ -0.68
UPF1-204ENST00000596842 TRBV7-7A0A0K0K1E9 115 aa10.81□□□□□ -0.68
UPF1-204ENST00000596842 BBC3Q96PG8 261 aaPredicted RBP10.81□□□□□ -0.68
UPF1-204ENST00000596842 ESM1Q9NQ30 184 aa10.81□□□□□ -0.68
UPF1-204ENST00000596842 LINC00336Q6ZUF6 198 aa10.8□□□□□ -0.68
UPF1-204ENST00000596842 IMUPQ9GZP8 106 aa10.8□□□□□ -0.68
UPF1-204ENST00000596842 HILS1P60008 231 aa10.8□□□□□ -0.68
UPF1-204ENST00000596842 C6orf226Q5I0X4 101 aa10.8□□□□□ -0.68
UPF1-204ENST00000596842 LINC00337Q8N6G1 96 aa10.8□□□□□ -0.68
UPF1-204ENST00000596842 NCR3O14931 201 aa10.8□□□□□ -0.68
UPF1-204ENST00000596842 CYSTM1Q9H1C7 97 aa10.8□□□□□ -0.68
UPF1-204ENST00000596842 TRBV10-1A0A0K0K1A3 114 aa10.79□□□□□ -0.68
UPF1-204ENST00000596842 A8MTW9 85 aa10.79□□□□□ -0.68
UPF1-204ENST00000596842 MALP21145 153 aa10.78□□□□□ -0.68
UPF1-204ENST00000596842 A0A087WYN8 130 aa10.78□□□□□ -0.68
UPF1-204ENST00000596842 ENHOQ6UWT2 76 aa10.78□□□□□ -0.68
UPF1-204ENST00000596842 LECT2O14960 151 aa10.77□□□□□ -0.68
UPF1-204ENST00000596842 FSHBP01225 129 aa10.77□□□□□ -0.68
UPF1-204ENST00000596842 FASNP49327 2511 aaKnown RBP10.77□□□□□ -0.68
UPF1-204ENST00000596842 DEFB4AO15263 64 aa10.77□□□□□ -0.69
UPF1-204ENST00000596842 DAD1P61803 113 aa10.77□□□□□ -0.69
UPF1-204ENST00000596842 IGLV10-54A0A075B6I4 117 aa10.76□□□□□ -0.69
UPF1-204ENST00000596842 SMIM11BQ8TCY0 68 aa10.76□□□□□ -0.69
UPF1-204ENST00000596842 TRAV13-2A0A0B4J235 113 aa10.76□□□□□ -0.69
UPF1-204ENST00000596842 FAM240AA0A1B0GVK7 77 aa10.76□□□□□ -0.69
UPF1-204ENST00000596842 CCL18P55774 89 aa10.75□□□□□ -0.69
UPF1-204ENST00000596842 PRR3P79522 188 aaKnown RBP10.75□□□□□ -0.69
UPF1-204ENST00000596842 LRCOL1A6NCL2 159 aa10.75□□□□□ -0.69
UPF1-204ENST00000596842 C9orf129Q5T035 196 aaKnown RBP10.74□□□□□ -0.69
UPF1-204ENST00000596842 PRO0628Q9UI54 55 aa10.74□□□□□ -0.69
UPF1-204ENST00000596842 IGKV2-28A0A075B6P5 120 aa10.73□□□□□ -0.69
UPF1-204ENST00000596842 IGKV2D-28P01615 120 aa10.73□□□□□ -0.69
UPF1-204ENST00000596842 C16orf74Q96GX8 76 aa10.73□□□□□ -0.69
UPF1-204ENST00000596842 TRBV6-8A0A0A6YYG3 113 aa10.73□□□□□ -0.69
UPF1-204ENST00000596842 CRYGAP11844 174 aa10.73□□□□□ -0.69
UPF1-204ENST00000596842 GIG44P09565 113 aaPredicted RBP10.72□□□□□ -0.69
UPF1-204ENST00000596842 GYPEP15421 78 aa10.72□□□□□ -0.69
UPF1-204ENST00000596842 HECTD1Q9ULT8 2610 aa10.72□□□□□ -0.69
UPF1-204ENST00000596842 LAMTOR3Q9UHA4 124 aa10.72□□□□□ -0.69
UPF1-204ENST00000596842 FAM19A1Q7Z5A9 133 aa10.71□□□□□ -0.7
UPF1-204ENST00000596842 LINC00846Q9NV44 126 aa10.71□□□□□ -0.7
UPF1-204ENST00000596842 LINC01006Q8NI28 216 aa10.7□□□□□ -0.7
UPF1-204ENST00000596842 UBL5Q9BZL1 73 aa10.7□□□□□ -0.7
UPF1-204ENST00000596842 RETNQ9HD89 108 aa10.7□□□□□ -0.7
UPF1-204ENST00000596842 HTN3P15516 51 aa10.69□□□□□ -0.7
UPF1-204ENST00000596842 SCXQ7RTU7 201 aa10.69□□□□□ -0.7
UPF1-204ENST00000596842 UBR5O95071 2799 aaPredicted RBP10.69□□□□□ -0.7
UPF1-204ENST00000596842 RPS28P62857 69 aaKnown RBP10.69□□□□□ -0.7
UPF1-204ENST00000596842 VWFP04275 2813 aa10.69□□□□□ -0.7
UPF1-204ENST00000596842 HELZ2Q9BYK8 2649 aaKnown RBP10.69□□□□□ -0.7
UPF1-204ENST00000596842 C2orf48Q96LS8 159 aa10.69□□□□□ -0.7
UPF1-204ENST00000596842 FHL2Q14192 279 aa10.68□□□□□ -0.7
UPF1-204ENST00000596842 PLAC8L1A1L4L8 177 aa10.68□□□□□ -0.7
UPF1-204ENST00000596842 IL17DQ8TAD2 202 aa10.68□□□□□ -0.7
UPF1-204ENST00000596842 ATRQ13535 2644 aa10.68□□□□□ -0.7
UPF1-204ENST00000596842 TRBV6-4A0A1B0GX49 114 aa10.68□□□□□ -0.7
UPF1-204ENST00000596842 DEFB121Q5J5C9 76 aa10.68□□□□□ -0.7
UPF1-204ENST00000596842 IGHV3OR16-9A0A0B4J2B5 98 aa10.67□□□□□ -0.7
UPF1-204ENST00000596842 PF4P02776 101 aa10.67□□□□□ -0.7
UPF1-204ENST00000596842 RPL28P46779 137 aaKnown RBP10.67□□□□□ -0.7
UPF1-204ENST00000596842 Q8N3U1 123 aa10.67□□□□□ -0.7
UPF1-204ENST00000596842 CXCL5P42830 114 aa10.67□□□□□ -0.7
UPF1-204ENST00000596842 C9orf116Q5BN46 136 aaPredicted RBP10.67□□□□□ -0.7
UPF1-204ENST00000596842 LINC00959A0A1B0GUT2 108 aa10.66□□□□□ -0.7
UPF1-204ENST00000596842 ZNF843Q8N446 348 aa10.66□□□□□ -0.7
UPF1-204ENST00000596842 LINC00482Q8N8I6 264 aa10.66□□□□□ -0.7
UPF1-204ENST00000596842 F8WEM9 126 aa10.65□□□□□ -0.7
UPF1-204ENST00000596842 LINC01600Q96MT4 127 aa10.65□□□□□ -0.7
UPF1-204ENST00000596842 UPK3BQ9BT76 320 aa10.65□□□□□ -0.7
UPF1-204ENST00000596842 C22orf24Q9Y442 160 aa10.65□□□□□ -0.7
UPF1-204ENST00000596842 OXTP01178 125 aa10.65□□□□□ -0.7
UPF1-204ENST00000596842 SS18Q15532 418 aa10.65□□□□□ -0.7
UPF1-204ENST00000596842 TMEM86BQ8N661 226 aa10.65□□□□□ -0.71
UPF1-204ENST00000596842 LINC00474Q9P2X8 69 aa10.64□□□□□ -0.71
UPF1-204ENST00000596842 NDUFC2O95298 119 aa10.64□□□□□ -0.71
UPF1-204ENST00000596842 RMI2Q96E14 147 aa10.64□□□□□ -0.71
UPF1-204ENST00000596842 ANGP03950 147 aaKnown RBP10.64□□□□□ -0.71
UPF1-204ENST00000596842 LINC00269Q8N2A0 174 aa10.64□□□□□ -0.71
UPF1-204ENST00000596842 A0A087WZ39 114 aa10.62□□□□□ -0.71
UPF1-204ENST00000596842 IBA57-AS1B1ANH7 110 aa10.62□□□□□ -0.71
UPF1-204ENST00000596842 SMR3AQ99954 134 aa10.62□□□□□ -0.71
UPF1-204ENST00000596842 IGLV1-51P01701 117 aa10.61□□□□□ -0.71
UPF1-204ENST00000596842 WIPF1O43516 503 aa10.61□□□□□ -0.71
UPF1-204ENST00000596842 H0YGX0 51 aa10.6□□□□□ -0.71
UPF1-204ENST00000596842 DEFB135Q30KP9 77 aa10.6□□□□□ -0.71
UPF1-204ENST00000596842 FAM19A3Q7Z5A8 133 aa10.6□□□□□ -0.71
UPF1-204ENST00000596842 KRTAP1-3Q8IUG1 177 aa10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 71.5 ms