RNA–Protein interactions for RNA: ENST00000588059.5

VPS4B-202, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 5

Gene VPS4B, Length 1,252 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-202ENST00000588059 SCGB3A1Q96QR1 104 aa6.63□□□□□ -1.35
VPS4B-202ENST00000588059 AMELXQ99217 191 aa6.63□□□□□ -1.35
VPS4B-202ENST00000588059 SMCO4Q9NRQ5 59 aa6.63□□□□□ -1.35
VPS4B-202ENST00000588059 NDUFA1O15239 70 aa6.62□□□□□ -1.35
VPS4B-202ENST00000588059 NPSP0C0P6 89 aa6.62□□□□□ -1.35
VPS4B-202ENST00000588059 TIMM17AQ99595 171 aa6.62□□□□□ -1.35
VPS4B-202ENST00000588059 TRAPPC1Q9Y5R8 145 aa6.62□□□□□ -1.35
VPS4B-202ENST00000588059 F8WDY8 70 aa6.61□□□□□ -1.35
VPS4B-202ENST00000588059 C10orf25Q5T742 122 aa6.61□□□□□ -1.35
VPS4B-202ENST00000588059 UNQ6190/PRO20217Q6UXQ8 127 aa6.61□□□□□ -1.35
VPS4B-202ENST00000588059 ERASQ7Z444 233 aa6.61□□□□□ -1.35
VPS4B-202ENST00000588059 MRPL35Q9NZE8 188 aaKnown RBP6.61□□□□□ -1.35
VPS4B-202ENST00000588059 PRSS2P07478 247 aa6.6□□□□□ -1.35
VPS4B-202ENST00000588059 SEC11AP67812 179 aa6.6□□□□□ -1.35
VPS4B-202ENST00000588059 RNF151Q2KHN1 245 aa6.6□□□□□ -1.35
VPS4B-202ENST00000588059 GEMIN7Q9H840 131 aaKnown RBP6.6□□□□□ -1.35
VPS4B-202ENST00000588059 TOMM7Q9P0U1 55 aa6.6□□□□□ -1.35
VPS4B-202ENST00000588059 LINC01546A6NGU7 62 aa6.59□□□□□ -1.35
VPS4B-202ENST00000588059 RPL13AP40429 203 aaKnown RBP6.59□□□□□ -1.35
VPS4B-202ENST00000588059 HERVK_113P63121 156 aa6.59□□□□□ -1.35
VPS4B-202ENST00000588059 C2orf82Q6UX34 121 aa6.59□□□□□ -1.35
VPS4B-202ENST00000588059 LINC01561Q8N1V8 128 aa6.59□□□□□ -1.35
VPS4B-202ENST00000588059 PACRGQ96M98 296 aaPredicted RBP6.59□□□□□ -1.35
VPS4B-202ENST00000588059 C6orf48Q9UBA6 75 aa6.59□□□□□ -1.35
VPS4B-202ENST00000588059 FAM168BA1KXE4 195 aa6.58□□□□□ -1.36
VPS4B-202ENST00000588059 LINC01549A6NIU2 74 aa6.58□□□□□ -1.36
VPS4B-202ENST00000588059 CKS1BP61024 79 aa6.58□□□□□ -1.36
VPS4B-202ENST00000588059 KIAA0087Q14695 138 aa6.58□□□□□ -1.36
VPS4B-202ENST00000588059 GAGE2EQ4V326 116 aa6.58□□□□□ -1.36
VPS4B-202ENST00000588059 FAM19A3Q7Z5A8 133 aa6.58□□□□□ -1.36
VPS4B-202ENST00000588059 GAGE2DQ9UEU5 116 aa6.58□□□□□ -1.36
VPS4B-202ENST00000588059 C6orf226Q5I0X4 101 aa6.57□□□□□ -1.36
VPS4B-202ENST00000588059 LINC00469Q8N7U9 141 aa6.57□□□□□ -1.36
VPS4B-202ENST00000588059 C18orf32Q8TCD1 76 aa6.57□□□□□ -1.36
VPS4B-202ENST00000588059 CDKN2A-AS1Q9UH64 79 aa6.57□□□□□ -1.36
VPS4B-202ENST00000588059 TRBV30A0A0K0K1B3 111 aa6.56□□□□□ -1.36
VPS4B-202ENST00000588059 LINC00614P0C842 121 aa6.56□□□□□ -1.36
VPS4B-202ENST00000588059 NDUFA6P56556 154 aa6.56□□□□□ -1.36
VPS4B-202ENST00000588059 CST9LQ9H4G1 147 aa6.56□□□□□ -1.36
VPS4B-202ENST00000588059 MUC17Q685J3 4493 aa6.55□□□□□ -1.36
VPS4B-202ENST00000588059 TINCRA0A1B0GVN0 87 aa6.55□□□□□ -1.36
VPS4B-202ENST00000588059 TSPAN13O95857 204 aa6.55□□□□□ -1.36
VPS4B-202ENST00000588059 TLX1NBP0CAT3 122 aa6.55□□□□□ -1.36
VPS4B-202ENST00000588059 PMVKQ15126 192 aa6.55□□□□□ -1.36
VPS4B-202ENST00000588059 PMCHL1Q16048 86 aa6.55□□□□□ -1.36
VPS4B-202ENST00000588059 FAM19A5Q7Z5A7 132 aaPredicted RBP6.55□□□□□ -1.36
VPS4B-202ENST00000588059 Q8IZM0 81 aa6.55□□□□□ -1.36
VPS4B-202ENST00000588059 HBDP02042 147 aa6.54□□□□□ -1.36
VPS4B-202ENST00000588059 RAB5BP61020 215 aa6.54□□□□□ -1.36
VPS4B-202ENST00000588059 KRTAP7-1Q8IUC3 87 aa6.54□□□□□ -1.36
VPS4B-202ENST00000588059 URB1-AS1Q96HZ7 61 aa6.54□□□□□ -1.36
VPS4B-202ENST00000588059 A0A096LNJ9 63 aa6.53□□□□□ -1.36
VPS4B-202ENST00000588059 SMIM1B2RUZ4 78 aa6.53□□□□□ -1.36
VPS4B-202ENST00000588059 NDUFC2-KCTD14E9PQ53 114 aa6.53□□□□□ -1.36
VPS4B-202ENST00000588059 CBLN2Q8IUK8 224 aa6.53□□□□□ -1.36
VPS4B-202ENST00000588059 SLC7A5P1Q8MH63 180 aa6.53□□□□□ -1.36
VPS4B-202ENST00000588059 YPEL4Q96NS1 127 aa6.53□□□□□ -1.36
VPS4B-202ENST00000588059 M0QXV9 152 aa6.52□□□□□ -1.37
VPS4B-202ENST00000588059 SPINK8P0C7L1 97 aa6.52□□□□□ -1.37
VPS4B-202ENST00000588059 UBE2BP63146 152 aa6.52□□□□□ -1.37
VPS4B-202ENST00000588059 PDZD11Q5EBL8 140 aa6.52□□□□□ -1.37
VPS4B-202ENST00000588059 COX7B2Q8TF08 81 aa6.52□□□□□ -1.37
VPS4B-202ENST00000588059 IGLV5-45A0A087WSX0 123 aa6.51□□□□□ -1.37
VPS4B-202ENST00000588059 F8VRH5 84 aa6.51□□□□□ -1.37
VPS4B-202ENST00000588059 H3BRM9 83 aa6.51□□□□□ -1.37
VPS4B-202ENST00000588059 CXCL5P42830 114 aa6.51□□□□□ -1.37
VPS4B-202ENST00000588059 ATP5LO75964 103 aa6.5□□□□□ -1.37
VPS4B-202ENST00000588059 C9orf129Q5T035 196 aaKnown RBP6.5□□□□□ -1.37
VPS4B-202ENST00000588059 BAGE3Q86Y29 109 aa6.5□□□□□ -1.37
VPS4B-202ENST00000588059 IGLC3P0DOY3 106 aa6.49□□□□□ -1.37
VPS4B-202ENST00000588059 CHCHD1Q96BP2 118 aaKnown RBP6.49□□□□□ -1.37
VPS4B-202ENST00000588059 XAGE1AQ9HD64 81 aa6.49□□□□□ -1.37
VPS4B-202ENST00000588059 A0A087X002 238 aa6.48□□□□□ -1.37
VPS4B-202ENST00000588059 ZNF861PO60384 105 aa6.48□□□□□ -1.37
VPS4B-202ENST00000588059 TRGC2P03986 189 aa6.48□□□□□ -1.37
VPS4B-202ENST00000588059 ZNF22P17026 224 aaPredicted RBP6.47□□□□□ -1.37
VPS4B-202ENST00000588059 TMEM170BQ5T4T1 132 aa6.47□□□□□ -1.37
VPS4B-202ENST00000588059 CHTOPQ9Y3Y2 248 aaKnown RBP6.47□□□□□ -1.37
VPS4B-202ENST00000588059 C11orf86A6NJI1 115 aa6.46□□□□□ -1.38
VPS4B-202ENST00000588059 HSBP1O75506 76 aa6.46□□□□□ -1.38
VPS4B-202ENST00000588059 IFI27L1Q96BM0 104 aa6.46□□□□□ -1.38
VPS4B-202ENST00000588059 RETNLBQ9BQ08 111 aa6.46□□□□□ -1.38
VPS4B-202ENST00000588059 TPRXLQ17RH7 258 aa6.45□□□□□ -1.38
VPS4B-202ENST00000588059 FAM19A2Q8N3H0 131 aa6.45□□□□□ -1.38
VPS4B-202ENST00000588059 TYMSOSQ8TAI1 123 aa6.45□□□□□ -1.38
VPS4B-202ENST00000588059 CDIP1Q9H305 208 aa6.45□□□□□ -1.38
VPS4B-202ENST00000588059 CRCT1Q9UGL9 99 aa6.45□□□□□ -1.38
VPS4B-202ENST00000588059 C22orf24Q9Y442 160 aa6.45□□□□□ -1.38
VPS4B-202ENST00000588059 FSIP2Q5CZC0 6907 aa6.45□□□□□ -1.38
VPS4B-202ENST00000588059 IGLV5-39A0A0G2JS06 123 aa6.44□□□□□ -1.38
VPS4B-202ENST00000588059 PFN2P35080 140 aa6.44□□□□□ -1.38
VPS4B-202ENST00000588059 LBHQ53QV2 105 aaPredicted RBP6.44□□□□□ -1.38
VPS4B-202ENST00000588059 TRAV12-1A0A0B4J245 112 aa6.43□□□□□ -1.38
VPS4B-202ENST00000588059 H0Y8G0 127 aa6.43□□□□□ -1.38
VPS4B-202ENST00000588059 NUPR1O60356 82 aa6.43□□□□□ -1.38
VPS4B-202ENST00000588059 CRYGAP11844 174 aa6.43□□□□□ -1.38
VPS4B-202ENST00000588059 ZNF625Q96I27 306 aaPredicted RBP6.43□□□□□ -1.38
VPS4B-202ENST00000588059 COLCA2A8K830 154 aa6.42□□□□□ -1.38
VPS4B-202ENST00000588059 SERF1AO75920 110 aa6.42□□□□□ -1.38
VPS4B-202ENST00000588059 MRPL55Q7Z7F7 128 aaKnown RBP6.42□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms